TCONS_00014148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014148
Unique NameTCONS_00014148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014148 ID=TCONS_00014148|Name=TCONS_00014148|organism=Clytia hemisphaerica|type=transcript|length=1505bp
CTCGTATGGAAAGGACAATTCTTAAAAAATGTGCTCAGTAGCCATTTTAC
CGCAAGCAGAGCGTGACGTCGAGAAAGAAAACAGGTAACGTATAAACTAT
TGAAACATGACAGGGAGAGCAAGAGGCAGAGCCCGAGGTAGAGGAAGGGC
TCAACAAAATGCCCCACCACCTGGAGGTGCACCTCCTCCACAACAAAGTG
CACCACAAGCTGTTGGAAGAGGTAGAGCTCGTGGAGGACCACCACCAGCT
CAAAGCGCCCCACAACAACAAGCACCAGCACCCCGCCAACCACCTCCTCA
ACAACAGCGACAACAAGCTCCAGTAGCTGCTGTAGCAGACCAAATGCAGA
AAATGAATGTTCAGGAAGAGAGACCACGTCAAAGAAGGGGAATTGgtGAA
TTCAAGACCAGATCTTTCAAAGACCCAGCCACTGATAAAAAAGGAACAAG
TGGGGAACCCGTGCAAATATTGACCAATTATTTTAAAGTAGACAAGATGC
CACGTTTTGAGGGTCTTCATCAATACGTTGTTGCTTTTGATCCAGACATT
CAGTCACAAAAATTAAAGGGATTTTTGCTGTTCAGTATGCAAGATGTTAT
TGGTGAAGTCAAAGTGTTTGATGGCATGTCCCTCTTTTTACCACGAAAAT
TGGCTGAACCAGTTGTAGAAAGATGTGTTGAAACTCGTGATGGTTCATCG
ATCAAAGTGAAAATCACTCACACCAATGAGGTTCCGGTTAACTCACCTCA
AGTTGTTCAGCTTATGGGAATCTTGTTTAGAAGACAATTGCGCCATTTGA
ACATGCAACTTGTTGGCCGTCACTATTTCAATCCTTCACGCAAAATTGAT
GTTCCTGCCCACAAGATGGTTGTTTGGCCTGGTTTCGAAACAAACATTCT
NTTGAATGGGAGAAAACTGCCAACTCAACCTATGTATCAACGTGATCAGA
AGTTTACCTATCAACCTGGAAATGCTGATTGGCAGAAAGAAACCAGAGGA
AAACTTTTGATTTCAACATTCAACATGCAGAAATGGGTTTTAATCTTCTC
CCAACGTGATGAAAAGGTTGCACAAGACTTTCTCAGAACACTTAAAACTG
TTGCTAGTCCTATGGGTATGAGAGTTGCAGACCCTCAGCTTTGTCGACTT
CAATCTGACCAACCAAGACAGTACATCCAATCCCTGAAGGAACAAATTAA
ACCAGATACGGAAATTGTTGTTTGTATCGTCCCTAATAACCGTAAAGACC
GATATGACGCCATTAAGAAGATAACATGTGTTGAAAACCCTGTTCCATCG
CAAGTTGTTGTTTCAAGAACCCTCTCCAAACAACAGATGTTGATGAGTGT
CTGTACTAAGATTGCAATCCAGTTGAATTGTAAATTGGGTGGCGAAGTCT
GGGCTACAGAAATCCCTGTCAAGAAATTGATGGTCATTGGTTTTGATGTA
TACCATGACTCAATGAACAAAGGGCAATCAATTGGTGGATTTATTGCATC
TACCA
Run BLAST on NCBI

transcript from alignment at sc0000181:439442..451967-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014148 ID=TCONS_00014148|Name=TCONS_00014148|organism=Clytia hemisphaerica|type=transcript|length=12526bp|location=Sequence derived from alignment at sc0000181:439442..451967- (Clytia hemisphaerica)
CTCGTATGGAAAGGACAATTCTTAAAAAATGTGCTCAGTAGCCATTTTAC
CGCAAGCAGAGCGTGACGTCGAGAAAGAAAACAGGTATCATTTTGTTTTA
TCTTTCTGGTATTTTATCTTTCTTTTTTTGTTCATTGTCTATTTCTGCTT
ACCTACCTACCTTGGTTTTCAAACTACAGAGAAAATGTAATGGTGTACAT
ATATCTTTGCTTATGTTTGGCTAGCTAAGTTTTCCTTCAATAATTTTGTT
TCAGTTTCTGGAAATGTGTTGGTGTCTTTCTAACATTAGCCTTTTTATGC
TTCGATTTTAGGTAACGTATAAACTATTGAAACATGACAGGGAGAGCAAG
AGGCAGAGCCCGAGGTATGTTGGTTCTACTTTTCATATGTTCACCATACT
AAACTCCTATTCTCAAACTAGAAATCTACAGCAACTTCATGTTATGTTCA
TTTTAAAAGTGAAACTATTTTAAAGTATTATAAGGTCCCAAGACCCATTA
TCCATAGGTACATACAAATCATAAGATTCACTGCTATTACTCTCAGGTAG
AGGAAGGGCTCAACAAAATGCCCCACCACCTGGAGGTGCACCTCCTCCAC
AACAAAGTGCACCACAAGCTGTTGGAAGAGGTAGAGCTCGTGGAGGACCA
CCACCAGCTCAAAGCGCCCCACAACAACAAGCACCAGCACCCCGCCAACC
ACCTCCTCAACAACAGCGACAACAAGCTCCAGTAGCTGCTGTAGCAGACC
AAATGCAGAAAATGAATGTTCAGGAAGAGAGACCACGTCAAAGAAGGGGA
ATTGGTATGTTATTTTCTCACAAAAAATTATAATAGTTTTCTCAAACTTC
TTAAGAGTTTCCTAACAGATTTCTCCAAAGAAGTAAGAATATAACTCTAC
TAAATTGCGTGATGGTGAAGTGGAAGAGAGAGTTGGTGAAGATTTCATTA
GAGCGAGTGTTTGTGTCTACGTTTTTGCATTGGATAAGTGGGGCTAAAAA
TTATATTTAGTAGCTCTAAACATTTTAAAACTTTTCTTGTGTTGGGTATA
TTTTCTTTTCCTCAAAGGCTGAACAAGGTTGCAATGGCCAAAACATTAGG
ATAAAGTTAGGCGTATATCAATGATATGTTCCGTTTGGATCACAATACAT
CCCCAAATTAAGTTTAATTTTATTGATGGTAGCCTTATCCAAACATATCC
TACTCGATACAATCAAAAGCTTCTTCCAATCGATAACCAACGATTGACTG
GATATCTATTGACTCCGATAATCTATAGGTAATACAGACTATTCCAAAAT
CTTGAGTACAGGCCATTTTTCATGCCCTTTTAGCGTCCGGTCATCGGACG
CTGCCCCTCATAAAATCTCTAAAATTTTGGTAAAAACAGCCTTTTTAGCA
GAAAAACACACGAAAAAGTGCCCTTTTTGGCCACCAACGGACGCTGCCCT
GCCTTTCTAAAATATGGCCTGGAGTATCAATCATTGTTTTTTCCTGGTAG
GTGGGGGTCCTTTAAATTAACCGATGTCTGTCTGTTCGTCTGTTACCAAC
TTTTCTCGGGATTGACTCATTAGTTTTTTCTGATTTTTTGCACAGTGATG
CAAAATAGTGATTCCCAAAAAGTGATGGAGCTCGATAGAGGGCAAGGTTC
TCTAAAAAGTTGCTCAAGCAGTTTTTTTCTTATGTCACTTTTAGGGAAAA
GAGCTATTTTCGCGATTGGATGGATATTTTTTTCTGATTTTTTTGCACAG
TAACGTGAAATGGGGCAATTTAAAATCTGAAGGTCGATTTTCAAATATAA
ATGGGGTTTTCTGGACTTTGTGTGAAATTGCTTCATTGGTTTTTTCTAAT
TTTTTGGACTGCTCTACACTTTCTTACTACTACTGCTATTTGTCCATTCA
GCATCTTGCTTCCTTTTATGGTCTGAACATACCTCAAAAACATTTTTAGG
TCGTATTTGGGCCAAAATAGTAAACCATTCTTTTACCCCAATTATTTTAT
GTTCAGGCTAAGTTCTAGTTACAAAATTCTAGATTTTCGCTTCTGAAAAC
CTGCCCTAACATGTGCAGGCTAAGGTTGGGTCATGTTAAAGACTATAAAG
TTGGAAATTGTCTTGTTGACCTCTGGGTCATAACTGCAGTTCAATTTTTT
TAAGGTTGAACCTAGTTACTGCAGGAAAAATTTAAATTCCACAATTTGAC
AAAAAAGGGAAAACATTAGTTCTTCAGAGACTTATCTTTTGTGGATCAAA
CGCTAGATAAGAAAACTAACTGTAGTCATACACCTTTGGCGTAAACAAAA
GTCTCAACTACACTCAACACGAATCAAACAATAAACGAAAATCCAATGTT
TAAACAAAAGTTCAAAGTGACAAAGCTCATCACAAACCAAATCGCAAAAA
ATTTGCAGTCGGGTGGCGTCAAAAAAGAATTTTCATCAGGCCAGTGGACT
GGAAACAAATGTTTTTAGGGTTGACCTTAAATTTTTTATTGGCTAACTCA
AAAACCTTTGGCAAAAAAATCAGAGGTTATTCTAACTTGAAAATCAAGAA
AATTGAGTTAAGGAATCATAATTTGCGTTAAGGAGTCATAATTTGCACTT
TTATAACGTCATAATTTAGCTAACTAGAAGATTCCAGGTGTTATTTTTGT
CAAAGAGTTGAAAGACTGATCTATTTAATTCCTTTACTACCTTAAGTGGA
TGAATTTTCGCGTGGATTAATTTTCGCGATTTTCGCGTATTTTGGCCATT
TTCGTGAAATTTTGTCCACGCGAAAAATTTAAAATTATGATTTTTGCCAA
AACCCCTAGGAAAATAAAGAAATTAGGTGAAAAAGAGGCTGATTCGCGAA
ATTTAGTCCACGCGAAAATTTTCGATTTTCGATTCGCGAAAAAAAGTCCA
CGCGAAAATTTATCCACTTAAGGTAATTTTTCAGGGAGTGCAATTTAAAT
GAAAATAAGACTTGGTCTGGTTAAAATTAGGGTTAACCCTTTCAGTCCCA
GAGTTTTCACAGCTACTTTCCCAGAGCCGTAAAATGAGTTTTTGAATGCA
TTTACTCATGCTTCAATATCTCTGGAATCACTAAACTTAGTCCTCTCAAG
TTTTCACCCTTTTTCACTTATAGTATGAAGATCATATTGATAAAAAAAAA
TTTAGCAAAATGACATCATCAGCGTGTCACGTGACCAGAGAAAGGCAAAA
AAAAATTTGAAAACAGCAATTTTTTGCCATTCAATGGTAATTTTTTTTAT
GAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
CACAATTTGAAAAATAATTCAGGGACCGCTATGCAGTCCTCTGGGAAAAA
ACGACGGGTCCAAAGGGACTGCAGTGCGGTCGCGTGGGACTGAAAGGGTT
AACAACAACATTTCTCCTCTGATTAGCTTGAAAATTCTTTTCTTTTTAAA
GGTGAATTCAAGACCAGATCTTTCAAAGACCCAGCCACTGATAAAAAAGG
AACAAGTGGGGAACCCGTGCAAATATTGACCAATTATTTTAAAGTAGACA
AGATGCCACGTTTTGAGGGTCTTCATCAATACGTTGTTGCTTTTGATCCA
GACATTCAGTCACAAAAATTAAAGGGATTTTTGCTGTTCAGTATGCAAGA
TGTTATTGGTGAAGTCAAAGTGTTTGATGGCATGTCCCTCTTTTTACCAC
GAAAATTGGCTGAACCAGTTGTAGAAAGATGTGTTGAAACTCGTGATGGT
TCATCGATCAAAGTGAAAATCACTCACACCAATGAGGTTCCGGTTAACTC
ACCTCAAGTTGTTCAGCTTATGGGAATCTTGTTTAGAAGGTAATGTTATT
AATTTTAATTGACAACACAATGTTGACAAATCTGAGTTGCTTTCCTCTTG
GGTCAACAATAAGTTCAGGCTGCATCATTTGAGGCGTGCGATAGCACGCG
CACACCTCCACACACACCTAAAATGTCTGAGGAGTGCGATCAATCACACC
CCAAAAAGTAAGTTTCACAACTGAAAGTTGTGCATAGCACTCCTTATCAC
ACGCCTAAATTACTAAAATTAAGGTTTTAGGAGTGTGATTGACCACACGC
CTGAAATTTTCAAATGATGCAGCCTGTAAGTTAATTCTCAACTTCAGTTG
AGCTACAATCTGACAATGTCTGTCTGTCTGTGTGTGTGTGTGTCTGTCTG
TCACAAAAACTTTAGGGCAGCCTGTAGACTTCNCAGAACTGAGCTATAAT
TTTTAAAGCAAGAAATGAATAAATTCAATAGAAATAAACAAAACATGAAG
CGGTCACATATAAATGTTCTGCATTAATCACTTAAGTCAATGATGATCCT
TTGTTTTTATGATCATACGAGTTAAAAATAAAGTTATGTTGATATACTTT
TCAATGTTTAGATATAACAACAAGACCTACACCGTAGATGACATTGCATG
GGATAAACATCCCACTGACACATTTGAAAAAGCTGATGGCTCTAGAATTA
GCTACAAAGAGTATTATACAACAGCTTATGAACAAGCACCCAAAGATGAC
CAACAACCGCTTTTGTTGTCTAGACCCAAAGACAAGGATAGGAAACGCGG
TGTTTCTGGAAATATTTATTTGTTGCCAGAATTTTGCTCCATTACAGGTA
AAATTCCAAAGTGGATATGGAAACCACCTTTTTGTCACTCAAGTTTATCC
CATATTTCGTTCCAAACAAGATTCCCACTTTTTTAAAAGATATTTTTGAA
TTTTGATCATTTCGGTCTTCACATATTATATTAAACATGTAATTTGACTG
CAATTAAAACTATATTTTTGGTTTCAATTGCATAGGATGACCTAGTCCTG
CCTTTGAAGAAAAAGGCCTCTTTAAGTTAACATTCACTCAATGTTTTTAT
CTTTTTTTTAGGCTTATCTGAAGAAATGAGGGCCAACTTCCAGGTTATGA
AAGATTTGGCACAACATACAAGGATTGGTCCAGCCCAAAAAGTGGNGGGG
CAGCCTTGAGACTTCAAAAATTGTTCGATTTGGCTGAAACTTTGCACACT
TGTTCCTTGGGTGAATATCTGGGGGTGCTTTTTGCATTTTTCAAAAAACT
TAATTTTTGGGGCCTGGGGACGAGTTTTTTGCCAAAACAAGGCTAAAGCT
TTGGAGCAGCCTACAGGCCTCCAAAATGGTCGGATTTGGTTGAAATTTGG
CACACTTGTTCATTGGGTGAATATCTGGGGGTCTACAATTGTGCCTATGA
ATAATTTGAAGCCACTGAAGTTGAGCCCAGTGCGTTGCGCACGTTCGACT
ATTTGACACAAGTGGTCTATTTATTTACAGTGATTTTAAATATTATGTGA
CTCCCAAGCAATCTTAATTGTCTGAAAAATTGACAATTTTTTACTAGCAG
TCTAGTAGTGACCAAATTTTTAATGCTTTGAAACTTAGAAATCTGATTTT
GATGACCAGTCCTAGTAATTCGCAATTAGTTGTTGCATGTTATACTGGCT
AATATATTTTTTAGTAACAATGAAATTAGAGCAATTTCTGTAAACCTTTT
CAATCTGTTGCCTAAATTTGGGACTGGTGTAATGGTTGAAACACACTTCA
AAAAGGCTGTTTAACTAAAGCCTGGTTTTCTTGACTGAAATCCTTATCTA
GCTTTATTTGAATAAAGGCCATTTTGGAAATAACAAACAAATTCCTGGTC
ACTAGTTGTTACCATTGGTACCAGAGTAAGGCTTAAAAACTGGGAGCTGT
CTATAATAGTTTTGCTTAAAGAGATTTCATTCCATAAATTATCTTCTGAA
TTTGTTTAGACAATTGCGCCATTTGAACATGCAACTTGTTGGCCGTCACT
ATTTCAATCCTTCACGCAAAATTGATGTTCCTGCCCACAAGATGGTTGTT
TGGCCTGGTTTCGAAACAAACATTCTNTTGAATGGGAGAAAACTGCCAAC
TCAACGTAAGTCACACCAATCAAATTTTAAATCAGGCTAATTAATACTAG
TAGATTCTCCAGATGTGTTAAAAATGTAATATAAACAGGACTAAAGTTGA
AATATTTTTTTCTTACAATCACTTATTGATATGATTTAATATGGATTTTA
TTACAGCTATGTATCAACGTGATCAGAAGTTTACCTATCAACCTGGAAAT
GCTGATTGGCAGAAAGAAACCAGAGGAAAACTTTTGATTTCAACATTCAA
CATGCAGAAATGGGTTTTAATCTTCTCCCAACGTGATGAAAAGGTTGCAC
AAGACTTTCTCAGAACACTTAAAACTGTTGCTAGTCCTATGGGTATGAGA
GTTGCAGACCCTCAGCTGTAAGTGACAAGTTTAGTCTTAAGCTTATTAAA
GGTTTTGTTTTTACATAAGTGCTTCCATTTCATATCAGACACATATTTCA
TATCAGGACAGTGTCTTGCTGTTGTCATTATGCTTATACTAGCAAAAAAG
TTTTTCTTTTCCTCTTTCTGACCAATCTTGCTTCACATCTATCAATAGCG
CACCACGCTGAATCTAAAAATATATTTTATTTTGACATAATCGTTACTCT
CGATGTGTTTGTACGAGTTCCAATCGCATCAACCTTTGCGTTAATCTCTT
TTGCACGTTAATTGCATCATTTGACAAAAGATATATAACAACTTGCATGT
ATCTTTAATTGAGCCGCATTGAATTGTGGGATTGCAACTCGTACAAATGT
CAAAAAAGTGAAAAGTAATAATTGTGACAAAAGCATTGCGGAGCTCTATT
CAATGTGAGAAAGCTTGTAAATAAAAATTGATGAGTAAGCAAACGTAATC
ACTTTTATTTAAAAACAAAACCTTTAGGGGTCACACCAAAATATAAGTCT
AGCTAATGCTAAAAGGAAACACCATTTTTGCTTATTTTAAGCGGCACGTC
AAAAAACTTCAATAAGCATTTCTAATAAGTCTAAAAATTTGTGTGGATAA
AAATTCATTCATTGTTTCACTCTGTTTTTCTCTGTGTAAATGTAATGGCG
TGTGCAAAAGAATATGTGCACGTCTTTTCAAAATTTTCAAAATTTGAAAG
TAAATCGATTTTTTCAATAGATCTATTTATTTAAACATAAAGGAATTCTT
CTTAAACTACGATAAGACTTGCTATCGAGCAAGTCTTATTTTTTCGTTTA
TTAAAACAGGTGATTTCTCGAATTCAGTATTTCGTCTCCCATATTTTCAA
GTGGTCGCATCAAAAAATAGATAAAAATATTTGTTGTTATGACAACAGCT
ATATAAGCGGAGGTAAATCATTTGATGTGACCCCGTGCTCTTAGTGACTA
AAGGCTAGAATAAGGGTCAGCTATCAGAGATTCTTCACAAGGATAATTTA
TTTATTTATTGTGAAATTTTCAGGACTCGTTTTAGAAAATCAGCATTTTA
AACAATTCTGTAGAGATTTAATTTGTGAGTTCAAGATCTTAAGTGATTTT
TCAATATTGTTTTAACAGGTATAAATTTCTCAAAAATTAATTGTTGCTTT
AAAACTAAAAAGACTTCAGTCACATTTTACATAAAAATGAACTGCTGGTT
GATTCATATTCAAGTTGTAAGACTTACCCACTGGAAAGTTTTCAATTCTA
TGAAGCAACAAAATCTGATAATAGTAGATTTATACTTTACATATTGAGGG
ATATTAGTCAATTGAAAATTCTATATTTTAACTTTTCAGTTGTCGACTTC
AATCTGACCAACCAAGACAGTACATCCAATCCCTGAAGGAACAAATTAAA
CCAGATACGGAAATTGTAAGTTTCTTTTTTAACAAATTTAAGATTTTGGC
TACCTTTTGATTGTTTACATCTTGTTCATTTTAGTGAAGGTTAGGTGTTG
CTACTGTTTACACCAAACTTCACTATTTCTTTGGTGTTTAGGTTGTTTGT
ATCGTCCCTAATAACCGTAAAGACCGATATGACGCCATTAAGAAGATAAC
ATGTGTTGAAAACCCTGTTCCATCGCAAGTTGTTGTTTCAAGAACCCTCT
CCAAACAACAGATGTTGATGAGTGTCTGTACTAAGATTGCAATCCAGTTG
AATTGTAAATTGGGTGGCGAAGTCTGGGCTACAGAAATCCCTGTCAAGAA
ATTGATGGTCATTGGTTTTGATGTATACCATGACTCAATGAACAAAGGGC
AATCAATTGGTGGATTTATTGCATCTACCAATGACTCTTTGACCCGTTAC
TACTCGCGTATCACAAAGCAACGTTCGCACAATGAAATTTGTTCACAACT
AAAGATCTGTATGACAGGTACGTTAAATAAAAAGTCTATTCAGCCATTTA
AGTTCATGACTTTGTTTTGCCTCAAGTGGATCGCTTTAACCCAAAATTTG
TCTTCTTGAAATGTCTGAAATCTTAAGTTTAACCTGAGGAGAGGAGAATT
GGTCAACAAATTAGACAGATTTTAATCTCCATTTGCAAAAAAAGACAGCG
AAAAATCAATTCACTTGAGTTGAATTTTTTTCGTTAAGTTTTTTTGATCG
CTGAAAATTGTGCCTGTAATTCAACTTCTCTTAACCTGGTATTGACAAGA
GCCACATTCCAGTGTACCTCAATATTTTCATTGATAGTGATCGACTTTAT
TGGACCTACCTCGGTGGGGTGGAGGTCCTATAAATTAACCTTTAATCGTT
CGTTTGTGACCAACTTTTCTCAAGATAGAATCATTTGGATCATTAATTCT
TTTCGGATTTTTTGCATGAAAGTAGGGTACCATGATAGGTAAAAGATGGC
TCAAACAGATATTTGCAAAAAAATTTGTTGGCTCATAAAACGCATTAATG
ATTTTTTGAAATTTTGACATTAAAAAAAAGTCAGTTTTTTTAAATAATTT
TCAAATTACTTTTTCAAACCTAATGTATGATAGCTCAAAATTCAAGTTAT
AGCATCCTCTATGCGACAAAAAAAGAATGAACAAAAAATTCAAATCCTAA
AGCTCACAATATCTCGACAAAGTTGTATACTTTTTATTGGTGCACCCGAT
ATAAGAATCACTATTAATAAGCATACATCAATGTACTTAGCCAAATTAAG
CTCAATTTTTTTATATGAGATAGATGTGTTTTTGCTCACAAAGTCTTAAA
TATGAAAGATTATTTCAAGAGCATGCAATTTTTGTTTCTAAACATTTTTT
TATAAGAAACAAACGACTAATTTAATAGATCGTAACTATTTGTGTTCTAA
ATGATTGTTTAACGGTCATACTCACGTATATATCAATTATATGTGTTAAA
TGCATAACCAGGTACGTAGTTTCATAAAAGTATCACTTGTTTACTTTGTA
GGTGCATTGAAGAAGTACCGTGAAGTAAACGGTCACGACCCAGACAGAAT
CATTGTTTACCGAGATGGTGTTGGAGATGGACAGGTACAGAGTATTCTAT
CTTAGGCGAGACTAATTTAATTTGTTGTTCTACGGGCCTGACCAACACTA
TTTTCACTAAAATCAAAAAATAATAATATTGAATTTCCACTACAATATAT
TTTACACACTACTTATTTGTGAGAATCAAATTCGAATAAAGCTGAAAATT
AATTCAAGAAATTGAAAAATCAAGCATTCCATACACTAAGATTTTATTAT
GATCTCTTCATCGAAGATAAAAAATGAATTTTTAGATATTTTTTGGAAAA
CATTTTCGGTACTTTGCCTACCCTGATTAATGAAAAATTTATTCTTACTT
GACCGACCGACCAACCCATATTTTGCTAACAATCTGCCCGTATAACAAAA
ATTAAATTGGTCTTATCACAATATATGATGGGAACTATAGCTGACGTTGT
GGTTTTGAACGTTTAAGCCTGTCTATTGTGAAGACTAATGTAGTGACCCG
AAAGCTACCGAAGAATGGTGGATGGTACTGGGTCAGTAGATAGGAAACAG
TTATTTCACATGTATTCTGCAGCATCATGATTGGAATAGAACAGGCATAA
CTAGTTAAATCCCCATGCTCTTATTTGGAATCTGGGATTTAGGGTCAGAC
TCAGGCCCATTCTCTCAAAGCATGGGTAAATGAGGCAAAAGAGACATTGA
CAAAAGGCAAATCACAGGGAATGTTGACCACGGATATCTGTCAAGCCCGA
AGGGCTAGATAGGCAACTTTAAGCTTTCNGTTCATTTTAGTGAAGGTTAG
GTGTTGCTACTGTTTACACCAAACTTCACTATTTTTTTGGTGTTTAGGTT
GTTTGTATCGTCCCTAATAACCGTAAAGACCGATATGACGCCATTAAGAA
GATAACATGTGTTGAAAACCCTGTTCCATCGCAAGTTGTTGTTTCAAGAA
CCCTCTCCAAACAACAGATGTTGATGAGTGTCTGTACTAAGATTGCAATC
CAGTTGAATTGTAAATTGGGTGGCGAAGTCTGGGCTACAGAAATCCCTGT
CAAGAAATTGATGGTCATTGGTTTTGATGTATACCATGACTCAATGAACA
AAGGGCAATCAATTGGTGGATTTATTGCATCTACCAATGACTCTTTGACC
CGTTACTACTCGCGTATCACAAAGCAACGTTCGCACAATGAAATTTGTTC
ACAACTAAAGATCTGTATGACAGGTACGTTAAATAAAAAGTCTATTCAGC
CATTTAAGTTCATGACTTTGTTTTGCCTCAAGTGGATCGCTTTAACCCAA
AATTTGTCTTCTTGAAATGTTTGAAATCTTAAGTTTAACCTGAGGAGAGG
AGAATTGGTCAACAAATTAGACAGATTTTTATCTCCATTTGCAAAAAAAA
GACAGCGAAAAATCAATTCACTTGAGTTTAATTTTTCTTTAAGTTTTTTT
GATCGCTGAAAATTGTGCCTGTCATTCAACTTCTCTTAACCTGGTATTGA
CAAGAGCCACATTCCAGTGTACCTCAATATTTTCATTGATAGTGATTGAC
TTTTTTGGACCTACCTCGGTGGGGTGGAGGTCCTATAAATTAACCTTTAA
TCGTTCGTTTGTGACCAACTTTTCTCAAGATAGAATCATTTGGATCATTA
ATTCTTTTCGGATTTTTTGCATGAAAGTAGGGTACCATGATAGGTAAAAG
ATGGCTCAAACAGATATTTGCAAAAAAATTTGTTGGCTCATAAAACGCAT
TAATGATTTTTTGAAATTTTGACATTAAAAAAAAGTCAGTTTTTTTAAAT
AATTTTCAAATTACTTTTTCAAACCTAATGTATGATAGCTCAAAATTCAA
GTTATAGCATCCTCTATGCGACAAAAAAAGAATGAACAAAAAATTCAAAT
CCTAAAGCTCACAATATCTCGACAAAGTTGTATACTTTTTATTGGTGCAC
CCGATATAAGAATCACTATTAATAAGCATACATCAATGTACTTAGCCAAA
TTAAGCTCAATTTTTTTATATGAGATAGATGTGTTTTTGCTCACAAAGTC
TTAAATATGAAAGATTATTTCAAGAGCATGCAATTTTTGTTTCTAAACAT
TTTTTTATAAGAAACAAACGACTAATTTAATAGATCGTAACTATTTGTGT
TCTAAATGATTGTTTAACGGTCATACTCACGTATATATCAATTATATGTG
TTAAATGCATAACCAGGTACGTAGTTTCATAAAAGTATCACTTGTTTACT
TTGTAGGTGCATTGAAGAAGTANTTTAACAAATTTAAGATTTTGGCTACC
TTTTGATTGTTTACATCTTGTTCATTTTAGTGAAGGTTAGGTGTTGCTAC
TGTTTACACCAAACTTCACTATTTCTTTGGTGTTTAGGTTGTTTGTATCG
TCCCTAATAACCGTAAAGACCGATATGACGCCATTAAGAAGATAACATGT
GTTGAAAACCCTGTTCCATCGCAAGTTGTTGTTTCAAGAACCCTCTCCAA
ACAACAGATGTTGATGAGTGTCTGTACTAAGATTGCAATCCAGTTGAATT
GTAAATTGGGTGGCGAAGTCTGGGCTACAGAAATCCCTGTCAAGAAATTG
ATGGTCATTGGTTTTGATGTATACCATGACTCAATGAACAAAGGGCAATC
AATTGGTGGATTTATTGCATCTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007915XLOC_007915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014148-exon-sc0000181-1575043694:451884..451967TCONS_00014148-exon-sc0000181-1575043694:451884..451967Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1575043694:451604..451656TCONS_00014148-exon-sc0000181-1575043694:451604..451656Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1575043694:451164..451421TCONS_00014148-exon-sc0000181-1575043694:451164..451421Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1575043694:447629..448016TCONS_00014148-exon-sc0000181-1575043694:447629..448016Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1575043694:445513..445658TCONS_00014148-exon-sc0000181-1575043694:445513..445658Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1575043694:445151..445361TCONS_00014148-exon-sc0000181-1575043694:445151..445361Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1575043694:443703..443778TCONS_00014148-exon-sc0000181-1575043694:443703..443778Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1575043694:439442..439730TCONS_00014148-exon-sc0000181-1575043694:439442..439730Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1510915933:451884..451967TCONS_00014148-exon-sc0000181-1510915933:451884..451967Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1510915933:451604..451656TCONS_00014148-exon-sc0000181-1510915933:451604..451656Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1510915933:451164..451421TCONS_00014148-exon-sc0000181-1510915933:451164..451421Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1510915933:447629..448016TCONS_00014148-exon-sc0000181-1510915933:447629..448016Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1510915933:445513..445658TCONS_00014148-exon-sc0000181-1510915933:445513..445658Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1510915933:445151..445361TCONS_00014148-exon-sc0000181-1510915933:445151..445361Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1510915933:443703..443778TCONS_00014148-exon-sc0000181-1510915933:443703..443778Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1510915933:439442..439730TCONS_00014148-exon-sc0000181-1510915933:439442..439730Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1491911889:451884..451967TCONS_00014148-exon-sc0000181-1491911889:451884..451967Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1491911889:451604..451656TCONS_00014148-exon-sc0000181-1491911889:451604..451656Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1491911889:451164..451421TCONS_00014148-exon-sc0000181-1491911889:451164..451421Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1491911889:447629..448016TCONS_00014148-exon-sc0000181-1491911889:447629..448016Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1491911889:445513..445658TCONS_00014148-exon-sc0000181-1491911889:445513..445658Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1491911889:445151..445361TCONS_00014148-exon-sc0000181-1491911889:445151..445361Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1491911889:443703..443778TCONS_00014148-exon-sc0000181-1491911889:443703..443778Clytia hemisphaericaexon
TCONS_00014148-exon-sc0000181-1491911889:439442..439730TCONS_00014148-exon-sc0000181-1491911889:439442..439730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:439442..451967 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.3461	34.6157	38.4957	44.8945	823.905	635.142	249.434	299.232	139.845	177.195	76.5947	96.9309	69.2639	67.3326	85.5391	135.586	149.555	141.21	15.1152	23.1519	61.7465	68.8913	66.2267	75.0365	146.667	162.015	36.4315	20.9911	68.5819	80.0854
Blast
[Close]
BLAST of TCONS_00014148 vs. Swiss-Prot (Human)
Match: PIWL1 (Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 9.058e-55
Identity = 92/207 (44.44%), Postives = 141/207 (68.12%), Query Frame = 2 
Query:  884 FETNIL-LNGRKLPTQPMYQRDQKFTYQPGNADWQKETRGKLLISTFNMQKWVLIFSQRDEKVAQDFLRTLKTVASPMGMRVADPQLCRLQSDQPRQYIQSLKEQIKPDTEIVVCIVPNNRKDRYDAIKKITCVENPVPSQVVVSRTLSKQQMLMSVCTKIAIQLNCKLGGEVWATEIPVKKLMVIGFDVYHDSMNKGQSIGGFIAS 1501
            F++N+L  +GR L T+ ++Q  + F Y P  ADW KETRG  LIS   +  W+LI+++R+ + A   ++ L  V   MGM++    +  +  D+   Y++ L++++  DT+IVVC++ +NRKD+YDAIKK  C + P PSQ VV+RTL KQQ +M++ TKIA+Q+NCK+GGE+W  +IP+K +M++G D YHD     +SI GF+AS
Sbjct:  445 FDSNLLSFSGRILQTEKIHQGGKTFDYNPQFADWSKETRGAPLISVKPLDNWLLIYTRRNYEAANSLIQNLFKVTPAMGMQMRKAIMIEV-DDRTEAYLRVLQQKVTADTQIVVCLLSSNRKDKYDAIKKYLCTDCPTPSQCVVARTLGKQQTVMAIATKIALQMNCKMGGELWRVDIPLKLVMIVGIDCYHDMTAGRRSIAGFVAS 650

HSP 2 Score: 153.295 bits (386), Expect = 2.230e-39
Identity = 71/188 (37.77%), Postives = 124/188 (65.96%), Query Frame = 2 
Query:  344 MQKMNVQEERPRQR--RGIGEFKTRSFKDPATDKKGTSGEPVQILTNYFKVDKMPRFEGLHQYVVAFDPDIQSQKLKGFLLFSMQDVIGEVKVFDGMSLFLPRKLAEPVVERCVETRDGSSIKVKITHTNEVPVNSPQVVQLMGILFRRQLRHLNMQLVGRHYFNPSRKIDVPAHKMVVWPGFETNIL 901
             Q++++ E   R+R    +G    ++       K G+SG  V++ TN+F++   P++  L+QY + ++P +++++L+  LLF  +D+IG+   FDG  LFLP++L + V E   +TR+G  +++ IT TNE+P  SP  +Q   I+FRR L+ +N+Q +GR+Y+NP+  ID+P+H++V+WPGF T+IL
Sbjct:   71 FQELSLAERGGRRRDFHDLGVNTRQNLDHVKESKTGSSGIIVRLSTNHFRLTSRPQW-ALYQYHIDYNPLMEARRLRSALLFQHEDLIGKCHAFDGTILFLPKRLQQKVTEVFSKTRNGEDVRITITLTNELPPTSPTCLQFYNIIFRRLLKIMNLQQIGRNYYNPNDPIDIPSHRLVIWPGFTTSIL 257
The following BLAST results are available for this feature:
BLAST of TCONS_00014148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIWL19.058e-5544.44Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1 PE=1... [more]
back to top