TCONS_00014157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014157
Unique NameTCONS_00014157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014157 ID=TCONS_00014157|Name=TCONS_00014157|organism=Clytia hemisphaerica|type=transcript|length=479bp
ATTCTCTGTTTGTGTAGTTGATGAGTTGGATGAACTTTCCTGTTGATTAA
AAGTGGATTCAGTTTTGTGAAGACTTTTTGTTTTACCAAGATTGGAGCGA
GAATTTGAAGGTTTTACAAACGTTTTCGACGGCTTTACGGTAAGTGTACT
TGAAAATCTTTCAACAGCTACATCTTTTTCATTAGAGGTTTTCGAAGATT
GAACGGTAAGTTTATTCGCTGGTTTCTCTTCTGGAAGAGTGTTTCCAACT
ATGGCATTCTTAACATTCCTGCCAGCAGTATCATATCTTTCTTCGCCATG
TAATGTTTCCTTGGCAACAGTTTTCACTTTGAAAGGTGTTTGGAACTTTG
TGCCGGAACTACAACTTTGTTCTTTCTGCGTAGAATTCCCATTGAATGGT
GTACAAAATTTACGTTTTTTAGCAGATTGTCCTTGTAATGAAGGGGCAga
agattttctcatttttaatctagaaaaag
Run BLAST on NCBI

protein sequence of TCONS_00014157-protein

>TCONS_00014157-protein ID=TCONS_00014157-protein|Name=TCONS_00014157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
FSRLKMRKSSAPSLQGQSAKKRKFCTPFNGNSTQKEQSCSSGTKFQTPFK
VKTVAKETLHGEERYDTAGRNVKNAIVGNTLPEEKPANKLTVQSSKTSNE
KDVAVERFSSTLTVKPSKTFVKPSNSRSNLGKTKSLHKTESTFNQQESSS
NSSTTQTEN
Run BLAST on NCBI

transcript from alignment at sc0000181:126080..126558

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014157 ID=TCONS_00014157|Name=TCONS_00014157|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at sc0000181:126080..126558 (Clytia hemisphaerica)
ctttttctagattaaaaatgagaaaatcttcTGCCCCTTCATTACAAGGA
CAATCTGCTAAAAAACGTAAATTTTGTACACCATTCAATGGGAATTCTAC
GCAGAAAGAACAAAGTTGTAGTTCCGGCACAAAGTTCCAAACACCTTTCA
AAGTGAAAACTGTTGCCAAGGAAACATTACATGGCGAAGAAAGATATGAT
ACTGCTGGCAGGAATGTTAAGAATGCCATAGTTGGAAACACTCTTCCAGA
AGAGAAACCAGCGAATAAACTTACCGTTCAATCTTCGAAAACCTCTAATG
AAAAAGATGTAGCTGTTGAAAGATTTTCAAGTACACTTACCGTAAAGCCG
TCGAAAACGTTTGTAAAACCTTCAAATTCTCGCTCCAATCTTGGTAAAAC
AAAAAGTCTTCACAAAACTGAATCCACTTTTAATCAACAGGAAAGTTCAT
CCAACTCATCAACTACACAAACAGAGAAT

Coding sequence (CDS) from alignment at sc0000181:126080..126558

>TCONS_00014157 ID=TCONS_00014157|Name=TCONS_00014157|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000181:126080..126558 (Clytia hemisphaerica)
ttttctagattaaaaatgagaaaatcttcTGCCCCTTCATTACAAGGACA
ATCTGCTAAAAAACGTAAATTTTGTACACCATTCAATGGGAATTCTACGC
AGAAAGAACAAAGTTGTAGTTCCGGCACAAAGTTCCAAACACCTTTCAAA
GTGAAAACTGTTGCCAAGGAAACATTACATGGCGAAGAAAGATATGATAC
TGCTGGCAGGAATGTTAAGAATGCCATAGTTGGAAACACTCTTCCAGAAG
AGAAACCAGCGAATAAACTTACCGTTCAATCTTCGAAAACCTCTAATGAA
AAAGATGTAGCTGTTGAAAGATTTTCAAGTACACTTACCGTAAAGCCGTC
GAAAACGTTTGTAAAACCTTCAAATTCTCGCTCCAATCTTGGTAAAACAA
AAAGTCTTCACAAAACTGAATCCACTTTTAATCAACAGGAAAGTTCATCC
AACTCATCAACTACACAAACAGAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007923XLOC_007923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014157-exon-sc0000181-1491911889:126080..126558TCONS_00014157-exon-sc0000181-1491911889:126080..126558Clytia hemisphaericaexon
TCONS_00014157-exon-sc0000181-1510915933:126080..126558TCONS_00014157-exon-sc0000181-1510915933:126080..126558Clytia hemisphaericaexon
TCONS_00014157-exon-sc0000181-1575043694:126080..126558TCONS_00014157-exon-sc0000181-1575043694:126080..126558Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014157-proteinTCONS_00014157-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000181supercontigsc0000181:126080..126558 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.07337	2.41153	1.63654	1.21442	0.177199	0	0	0	1.43946	2.60592	1.46437	1.60862	0.786504	0.544528	2.34114	3.44305	3.55107	3.33642	2.37456	1.60782	2.13529	1.93537	2.56121	1.40977	0	0	1.71976	0.769147	0.620074	1.18873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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