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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014181 ID=TCONS_00014181|Name=TCONS_00014181|organism=Clytia hemisphaerica|type=transcript|length=718bp
TTGACTCGAGCAGAAGATGTGTATATTGGTCACGTTACTGTAGAACAAGC
ACATATGTTGCACTACAATGTAGAAGGACGTGTGGACGGTGCCTTATCCC
TCGCCCAAGACCAGTCGTTCCATCTAGAAGATGTTTCGATATTGACCGTC
GTTGTGTGTACTGGAGGAATCACGGCTATTGTCGAAGATATTATTATCAA
AATCGATGTCAAAAAACTTGTGGTGTATGTAGAGCACTTCCAACGACAAG
AGTATGCGTGGACAGAGACTCGAGATGTCCTTTTTGGGCAAGACGCTATC
AATGTTTCCTCAATTCAAGATATATGAATCGGAATTGTAAAAAATCTTGT
GGAAAATGTCCTAAACCAAAACCAAAACCAAAGCCAAGGCCAAGAACAAC
AAAGACAACGACAACCACAACAACCACAACCACATCTACGACCACTTCAA
GTAGAAAAAATCCACTTATCCCAAAGCGTACCTCGAGGGAACCTTGCCCT
TGTTGTAGATGCTCAAAATAATAGTAATAGAACAGAACGATAACAGTAAT
AGAACTAGCCGTCATCCGGGTCGCACCCGTCGATTAGAGTGTGCCTTACG
CATGACAAAGCCCTTAGGATGGTGGGTAGGGTGTTTTAGGGATTTATTCA
AACTCTAAGAACGAAAAATTACCACTTAAAATCGATCGAAATTCAACAAG
TGAAATAAGAAAACAAAG Run BLAST on NCBI transcript from alignment at sc0000183:28869..30892+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014181 ID=TCONS_00014181|Name=TCONS_00014181|organism=Clytia hemisphaerica|type=transcript|length=2024bp|location=Sequence derived from alignment at sc0000183:28869..30892+ (Clytia hemisphaerica)
TTGACTCGAGCAGAAGATGTGTATATTGGTCACGTTACTGTAGAACAAGC
ACATATGTTGCACTACAATGTAGAAGGACGTGTGGACGGTGCCTTATCCC
TCGCCCAAGACCAGTCGGTAAAGTACCTTGGACGCATTGGACGAGAACAA
TCGAAATAGTTGTTTGTACAGGCCCAACTtaccctaaaaatcaaaaattc
aaaatcaatcaCTTTCCTCAATCACTTCTTTGTTCGAATTTCTATCCGGT
TGAAATTTTACCCTTGTTTCTATTCTTTTCTCACCTTACCTTATTTGAAT
TTGAGTAAATTCATACGTAAAATAACAAAACTCTTTCAGGGAAAGAAGTC
AATTTGAGCAGATTTGAGATATATTTTGGCAAAAAGAGGCAAATCTTTTA
CAGTCGAAATTTCTCCTTATCTACTTAACATGGACCCCCGTCCGATAAAA
CATCTGTCACGTGCAGAATTAAACAgctataagaacatttttgagtCGTT
TTAGGGATATTTTTGGGTTTATTTCCTTTATATCCGCCAGTTCCATCTAG
AAGATGTTTCGATATTGACCGTCGTTGTGTGTACTGGAGGAATCACGGCT
ATTGTCGAAGATATTATTATCAAAATCGATGTCAAAAAACTTGTGGTGTA
TGTAGAGGTAagaattttttcattgcaaaaAGAATGTTTCAATGATTGTG
ATTAGAATATAGTTCTGGGATAATGCAAAGTACAAGATCTCAATGCAATA
GATACATGTGTTATCAAGCTAATGCCTTTACGTTTAACTGGCCTAACTTA
AGAGAGTTTTCAGGCTTATACAACAAGATTCAACCATCATTTAGTTGACA
GCATCAGAAGAGAGGAAAGAAGAATAAAGATAGCTAAATAGACAAAGTTA
TAACATCGGGTACAGACCCACAAATAATATAAATCTGTACTAAGCCGTCA
GAAGATGACAACAATATAAACATAAAGATATGCAATAAATTATGGGTAGC
GACTTGCTTCATATCGACTTAAGATCGTATTGACTAAAATTCATTAAACT
ACTTTTGTCTCTATCATTAGCACTTCCAACGACAAGAGTATGCGTGGACA
GAGACTCGAGATGTCCTTTTTGGGCAAGACGCTATCAATGTTTCCTCAAT
TCAAGATATATGAATCGGAATTGTAAAAAATCTTGTGGAAAATGTCCTAA
ACGTAACGACTACAACATACtatgttggacggtgaaaaagaatgcggcta
ttatattttgatttttcccgacatgtttcggactcggtccgttctcaagg
gaatgatatttctatataaaaaaaagtgtttctatacaaaattatttgac
gtcaaattggaCAAATACGTCATTTTAGGCGATTTCGGCTTGAAAATGGG
TTGGTGTAAATGGGGCCATCTGATAAGTTGAATTCGGTCTAAACGACTAC
AACATactacatacatacatacataactTCATCCCTCTCAACATACTATT
ACCATTTAAACTATGAATCAGTGCCCTTTTTTGAGTATTCGTCTGCAATC
GAGGAAAAAGTGAAAACGTTGGGtgtaaattttgaatatttagtgTACAA
TCTTTTCGCCATTTTCTTAAGTCATTCGATCTGGGTAAAATTATAGAGAT
CAGCACCTTTTCTATTTCATAGCAAAACCAAAACCAAAGCCAAGGCCAAG
AACAACAAAGACAACGACAACCACAACAACCACAACCACATCTACGACCA
CTTCAAGTAGAAAAAATCCACTTATCCCAAAGCGTACCTCGAGGGAACCT
TGCCCTTGTTGTAGATGCTCAAAATAATAGTAATAGAACAGAACGATAAC
AGTAATAGAACTAGCCGTCATCCGGGTCGCACCCGTCGATTAGAGTGTGC
CTTACGCATGACAAAGCCCTTAGGATGGTGGGTAGGGTGTTTTAGGGATT
TATTCAAACTCTAAGAACGAAAAATTACCACTTAAAATCGATCGAAATTC
AACAAGTGAAATAAGAAAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014181-exon-sc0000183-1491911889:28869..28985 | TCONS_00014181-exon-sc0000183-1491911889:28869..28985 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1510915933:28869..28985 | TCONS_00014181-exon-sc0000183-1510915933:28869..28985 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1575043694:28869..28985 | TCONS_00014181-exon-sc0000183-1575043694:28869..28985 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1491911889:29409..29525 | TCONS_00014181-exon-sc0000183-1491911889:29409..29525 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1510915933:29409..29525 | TCONS_00014181-exon-sc0000183-1510915933:29409..29525 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1575043694:29409..29525 | TCONS_00014181-exon-sc0000183-1575043694:29409..29525 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1491911889:29939..30070 | TCONS_00014181-exon-sc0000183-1491911889:29939..30070 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1510915933:29939..30070 | TCONS_00014181-exon-sc0000183-1510915933:29939..30070 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1575043694:29939..30070 | TCONS_00014181-exon-sc0000183-1575043694:29939..30070 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1491911889:30541..30892 | TCONS_00014181-exon-sc0000183-1491911889:30541..30892 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1510915933:30541..30892 | TCONS_00014181-exon-sc0000183-1510915933:30541..30892 | Clytia hemisphaerica | exon |
| TCONS_00014181-exon-sc0000183-1575043694:30541..30892 | TCONS_00014181-exon-sc0000183-1575043694:30541..30892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:28869..30892 + |
Blast
The following BLAST results are available for this feature:
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