|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014182 ID=TCONS_00014182|Name=TCONS_00014182|organism=Clytia hemisphaerica|type=transcript|length=398bp
AAAACCTCCAACTTCAAAAGTTACAACTGATGGAACCCCGCCGCCTGTTC
CAGAGGTGACAAAACCTCCGACTCCGAAAGTTACAACTGAAGAATTACCC
ATCATTCCACCAATACCGCCAATACCTCCAATACCACCAATCCCACCAAT
CCCAGCGAATCCTATGAAATGCCGTAAACAGCCCAACGGCAAGCTCGTTT
GTAAAGGAACATCACGCGTAATTTACAGAGGTGAAAACGATGAAGCGAAA
AAGAATTGAACAACAAAATACCcaaagaaagtattttaaagATAAACCCA
TAATTCACAAATTATAATTATATACAAATATCCCTTAGCAGAAAATTTGA
CTAGCACTTcttgattttcaaagaaatatatttaagatttaaaaaaat Run BLAST on NCBI transcript from alignment at sc0000183:32336..34905+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014182 ID=TCONS_00014182|Name=TCONS_00014182|organism=Clytia hemisphaerica|type=transcript|length=2570bp|location=Sequence derived from alignment at sc0000183:32336..34905+ (Clytia hemisphaerica)
AAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCTGAATCTTAGA
AGTAACCCAAAATATTAAACAGAGGATCAGTCTTAAACataacaaatctc
ttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAA
CCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCTGAATCTTAGAAGTA
ACCCAAAATATTAAACAGAGGATCAGTCTTAAACataacaaatctctttt
gacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTC
CAACTTCAAAAGTTACAAGTGAGTCAATATCTGAATCTTAGAAGTAACCC
AAAATATTAAACAGAGGATCAGTCTTAAACataacaaatctcttttgact
tTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAAC
TTCAAAAGTTACAAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAA
TATTAAACAGAGGATCAGTCTTAAACataacaaatctcttttgacttTAG
CTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCA
AAAGTTACAAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATT
AAACAGAGGATCAGTCTTAAACataacaaatctcttttgacttTAGCTGA
TGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAG
TTACAAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAAC
AGAGGATCAGTCTTAAACataacaaatctcttttgacttTAGCTGATGGA
ATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTAC
AAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAG
GATCAGTCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCC
CGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGT
GAGTCAATATCTGAATCTTAGAAATCCCTAAAAATATTAAACAGAGGATC
AGTCTTAAACataacaaatctcttttgacttTAGCTGATGGAACCCCGCC
GCCTGTTCCAGAGGTGACAAAACCTCCGACTCCGAAAGTTACAAGTAAGT
TAAAAGGGACATAACAATGATCTCAGCGTATCTGTTTTCTTAATATTCAC
CATAACCTGTGAAGAATTGACCTGATATTACAACACTATTACTATTTCAC
TTTCAGCTGAAGAATTACCCATCATTCCACCAATACCGCCAATACCTCCA
ATACCACCAATCCCACCAATCCCAGCGAATCCTATGAAATGCCGTAAACA
GGTCagaaaaacacttttgtttgttttacttACTTAGAGAGCGTTCTAGT
TCACAATCGTTCTAAACATTCTTTCGACAGCAACGGTATTAGTAagtttc
aattaaaaaaaagttcgttCCTAAAGTCTGTCACAAAGCTTTCTGAAAAC
TTTACATGGTCTATTTACGAGCTATATTAAAAAGCCCACATACCTTTATG
TTGGAAGTTCTGAAGCAAGGGAGCTTTAGAGATCTCAAATCAGACCCGCT
GAAATTTTTCATAGCTACCCCAGCGGAATTCTAAACTTCCCCGGGGAACT
GAGACAGTGAGACAAGGGTTGTCTTTATACTTTTGAAGGACAAAACAATT
GTCAGTGGTGTGTCTTTACCTTCTTCCTTTTTATAGCCCAACGGCAAGCT
CGTTTGTAAAGGAACATCACGCGTAATTTACAGAGGTGAAAACGATGAAG
CGAAAAAGAATTGAACAACAAAATACCcaaagaaagtattttaaagATAA
ACCCATAATTCACAAATTATAATTATATACAAATATCCCTTAGCAGAAAA
TTTGACTAGCACTTcttgattttcaaagaaatatatttaagatttaaaaa
aatcaagtgcACTGATCTTTTAGGAAAATGAATCGCAGCATCGCAGGGTA
TGCAGGGTATTAGAAATTTGCTATTAGAAATTATTCTGTGACCCTCTTAT
CGATTCTCCGCCGAAACAATTATTCtctgtatttattttttgtcatttaa
aGAAGGCATCAATTTCACTAATCCTTGGGAATATTTCAGAGCCATAGTAA
AATCTGTCATATTTTACGNAATTTTTCATAGCTACCCCAGCGGAATTCTA
AACTTCCCCGGGGAACTGAGACAGTGAGACAAGGGTTGTCTTTATACTTT
TGAAGGACAAAGCAATTGTCAGTGGTGTGTCTTTACCTTCTTCCTTTTTA
TAGCCCAACGGCAAGCTCGTTTGTAAAGGAACATCACGCGTAATTTACAG
AGGTGAAAACGATGAAGCGAAAAAGAATTGAACAACAAAATACCcaaaga
aagtattttaaagATAAACCCATAATTCACAAATTATAATTATATACAAA
TATCCCTTAGCAGAAAATTTGACTAGCACTTcttgattttcaaagaaata
tatttaagatttaaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014182-exon-sc0000183-1491911889:32336..32361 | TCONS_00014182-exon-sc0000183-1491911889:32336..32361 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1510915933:32336..32361 | TCONS_00014182-exon-sc0000183-1510915933:32336..32361 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1575043694:32336..32361 | TCONS_00014182-exon-sc0000183-1575043694:32336..32361 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1491911889:33470..33529 | TCONS_00014182-exon-sc0000183-1491911889:33470..33529 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1510915933:33470..33529 | TCONS_00014182-exon-sc0000183-1510915933:33470..33529 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1575043694:33470..33529 | TCONS_00014182-exon-sc0000183-1575043694:33470..33529 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1491911889:33642..33736 | TCONS_00014182-exon-sc0000183-1491911889:33642..33736 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1510915933:33642..33736 | TCONS_00014182-exon-sc0000183-1510915933:33642..33736 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1575043694:33642..33736 | TCONS_00014182-exon-sc0000183-1575043694:33642..33736 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1491911889:34689..34905 | TCONS_00014182-exon-sc0000183-1491911889:34689..34905 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1510915933:34689..34905 | TCONS_00014182-exon-sc0000183-1510915933:34689..34905 | Clytia hemisphaerica | exon |
| TCONS_00014182-exon-sc0000183-1575043694:34689..34905 | TCONS_00014182-exon-sc0000183-1575043694:34689..34905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:32336..34905 + |
Blast
The following BLAST results are available for this feature:
|
