Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014222 ID=TCONS_00014222|Name=TCONS_00014222|organism=Clytia hemisphaerica|type=transcript|length=2693bpRun BLAST on NCBI protein sequence of TCONS_00014222-protein >TCONS_00014222-protein ID=TCONS_00014222-protein|Name=TCONS_00014222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp LECVDKDGRCNSWRNLCNSNSYVKQNCYKTCNNPVCNPVITTFTCRDKDARun BLAST on NCBI transcript from alignment at sc0000183:9209..14983- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014222 ID=TCONS_00014222|Name=TCONS_00014222|organism=Clytia hemisphaerica|type=transcript|length=5775bp|location=Sequence derived from alignment at sc0000183:9209..14983- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000183:9209..14983- >TCONS_00014222 ID=TCONS_00014222|Name=TCONS_00014222|organism=Clytia hemisphaerica|type=CDS|length=12204bp|location=Sequence derived from alignment at sc0000183:9209..14983- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014222 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 2.071e-35 Identity = 93/264 (35.23%), Postives = 138/264 (52.27%), Query Frame = 2 Query: 569 LGCGINKFNNPF--ISFVVGGKITTREKWIWQAAIYHYDIF-LCGGTLVDKQYVVTAAHCVNDYGYMKDKEGFDIVLGDWDRDDKDTMREQRFRVEKVWAHPKYYKTNYDYDHDIAVIKLSKPATLNRAVGVACLPSQYEKVSLDSKCYISGWGKFS-DTSSVVKKLQEVKLPLVSNKICGGKNKDPNGRSMINENMLCAGSPKENKGSCGGDSGGPLVCQNSKKQWTLQGAVSWGSQFCDSRIMYPVFARVGNYVDWIKKQMA 1348 GCG+ + +S +V G+ W WQ ++ F CGG+L+ + +VVTAAHC + +V G++D+ D Q ++ KV+ +PK+ + ++DI ++KL+ PA ++ V CLPS + + C +GWGK + + KLQ+ LPL+SN C K GR I + M+CAG+ SC GDSGGPLVCQ WTL G VSWGS+ C S V+ARV + W++K +A Sbjct: 17 FGCGVPAIHPVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC-------GVRTSDVVVAGEFDQG-SDEENIQVLKIAKVFKNPKF--SILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAEC----KKSWGRR-ITDVMICAGA--SGVSSCMGDSGGPLVCQK-DGAWTLVGIVSWGSRTC-STTTPAVYARVAKLIPWVQKILA 261 The following BLAST results are available for this feature:
BLAST of TCONS_00014222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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