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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014227 ID=TCONS_00014227|Name=TCONS_00014227|organism=Clytia hemisphaerica|type=transcript|length=1312bp GAGAAAACAGTACAAAAACTTCGTTTAAAATGACACAAAGTGGAATATGG CGAAGGAGTTTGTTCGTATCATGTTTCATCGGACACTGTTTGTATTATGT AACCAGAAAATCGTTAACATTTTCAGTTCCCATTCTAATGGAAGATTCCA CGATGAGGATGACTAAAAGAGATTTTGGTCTGATGGCTAGCCTACAAATG ATCACGTATTCGATCGGGAAATTCTTAACTGGATTCTTAGTGGATCAATA CAGTAATAAGAAGATTTTTTGTTTCGGTTTGTTTTGTTGTGGATTGACTA ATCTGGCTTTCAGTGCTGTTGGAGAGAAAAATATGTTCTTTTGGATTGTA CTTGCCAATGGATTCTTTCAAGCTTTTGGATGGAATGCTATTGCTGTTCT GGTCAACCAATGGTACAACAAAGCGGAGATTGGGACCGTCTGGTCGCTCC TCTCTTCCACCATCAATATCGGTACCAGCATCACTCCATTCATTATCATG GTCATCACCAAAGATCATCATTGGAAAACGTGTTTCTTCATCATTGGTAG TATCACCTGTGTTTTTGCCCTCATTGCAACAGTAACCATCAAGGAGTACC AAAAACCGCTACCAGGGCTGTCAGACACCACCAAGTCTTCAGAcgataaa aataaacaatcagGAGTATCTTCCTCGACTAAAGTTGGAAATACAGCAGA TACTAATATCTCCAAAAGCTCAGATTCTTCACAGACAATATCAACAAAAA ATGAAGGCACCGGCTCCACACCAACTTCTTCACCGTTCACTCTTCTCTTC ACCAGTCCGGTGTTTTGGTTGATAAGTAGTTGTTATTTGCTGTGGTCACT GGTCAAAGTAGGATCTGAAGATTGGTTGCAATTGTATCTGCTGACTGGCA AATCCTCGTCGCAAACTGAAGGTAGGGAAAGACCGCTCTTTAAGTTAGTA AGACTGCGACTGCGTCGGAGGCGTCCCGAAGACTCCACTTTCGATGGCTA TCGACCCGAAGGTAGGGAGGGTGGCAGTATTTGTCCCTGGAttactccac ttacccttgatcattCTTTTAATTGCTAAGCATCAAGTAGAGAGGCAtcg agtaccattttggaaaccTTTGGTATGACTCGGCTGAGTGTTGAATCCAC AACCTTGTGCACAGTAGgaggatgctctaccactgcattACAGTTACTTA CCGCTCTTTACCAACGCTCATTTATATAGACTGCTGgaatccactaacgg attcctgctccttatactacatacagttttgtagaggtctgtgattcaga cttACCATTTAC Run BLAST on NCBI protein sequence of TCONS_00014227-protein >TCONS_00014227-protein ID=TCONS_00014227-protein|Name=TCONS_00014227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
ENSTKTSFKMTQSGIWRRSLFVSCFIGHCLYYVTRKSLTFSVPILMEDST MRMTKRDFGLMASLQMITYSIGKFLTGFLVDQYSNKKIFCFGLFCCGLTN LAFSAVGEKNMFFWIVLANGFFQAFGWNAIAVLVNQWYNKAEIGTVWSLL SSTINIGTSITPFIIMVITKDHHWKTCFFIIGSITCVFALIATVTIKEYQ KPLPGLSDTTKSSDDKNKQSGVSSSTKVGNTADTNISKSSDSSQTISTKN EGTGSTPTSSPFTLLFTSPVFWLISSCYLLWSLVKVGSEDWLQLYLLTGK SSSQTEGRERPLFKLVRLRLRRRRPEDSTFDGYRPEGREGGSICPWITPL TLDHSFNC Run BLAST on NCBI transcript from alignment at sc0000183:112726..116976- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014227 ID=TCONS_00014227|Name=TCONS_00014227|organism=Clytia hemisphaerica|type=transcript|length=4251bp|location=Sequence derived from alignment at sc0000183:112726..116976- (Clytia hemisphaerica) GAGAAAACAGTACAAAAACTTCGTTTAAAATGACACAAAGTGGAATATGG
CGAAGGAGTTTGTTCGTATCATGTTTCATCGGACACTGTTTGTATTATGT
AACCAGAAAATCGTTAACATTTTCAGTTCCCATTCTAATGGAAGATTCCA
CGATGAGGATGACTAAAAGAGATTTTGGTCTGATGGCTAGCCTACAAATG
ATCACGTATTCGATCGGGAAATTCTTAACTGGATTCTTAGTGGATCAATA
CAGTAATAAGAAGATTTTTTGTTTCGGTTTGTTTTGTTGTGGATTGACTA
ATCTGGCTTTCAGTGCTGTTGGAGAGAAAAATATGTTCTTTTGGATTGTA
CTTGCCAATGGATTCTTTCAAGCTTTTGGATGGAATGCTATTGCTGTTCT
GGTCAACCAATGGTACAACAAAGCGGAGGTTTCTCCTAAATTTTATTGTT
TTGATCCCTTTTTAGACCCTGGAGATCCTACAAATTAACCCTTGTCCGTC
CCCGCCCGTTCGTCTGTTACTATCTTTCCAGCTTTTCTATTTTTTTTGCA
CAAAGACAGAGGGCAAGGTCTTTAGAAAGTGGCTGAGTATTGTTTTTTTC
TATTTCTATTACATTAGCCTTCAGGTAGGTCCATTCAGTATGCAGATTTT
TCATAAAAGCTCAGTCGGTTCACTTTTAGGTATTTTTAGTTGATATCATG
CTGAATGTTTTAAAGTAAGTCTTTGAAAAAGCGGAAAGTAATTTGTATCC
TTATAATGGATCTCAACTTTGTTTTCCGAAAACCCACTTTAATTACTTTG
GGACTGGAATATCTATTTCTCGAACAAAGAATTTCCACCTTATTTCACTT
ACTCATCGATTTACAGTACATAATGAGTTTGAATGGTTTTTTTATAAACG
GTCAGGGTGAAATATTATTTTAATCATCTTGGCAATCGAAATATTATCTT
GAAGTTGAATATGCAAAAACTGAAATAATAACAAGGGACTTGAAATGCTT
TTATGAATCCCCGAGAGGTACTAGGTTTGTCGGAAGACGGGTGGTTGCCG
CCGGATTTTCGAAAATCGTATGTTTTGTACAACCCTTAACGGGAATTTAA
GAATCTAAAAATTAAGCACCCTTAAGACCAGCATCACTGTGCACTTCGTT
TGTCTAGGTACCCCCGGATCTCTAAAGAGTATCTTTTATGGATTTAGGAT
TTTTATGATAGGGATAAAAATTAATTAGACGCGTTTGAATTCTTATCTTT
TTATTTTGTTCTTTACGAATTCCCCAAATAAATGCTCAAAAATATCAAAG
AAAGTTAAAGATTTGTCAAGGACTGTAAATTCAAGTAAAAAACATTCACT
CGGAGAATTGTAAAAATCTTTTATTTTTATATTCAAAGTTATATTCTCAA
AATTTAAAATAAATGGCACTAAAACTTTAGTCCACAGCCTTTACCCTTAA
AGGTAAAAATCAAAATGCTTTAAAAATGAATAAAAATTGCCAAAATATAT
CGAATGTCAAAAATCCTTAAAAGTATCTCAAAATATTTAAAAACTTCGTA
AACCTCCCCATCCAGTATTCACCTCTCGTATGCTTTCATAATTTTGACAT
ACCTTGCTTAAAACCCAATACAGTACTAAATGATACATAACTCTTTCCCT
TTTCATTGCGAGGTTGTTTTACATAACTCGATGAAAAAACATTAATTTGT
TTGGCTTTACGTTTGATGAAATACCACAGTGAATGCCCTAATCCATTGTT
ACGATGTTTTGGGTCCACATACAATGAACCAATTTCACCAGCGTAAGTTA
GGGAAATCCAACCAACTAACTTGTCGGAATATTTTGTAAAAATACCTGGG
AATAAGCCGAATAACAAACTAATTTTAAGCTGGTCGCTTCGTAAAATGGG
TTCTCGTCCAAACTGCTCTCTTAAATTCTCTACAACTGACTCATTAAAGT
GTTCAATTGTAAGCGGCTTTATGTAATAATCGTGATGTACGGAAAAATCG
TCCTTAGAGGTTCTAGATTCAATGATATTTTCGGCAATTCCAAAATAGTA
GTTGAATACAAATCTGGTGTCTCTCTCTCCTGTAGCCTTCACAAGATCTT
CTTGCATGTCAGTGACAGTGTATAAAATCCAAGAACCTTTAGTATAAACA
TCCAACATATGTTTCAGATGCAGATCACGTTGCTGGTCATAATCAGCTGA
CCAGAATTGAAACATTTTCTTGCATTTTTTAAATTCTTCTTCCAGCCCAA
TGTAGTCATTTTCTGAAATTGTATCCCTGCCTTCAAACAGTTTCAATATT
TCTCTTGGTTGAGGATAGGTTAAAGCAATAAAGGTGCTTTCGTCTCCATT
TATGTTATCAGTGTAAATGTCAACAATCTTTCTGGTCATTGGGCTTGTCA
ATGTACTCATGATAGGGACCAAAAGTTGTTCATTCTTTTCCAAAACTCTA
CGTCTCAATTTCTCCTTGTACTCTTGTTGCCGATGTCTTGGTAAATGATC
CATGGTTAGTGTGGTGTAGCTTCTCCTGGTTCTCCTGTATAATAATATTT
TACACCTAAAACACAACATGTTCAATCTAGAATTATAATTTAACCGTTAA
CTGTTTCTCCTGATTAATATTTCCCCTATTCTAACTTATTCAATTCAAAT
AGTAAGCAGTTAACATCATGACCAATAAAACTTGCTTAACTCACAAAGAG
TTTAAACGAATTCTCTTTGTGGTACAATCCATAAAAAGTGGGCCCGAATC
TTAAACGTTATGAAAAATGAGAATGATTTTTTGATACCCCTTGTTTATAT
CTATTAGCTAGCAGATAATAAACCTATGTCATGTGTGTTAGAATTTCGTG
TTCTTGCTTTTTCTAGTACAAGTGCTACTCATACACTATCTAAACACTTC
ATATTTTGTTTCTTGTTATTTCGCCCAAATTTGTTTTTGAAGAGGTTACA
AAATGTAATATGATGTCACTCTAAATTACCCTTTAATGATGAATGATGGT
AATGACAGTTCAATTTAATCCTATTTTTGTAAATATAATTAAAATGAGTT
CGTCCACTTTAAAAAGCTACTGCTGTCAAAATCCAAAGTCCAAAGATCTG
TCTGTCACCTGGGGGTCCTTAGGATCAAATATTGGGAGCATCAGGTCTTT
GATCAAAACAAACAGATTATTCGACAGATCTAAAACAACTGTAACAAACT
GTAAGCAAAAAAAAAATTTCGTGTATCATTTCATTATATGACCATGAGAA
ATTTTGCATACTGAATCCTAAATTCCCAGCAATGTGGAAATTAGGGACAT
ATAATAAGAGAAGTCCAAGCCCACCCTATACCATGTCATAAGATGTTTTT
TTGGCTCATCTTTACAGATTGGGACCGTCTGGTCGCTCCTCTCTTCCACC
ATCAATATCGGTACCAGCATCACTCCATTCATTATCATGGTCATCACCAA
AGATCATCATTGGAAAACGTGTTTCTTCATCATTGGTAGTATCACCTGTG
TTTTTGCCCTCATTGCAACAGTAACCATCAAGGAGTACCAAAAACCGCTA
CCAGGGCTGTCAGACACCACCAAGTCTTCAGACGATAAAAATAAACAATC
AGGAGTATCTTCCTCGACTAAAGTTGGAAATACAGCAGATACTAATATCT
CCAAAAGCTCAGATTCTTCACAGACAATATCAACAAAAAATGAAGGCACC
GGCTCCACACCAACTTCTTCACCGTTCACTCTTCTCTTCACCAGTCCGGT
GTTTTGGTTGATAAGTAGTTGTTATTTGCTGTGGTCACTGGTCAAAGTAG
GATCTGAAGATTGGTTGCAATTGTATCTGCTGACTGGCAAATCCTCGTCG
CAAACTGAAGGTAGGGAAAGACCGCTCTTTAAGTTAGTAAGACTGCGACT
GCGTCGGAGGCGTCCCGAAGACTCCACTTTCGATGGCTATCGACCCGAAG
GTAGGGAGGGTGGCAGTATTTGTCCCTGGATTACTCCACTTACCCTTGAT
CATTCTTTTAATTGCTAAGCATCAAGTAGAGAGGCATCGAGTACCATTTT
GGAAACCTTTGGTATGACTCGGCTGAGTGTTGAATCCACAACCTTGTGCA
CAGTAGGAGGATGCTCTACCACTGCATTACAGTTACTTACCGCTCTTTAC
CAACGCTCATTTATATAGACTGCTGGAATCCACTAACGGATTCCTGCTCC
TTATACTACATACAGTTTTGTAGAGGTCTGTGATTCAGACTTACCATTTA
C Coding sequence (CDS) from alignment at sc0000183:112726..116976- >TCONS_00014227 ID=TCONS_00014227|Name=TCONS_00014227|organism=Clytia hemisphaerica|type=CDS|length=2154bp|location=Sequence derived from alignment at sc0000183:112726..116976- (Clytia hemisphaerica) ATTGGGACCGTCTGGTCGCTCCTCTCTTCCACCATCAATATCGGTACCAG CATCACTCCATTCATTATCATGGTCATCACCAAAGATCATCATTGGAAAA CGTGTTTCTTCATCATTGGTAGTATCACCTGTGTTTTTGCCCTCATTGCA ACAGTAACCATCAAGGAGTACCAAAAACCGCTACCAGGGCTGTCAGACAC CACCAAGTCTTCAGACGATAAAAATAAACAATCAGGAGTATCTTCCTCGA CTAAAGTTGGAAATACAGCAGATACTAATATCTCCAAAAGCTCAGATTCT TCACAGACAATATCAACAAAAAATGAAGGCACCGGCTCCACACCAACTTC TTCACCGTTCACTCTTCTCTTCACCAGTCCGGTGTTTTGGTTGATAAGTA GTTGTTATTTGCTGTGGTCACTGGTCAAAGTAGGATCTGAAGATTGGTTG CAATTGTATCTGCTGACTGGCAAATCCTCGTCGCAAACTGAAGGTAGGGA AAGACCGCTCTTTAAGTTAGTAAGACTGCGACTGCGTCGGAGGCGTCCCG AAGACTCCACTTTCGATGGCTATCGACCCGAAGGTAGGGAGGGTGGCAGT ATTTGTCCCTGGATTACTCCACTTACCCTTGATCATTCTTTTAATTGCTA AGAAAACAGTACAAAAACTTCGTTTAAAATGACACAAAGTGGAATATGGC GAAGGAGTTTGTTCGTATCATGTTTCATCGGACACTGTTTGTATTATGTA ACCAGAAAATCGTTAACATTTTCAGTTCCCATTCTAATGGAAGATTCCAC GATGAGGATGACTAAAAGAGATTTTGGTCTGATGGCTAGCCTACAAATGA TCACGTATTCGATCGGGAAATTCTTAACTGGATTCTTAGTGGATCAATAC AGTAATAAGAAGATTTTTTGTTTCGGTTTGTTTTGTTGTGGATTGACTAA TCTGGCTTTCAGTGCTGTTGGAGAGAAAAATATGTTCTTTTGGATTGTAC TTGCCAATGGATTCTTTCAAGCTTTTGGATGGAATGCTATTGCTGTTCTG GTCAACCAATGGTACAACAAAGCGGAGATTGGGACCGTCTGGTCGCTCCT CTCTTCCACCATCAATATCGGTACCAGCATCACTCCATTCATTATCATGG TCATCACCAAAGATCATCATTGGAAAACGTGTTTCTTCATCATTGGTAGT ATCACCTGTGTTTTTGCCCTCATTGCAACAGTAACCATCAAGGAGTACCA AAAACCGCTACCAGGGCTGTCAGACACCACCAAGTCTTCAGACGATAAAA ATAAACAATCAGGAGTATCTTCCTCGACTAAAGTTGGAAATACAGCAGAT ACTAATATCTCCAAAAGCTCAGATTCTTCACAGACAATATCAACAAAAAA TGAAGGCACCGGCTCCACACCAACTTCTTCACCGTTCACTCTTCTCTTCA CCAGTCCGGTGTTTTGGTTGATAAGTAGTTGTTATTTGCTGTGGTCACTG GTCAAAGTAGGATCTGAAGATTGGTTGCAATTGTATCTGCTGACTGGCAA ATCCTCGTCGCAAACTGAAGGTAGGGAAAGACCGCTCTTTAAGTTAGTAA GACTGCGACTGCGTCGGAGGCGTCCCGAAGACTCCACTTTCGATGGCTAT CGACCCGAAGGTAGGGAGGGTGGCAGTATTTGTCCCTGGATTACTCCACT TACCCTTGATCATTCTTTTAATTGCTAAGAAAACAGTACAAAAACTTCGT TTAAAATGACACAAAGTGGAATATGGCGAAGGAGTTTGTTCGTATCATGT TTCATCGGACACTGTTTGTATTATGTAACCAGAAAATCGTTAACATTTTC AGTTCCCATTCTAATGGAAGATTCCACGATGAGGATGACTAAAAGAGATT TTGGTCTGATGGCTAGCCTACAAATGATCACGTATTCGATCGGGAAATTC TTAACTGGATTCTTAGTGGATCAATACAGTAATAAGAAGATTTTTTGTTT CGGTTTGTTTTGTTGTGGATTGACTAATCTGGCTTTCAGTGCTGTTGGAG AGAAAAATATGTTCTTTTGGATTGTACTTGCCAATGGATTCTTTCAAGCT TTTGGATGGAATGCTATTGCTGTTCTGGTCAACCAATGGTACAACAAAGC GGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00014227-exon-sc0000183-1575043694:116549..116976 | TCONS_00014227-exon-sc0000183-1575043694:116549..116976 | Clytia hemisphaerica | exon |
TCONS_00014227-exon-sc0000183-1575043694:112726..113609 | TCONS_00014227-exon-sc0000183-1575043694:112726..113609 | Clytia hemisphaerica | exon |
TCONS_00014227-exon-sc0000183-1510915933:116549..116976 | TCONS_00014227-exon-sc0000183-1510915933:116549..116976 | Clytia hemisphaerica | exon |
TCONS_00014227-exon-sc0000183-1510915933:112726..113609 | TCONS_00014227-exon-sc0000183-1510915933:112726..113609 | Clytia hemisphaerica | exon |
TCONS_00014227-exon-sc0000183-1491911889:116549..116976 | TCONS_00014227-exon-sc0000183-1491911889:116549..116976 | Clytia hemisphaerica | exon |
TCONS_00014227-exon-sc0000183-1491911889:112726..113609 | TCONS_00014227-exon-sc0000183-1491911889:112726..113609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000183 | supercontig | sc0000183:112726..116976 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005215 | transporter activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0006810 | transport |
GO:0055085 | transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055085 |
transmembrane transport |
biological_process |
GO:0006810 |
transport |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0005215 |
transporter activity |
Blast
BLAST of TCONS_00014227 vs. Swiss-Prot (Human)
Match: G6PT1 (Glucose-6-phosphate exchanger SLC37A4 OS=Homo sapiens GN=SLC37A4 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.093e-27 Identity = 76/294 (25.85%), Postives = 134/294 (45.58%), Query Frame = 3
Query: 42 GIWRRSLFVSCFIGHCLYYVTRKSLTFSVPILMEDSTMRMTKRDFGLMASLQMITYSIGKFLTGFLVDQYSNKKIFCFGLFCCGLTNLAFSAVGEKNMFFWIVLANGFFQAFGWNAIAVLVNQWYNKAEIGTVWSLLSSTINIGTSITPFIIMVITKDHHWKTCFFIIGSITCVFALIATVTIKEYQKPLPGLSDTTKSSDDKNKQSGVSSSTKVGNTAXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXPVFWLISSCYLLWSLVKVGSEDWLQLYLLTGKSSSQTEG 923
G +R +F + F G+ LYY RK+ +F +P L+E+ + + K D G + S Q Y+I KF++G L DQ S + +F GL GL N+ F+ +F + NG Q GW ++ +W+ ++ GT W++LS+++N+ + P + ++ + + W++ + G++ V + + + I + +P +D + D G S K +T L SP W++S+ YL+ VK DW Q +L+ K S G
Sbjct: 7 GYYRTVIFSAMFGGYSLYYFNRKTFSFVMPSLVEE--IPLDKDDLGFITSSQSAAYAISKFVSGVLSDQMSARWLFSSGLLLVGLVNIFFAWSSTVPVFAALWFLNGLAQGLGWPPCGKVLRKWFEPSQFGTWWAILSTSMNLAGGLGPILATILAQSYSWRSTLALSGALCVVVSFLCLLLI--HNEP----ADVGLRNLDPMPSEGKKGSLKEEST------------------------------LQELLLSPYLWVLSTGYLVVFGVKTCCTDWGQFFLIQEKGQSALVG 262
The following BLAST results are available for this feature:
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