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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014230 ID=TCONS_00014230|Name=TCONS_00014230|organism=Clytia hemisphaerica|type=transcript|length=4609bpRun BLAST on NCBI transcript from alignment at sc0000183:136122..149542- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014230 ID=TCONS_00014230|Name=TCONS_00014230|organism=Clytia hemisphaerica|type=transcript|length=13421bp|location=Sequence derived from alignment at sc0000183:136122..149542- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014230 vs. Swiss-Prot (Human)
Match: AT2B3 (Plasma membrane calcium-transporting ATPase 3 OS=Homo sapiens GN=ATP2B3 PE=1 SV=3) HSP 1 Score: 1157.9 bits (2994), Expect = 0.000e+0 Identity = 615/1133 (54.28%), Postives = 793/1133 (69.99%), Query Frame = 3
Query: 159 FEVSPTDLSEFMKNRGKESITALEEKFGDINGLVRKLKSSSQRGLMNINANLEARQNVFGVNFIPPKPAKTFLQLVFEALEDTILRILIVAAIVSLVLGMVIE-------------------SVETGWIEGXXXXXXXXXXXXXXXXNDWQKEKQFRQLQGKIDQEQTVDVIRGGNVVKIPSTDLVVGDLCNIQYGDLVPADGIIIQASDLKVDESSLTGESDIVKKTFEKDIGLLSGTHVMEGSGKFIVTAVGPNSQSGVIMMLLGA-----------------GKKPDQXXXXXXXXXXXXLMQDVDLADG-----XXXXXXXXXXXXQSILQNKLTRLAVSIGWLGXXXXXXXXXXXXXRFSVETYGIQKESWDNK----HLINFLRAFIVGLTILVVAIPEGLPLAVTISLAYSVKKMLIDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVESYIQGNHFKNIPSQDTLGLEFIDVLCQGIAINSNYSSRIEASEDGQGLPTQLGNKTECALLGFVLELGETYQHFRDSHQEKDFVKIFTFNSKRKSMSTVIKKKDGGYRLFTKGASEMVLSKCRYIIQDPSMKAEQFTESDNEALVKTAIEPMASNGLRTICIAYRDFPEDLGVPDWEDESVIVDDLTCLAIVGIEDPVRPEVPNAIKNCQSAGITVRMVTGDNVNTARSIAFKCGILKPNDDFLVIEGKEFNRRIKDENGKVRQELIDKLWPQIRVMARSSPEDKYILVKGIIDSKLNKNREIVAVTGDGTNDGPALKKADVGFAMGIQGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFIQFQLTVNLXXXXXXXXXXXXXMESPLSATQLLWVNLIMDSFASLALATEQPTPDLLERKPYGRTKPLISRSMLRFIFGHGLYQLVCMIVLCFYGHILFDIEYGFGRSHGAAPTQHLTIVFNTFVLMQVFNEINARKVHGERNVFHNFMANKLFSVIVIGTLLFQILLVEFFGRAFSVTSLTIEQWMWCMFLGFTELLWGQVVVSIPKFTIPKRFRLGSKGVSLSETDQGP-------------------------MGRVLWMRSLSRLQYQIRVVNAFRSNL-DGQQRTKNIISPAVFNSLVAP 3344
F + +L M+ RG E++ +EE +GD++GL R+LK+S GL + +LE R+ ++G NFIPPK KTFLQLV+EAL+D L IL VAAIVSL L E GWIEG AIL++V V LVTA NDW KEKQFR LQ +I+QEQ VIR G ++++P LVVGD+ ++YGDL+PADG++IQA+DLK+DESSLTGESD V+K+ +KD LLSGTHVMEGSG+ +VTAVG NSQ+G+I LLGA + Q + + MQ + A+G +E+ KKE+S+LQ KLT+LAV IG G++ + IT I++++ F +ET+ ++ +W + ++ F++ FI+G+T+LVVA+PEGLPLAVTISLAYSVKKM+ DNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVV+SY+ H+K IP+ L + +D+L I+INS Y+++I E LP Q+GNKTECALLGFVL+L +Q R+ E K++TFNS RKSMSTVI+ DGG+RLF+KGASE++L KC I+ + + + F D + +V+ IEPMA +GLRTICIAYRDF PDW++E+ +V DLTC+A+VGIEDPVRPEVP AI+ CQ AGITVRMVTGDN+NTAR+IA KCGI++P +DFL +EGKEFNRRI++E G++ QE +DK+WP++RV+ARSSP DK+ LVKGIIDS + R++VAVTGDGTNDGPALKKADVGFAMGI GTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKF+QFQLTVN+VA+ +A GA +SPL A Q+LWVNLIMD+FASLALATE PT LL RKPYGR KPLISR+M++ I GH +YQL + L F G + FDI+ G + P++H TI+FNTFV+MQ+FNEINARK+HGERNVF +N +F IV+GT QI++V+F G+ FS + L+ EQW+WC+F+G EL+WGQV+ +IP S+ L E GP G++LW R L+R+Q QIRVV AFRS+L +G ++ ++ S + N + P
Sbjct: 27 FGCTLAELRTLMELRGAEALQKIEEAYGDVSGLCRRLKTSPTEGLADNTNDLEKRRQIYGQNFIPPKQPKTFLQLVWEALQDVTLIILEVAAIVSLGLSFYAPPGEESEACGNVSGGAEDEGEAEAGWIEGAAILLSVICVVLVTAFNDWSKEKQFRGLQSRIEQEQKFTVIRNGQLLQVPVAALVVGDIAQVKYGDLLPADGVLIQANDLKIDESSLTGESDHVRKSADKDPMLLSGTHVMEGSGRMVVTAVGVNSQTGIIFTLLGAGGEEEEKKDKKGKQQDGAMESSQTKAKKQDGAVAMEMQPLKSAEGGEMEEREKKKANAPKKEKSVLQGKLTKLAVQIGKAGLVMSAITVIILVLYFVIETFVVEGRTWLAECTPVYVQYFVKFFIIGVTVLVVAVPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSYLGDTHYKEIPAPSALTPKILDLLVHAISINSAYTTKILPPEKEGALPRQVGNKTECALLGFVLDLKRDFQPVREQIPEDKLYKVYTFNSVRKSMSTVIRMPDGGFRLFSKGASEILLKKCTNIL-NSNGELRGFRPRDRDDMVRKIIEPMACDGLRTICIAYRDFSAGQE-PDWDNENEVVGDLTCIAVVGIEDPVRPEVPEAIRKCQRAGITVRMVTGDNINTARAIAAKCGIIQPGEDFLCLEGKEFNRRIRNEKGEIEQERLDKVWPKLRVLARSSPTDKHTLVKGIIDSTTGEQRQVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACITQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLLRKPYGRDKPLISRTMMKNILGHAVYQLAIIFTLLFVGELFFDIDSGRNAPLHSPPSEHYTIIFNTFVMMQLFNEINARKIHGERNVFDGIFSNPIFCTIVLGTFGIQIVIVQFGGKPFSCSPLSTEQWLWCLFVGVGELVWGQVIATIPT----------SQLKCLKEAGHGPGKDEMTDEELAEGEEEIDHAERELRRGQILWFRGLNRIQTQIRVVKAFRSSLYEGLEKPESKTS--IHNFMATP 1145 The following BLAST results are available for this feature:
BLAST of TCONS_00014230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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