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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014234 ID=TCONS_00014234|Name=TCONS_00014234|organism=Clytia hemisphaerica|type=transcript|length=2639bpRun BLAST on NCBI protein sequence of TCONS_00014234-protein >TCONS_00014234-protein ID=TCONS_00014234-protein|Name=TCONS_00014234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp MSGEKKQVAQPPSAFKNFVAGGVGGTCLVLTGQPLDTIKVRLQTQNVKPGRun BLAST on NCBI transcript from alignment at sc0000183:150544..168441- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014234 ID=TCONS_00014234|Name=TCONS_00014234|organism=Clytia hemisphaerica|type=transcript|length=17898bp|location=Sequence derived from alignment at sc0000183:150544..168441- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000183:150544..168441- >TCONS_00014234 ID=TCONS_00014234|Name=TCONS_00014234|organism=Clytia hemisphaerica|type=CDS|length=10098bp|location=Sequence derived from alignment at sc0000183:150544..168441- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014234 vs. Swiss-Prot (Human)
Match: MCAT (Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1) HSP 1 Score: 325.865 bits (834), Expect = 2.700e-103 Identity = 172/288 (59.72%), Postives = 214/288 (74.31%), Query Frame = 3
Query: 84 QPPSAFKNFVAXXXXXXXXXXXXQPLDTIKVRLQTQNVK-PGETPFYTGTLDCAKKTIQKEGFRGLYKGIMTPLVGVTPIYALCFLGFGVGKKLQTKDPNEELTLLQIGNAGLLAGVFTTVIMAPGERIKCLLQLQTGDPKNAKYKGALDCAKQLYKEEGLFRGVYRGTAATLLRDVPASAAYFAGYEMLLRSLTPEGKSRADMSPLRILVAGGSAGILNWIVAIGPDTLKSRFQTAPAGTY-TGVRDVFTQMVRTEGISALFKGLTPVMLRAFPANAACFLGYELAM 941
+P S KN +AGG GG CLV G PLDT+KVRLQTQ PG+ P Y+GT DC +KT+ +EG GLY+G+ P++GVTP++A+CF GFG+GKKLQ K P + L+ Q+ AG+L+GVFTT IM PGERIKCLLQ+Q +KY G LDCAK+LY+E G+ RG+Y+GT TL+RDVPAS YF YE L TPEGK +++S RILVAGG AGI NW VAI PD LKSRFQTAP G Y G RDV +++R EG+++L+KG VM+RAFPANAACFLG+E+AM
Sbjct: 6 KPISPLKNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLFAAGMLSGVFTTGIMTPGERIKCLLQIQASS-GESKYTGTLDCAKKLYQEFGI-RGIYKGTVLTLMRDVPASGMYFMTYEWLKNIFTPEGKRVSELSAPRILVAGGIAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIRDEGVTSLYKGFNAVMIRAFPANAACFLGFEVAM 291 HSP 2 Score: 83.9593 bits (206), Expect = 2.488e-17 Identity = 62/173 (35.84%), Postives = 95/173 (54.91%), Query Frame = 3
Query: 156 PLDTIKVRLQTQNVKPGETPFYTGTLDCAKKTIQKEGFRGLYKGIMTPLVGVTPIYALCFLGFGVGKKLQTKDPN--EELTLLQIGNAGLLAGVFTTVIMAPGERIKCLLQLQTGDPKNAKY-KGALDCAKQLYKEEGLFRGVYRGTAATLLRDVPASAAYFAGYEMLLRSLT 665
P + IK LQ Q GE+ YTGTLDCAKK Q+ G RG+YKG + L+ P + F+ + K + T + EL+ +I AG +AG+F + P + +K + QT P KY G D ++L ++EG+ +Y+G A ++R PA+AA F G+E+ ++ L
Sbjct: 130 PGERIKCLLQIQ-ASSGESK-YTGTLDCAKKLYQEFGIRGIYKGTVLTLMRDVPASGMYFMTYEWLKNIFTPEGKRVSELSAPRILVAGGIAGIFNWAVAIPPDVLKS--RFQTAPP--GKYPNGFRDVLRELIRDEGV-TSLYKGFNAVMIRAFPANAACFLGFEVAMKFLN 295 The following BLAST results are available for this feature:
BLAST of TCONS_00014234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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