TCONS_00014249 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014249
Unique Name	TCONS_00014249
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2137

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000183:361203..373418-
coding sequence from alignment at sc0000183:361203..373418-

transcript sequence

>TCONS_00014249 ID=TCONS_00014249|Name=TCONS_00014249|organism=Clytia hemisphaerica|type=transcript|length=2137bp
CAACAAAAGAGTCTTGCTGTGCTACTAAAGATccttggaaaaataatttt
tcacaaagccGAGGAGACTGTttgcaagaaaaaaaatcgtCCTCACAAAA
GATACCTCCCTCCTTCATACCACAATGAAATcaAACATTACAACAACATT
ACAACCAACAATATACCAACCATCTCACCTGATGGAACAGCTTTTCCACC
TCCATGATCAAGGTGAAAATATATCACGTACAAACCTCTTGTATGGATGT
GACGGTCAAATCTCTGACACCATCCCACCACCAGAAGCCTATACTGTAGC
TACCGttatatttttaacaataatCGTATCAGTTTTTGGTAACTCACTCA
TCATTGTTGCAGTGTATAGAATCAAACTTTTACAAACTCCAACAAATGCA
CTGCTATGTTCTCTAGCAATAACTGACCTTTTAGGTCCAATAGTACGGCT
ACTTTCATTGGGAATCGCAATGGTTCTTGGGAAATGGACGTTCGGTTGTA
ACTGGTGTGTGGTATCATCAACTCTGGGAATCTTATTTGGAGCAGGTTCA
ATTAATCACTTGTGTTTGATCAGTGTGGAAAGGTGTATCACCATTAACTT
GCCCTACAAAGCAAAACAATTTATTCATAAACGTTCGATAACTGTGGCGA
TTTTTATCGTATGGACTGTATCTATAGTCTGCTCGCTTTTACCATTCTTT
GGAGTCGGGCTAGTGCGGTTCACGCCGACTATGTTAGACTGTGAAGTTTA
TCTTGGAAATGAACCAAAACTGGGGCTAGTGCTCGGTGGAGTATATTTTA
TATTCCCTTTCACTGTCATGGTGATTGTTTATACTTTAATATTTTGTATC
AGCGTCCGAAAACAAACTAAACAGATGTTTACTTATTCAATCGGACGGcg
tgaagaaaaacaaaaacaaaagatgaaaGCAGAAATGAAAGCATTGAAAA
CAGTCATGATTGTTGTTGGGTTTTTCATCTTATTGTGGTTACCCTACTTC
ATCACCAGTGGTTTGGAACCTTTCCATCCATCCATGGTACCCTCTTGGTG
GAAACGATTTAGTTTCATACTAGCGTATATGAATAGTTGTTGTAATTGGA
TTGTGTATGGAGTCCGGAACAAACAAATGAGAAATGCTTTCAAAAGTGTT
TTAGGGATCTCAAATAAACGAAGAACTTCGGAAGCGTCTGAAAAGTCGAT
TGCAAGTCAAACGAAATCAACACGACGTCATGTATTCAAATGTCaagatt
ttaatgaaaataattcaaattcttAAAGTGTATATCTTTTACTTCTGTAA
TCCTTTCTAGAATAAGAATATGGTGCGACCCTTGTCATTGTCTGTACACA
TACctagtatctacggctaatttcaaaatagcataccgcagtgaatctaa
aaatagacattgatttttctgtttgaccgaaattcaatcccatcaccctt
cgCGTTAACTACGCCTGCATGCAAATTACACTCAACTACAAANNNNNNNN
NNNNNNNNNNNNNNNNNTTCACGACTTTttaattaagacgaaaaggattg
tgggattgattttcggtcaagtgttaaaagtaataattatgacgtttgca
taacggtgtgctattcattgccgtagagggtctgttgttattgtcttttc
tgacttgagatttttcaaaccttccgctgcgatggagtgttggtgagaga
ggggataggcgatgagagaagtgttgctatttataaatcatacttcatcg
cagaggtccccgtacgggaatttttttatcaaacagacaatgcgcacaga
gtgtactacgaaacgataaacgtgagatacactctgctACAGAGTACCCT
AGTCACAGATCACGTGGAATAAATCTGCAAAAATTTTTCCCAACGAGAAA
AATACCATCATCCTCATTGGAAAACTAGGTCAAAAATCTCATAAGAAATG
TTGTTGAAATTTCTCCACTAGATTTTTGAAGGTGAATTTCCAGGCACAAT
GGTACCTAGCCAtataaaatagaaatattgaAATCGGGTCACTGAGGCAG
GGATGGTATCAtcccaaaaaagggatttaAAGACtcataaaagtgaaaaa
aatgtttttaagattttttagtAATACTTCATTTTGC

Run BLAST on NCBI

protein sequence of TCONS_00014249-protein

>TCONS_00014249-protein ID=TCONS_00014249-protein|Name=TCONS_00014249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MKSNITTTLQPTIYQPSHLMEQLFHLHDQGENISRTNLLYGCDGQISDTI
PPPEAYTVATVIFLTIIVSVFGNSLIIVAVYRIKLLQTPTNALLCSLAIT
DLLGPIVRLLSLGIAMVLGKWTFGCNWCVVSSTLGILFGAGSINHLCLIS
VERCITINLPYKAKQFIHKRSITVAIFIVWTVSIVCSLLPFFGVGLVRFT
PTMLDCEVYLGNEPKLGLVLGGVYFIFPFTVMVIVYTLIFCISVRKQTKQ
MFTYSIGRREEKQKQKMKAEMKALKTVMIVVGFFILLWLPYFITSGLEPF
HPSMVPSWWKRFSFILAYMNSCCNWIVYGVRNKQMRNAFKSVLGISNKRR
TSEASEKSIASQTKSTRRHVFKCQDFNENNSNS

Run BLAST on NCBI

transcript from alignment at sc0000183:361203..373418-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014249 ID=TCONS_00014249|Name=TCONS_00014249|organism=Clytia hemisphaerica|type=transcript|length=12216bp|location=Sequence derived from alignment at sc0000183:361203..373418- (Clytia hemisphaerica)
CAACAAAAGAGTCTTGCTGTGCTACTAAAGATCCTTGGAAAAATAATTTT
TCACAAAGCCGAGGAGACTGTTTGCAAGAAAAAAAATCGTCCTCACAAAA
GATACCTCCCTCCTTCATACCACAATGAAATGTAAGTAAAACTATAATTT
AATTCTCTACCAATTACACTCCCAAACTGACACGACCAGATGGTTTTATT
TTATTTGGAAATGAACAATTTGGTTATCTACCATTTTTAGAGACTCTAAC
TAAAATTTGAAAAATTAACGAGAAGAATTTCGAGAATGTGTTTCGAACAA
GTACAAGTCAAGGAAACCGTCTTGGTGTACGGTCATGCTCTTGATGTGCT
AACGTGTCTTTAAAAAAGGGCGTTTGAAATTTTTTGCTCAATCTTTTTGC
TTGGCTATTAGTTTTTTGATTTTCTGTTGCTTTTTGGCTTGGTTTATTGA
TTTCTTTTTCTGGTTTAATTGTTATTATGAGTCAAAAGACAAGAAGCTCA
ACTGAACTTGCTAAGATGATAGAAGAAATATTAGACAACAGACTTGAAAN
AAAAAAGCGGTTGAAATTATTGGATGAAGCTAAAGAGTTTATCACTAAGG
ACTGCAACGTTGATTTTGTTTTTGCGGACATCAATTGCAACACTGTTGCA
AGATTGAAGTCAAACCAATACAATTTTTTTGACAATATTGATTCGTTCAA
GAGTAAGATCTTGAAAACAGTTTTTTTTTTCTGTTGTGATTTTGTTTTTC
GTCAAACTCTACATTGTTTCTCTCATAACATTTTTATAAACCGAATTTTT
CTCCTACTTTAGCTATTTTCCTCGGTGACTTTAACGCAAGAAACTCAGTT
TGGCGGACTGGTGATATTACAAATTCTCAGGGAGAGGACATTAGCGAGTT
AGCTTCACAATATGGGTTACATCAACTAATTGATGAGCCGACTCATCTTC
GTCCTGGGTGTTCTCCTACTTGCATTGATCTTATTTTTTCATCTTCGCGG
ACTCCTATTTTAGATTCCGGGGTTTTACCTTTACTTAATCCACGTTGCCA
CCACCAGATACCCTTCGTAAAACAAAACTTTCGAACTATATTCCCTCCAG
CTTATAAACGCAAGATTTGGGACTTTTCTCGTGCTGATAAGAGGGGAATC
GTGCTTGCCCTGAATGCCATTGATTGGGAAACCTCCTTTTTGGGACTCAA
CGTAGAAGATCGTGTTTCCCTTCTCTCTGAATATATACTTAATATTATTT
CTAATTTTGTTCCAAATAAAACTATCACCATCAGAGACAAAGATGCGTTA
TGGATGACTCCTGAGATTAAGCAGATGCTTTTGGATAAGGCTAAGATTTA
TCGTCGTTGGAGAAAATGGGGAAGTCCTTTAGATGGTCAGACACTTGATG
ACATGGTTGACAGGTGCAGATTGGCCATTTAGACTGCCAAGGATAGTTAT
TTTTCTCGTCTTGGCAACTTTTTAAAGGATCCAAACATAAGAAGTAAGAA
ATACTGGTCTACTCTGAAGCAGTTTCTGAACGTACGTAAATCCCCGAAAA
TTCCACCTATTCGAGATGAAAGAAACGTCCTTGTAAGTGATGTTTCTGAG
AAGGCCGATATTTTTAACTCTTTTTTCTCAAACCAATGCTCACTTATCGA
TACTGGCAGTGTTTTGCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCACCT
GAACAATTTCTTACTAACTCTAGACTGGATAATCTTGTATTTGAAGAAGA
AAAAATCGAGTCTATTATTAATTCTTTGAATGTTAACAAAGCCCATGCAT
GGGTGGGATAATAATTCTACTCGTATGATCAGAATCTGTGGTAAGTCTCT
AGTAAAACCCTTGCTTAGCATATTCAATCTTTCTATCAACTCTGGCATCT
TCCCATCACAGTTGAAGAAAGGTAACGTGGTTCCTGTCTATAAAAAGGGA
GACAGGAGCATAGCCAAAAACTGCAGACCAGTGTCTCTTCTTCCTGTGTT
TGGAAAAATATATGAAAAGTGTATTTACGATACACTTTACAGGTATTTTG
AAAACAATAACTTATTTTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGATCCTTCTCTAGATACCAGGGGGGTGTTTTTAGATATTTCA
AAGGCATTCGATCGGGTGTGGCACGATGGCTTACTCTTTAAACTTAAATC
TTATGGGGTGACTGGACCGTTGCTTTCCTTAATTCGCAGCTTTCTTAACG
ATAGGTATCAGAGAGTTGCGTTGAATGGGATAACATCTGAGTGGAAGCGA
ATCAATGCTGGGGTACCTCAAGGCTCGATTCTTGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAATCTCATGTTTTTGATGTTCCTGACATT
CAAGGAGTGATCTTTCTTAATCGACTTCGGGTCGGTTTCAGCCATCTCAA
CGAGCATAAATTTAGACATGGCTTCAGCGACACTTTAGACCCTTTCTGTG
GTTGCCGAACTAACTCTGTGGAAAACACTCAGCACTTTCTTCTGCACTGC
TCTATATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTCTGTCGGCTTTTATTATATGGGGATGAAAGTTTGAGTTCA
AATCTAAATAAATCTATTCTTTGTTCTGTTGTTGAATTTCTTAACGAAAC
TGGAGGGTTTAGCGGTGCTTTATTTTAGGCTTTTACCTTACAATTGTAGC
TTCCTTCTCCAAGATTTTTTTTTTCTTTATTTACTTATTTATCTATTTTT
TACATAGTCTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAATTAACGCGTTGC
CAAAATAACTTCCTCGCGAAAGTAAATATTATTCACTAAAATTATAAAAA
TTACTGCCTCGCCAAAATAAGTTTTATGCCAAATTTTAGGAATCTTTGCT
GCTCACCAAAAATATTAGCTATTTCGTAAAAATGAGTTCCCTTAAATTGA
TCTAGCGAAGTAGATCATCAGCTCTTGTTATTGGGAAGGTGGGACACCAA
GTTGAAGGAAACTCAGAGCCACATCCATCTTATGGCTATCATCAAAACTG
CTAACTGAAAAAATTCTTAGGTTTCATGGAACCTTGTTTTCTATGTTTGA
TACGAAGATTTTTCACGGCTTTATTTTGGAATTTATCTTCTAAGTAACAG
AAAAACAAATTAGCGAAAGGTTTTAAGTTGCAAATGTTCTAATCAACTCT
TACAATATACCGCCTGAAAACATCTTCGACCGCGGGAAGAAAAGTTTAAA
AAAGTATATGTTTGTAAAACATGCTCTTGTTTCTTGGTATGAAAATCGAT
TTAAAATCTGAGAATGTAAAATTTCATTGAGATTGATTTTATTGAATAAA
TTGGAACATGTTCATTTACGATTTTTACTGAAATTATTACATAGGTAAGT
TTTATTGATAAAGGATTTTCTTTGGAGACATAAGATGACGGAAAGATGAT
TTTGAAGGAACGAGTTTATGTCACCCTTTTTTGCCTGGTTCTTATCGGCA
TCATTTTTTAGTTCGTGGTCTGCCATAAAAAGGCTGTCGTGAAAAGGGAT
AGCGGTGTTGGATGAAAATGATCCATTATAGATTATATAAGATTTCCAAC
TGTTTACTAAACCGAAAGAAGATATTTTAAAACCACTTTTCAGTATTTCG
AAGCCTGTTTAGTTATTTACAGATTTTACAGATTTTACAGATTTTTAAAC
TCAAGAGAATGTGTCAAGAAAGGTGTACACAGCCTTAAACTCAAATCTTT
TTCTGAAATTGAATTCACTTGAATTGTAAACTTTCAATAATGGGACTGTA
TATATTAGGGGGGGTTCAGGGGGTATCCGATTCCGAAATTGCGCCAATTA
TTTCCCCAAATTCCGTCAAACCGTCTAAAAAAGGAATAAAATTCCGCCAC
CGAAAATTCCTTTGAAATTCAAGGCTAATGTCAAAATTTCGAATATTTTT
TGTCAATTCCCAAATCCCGCACTAAAATTGTCCAATTTCCCGTCTTCGTC
AGAGACTAAATTCCGAAATTCCGTCGATCGATAAGGGGCCGATTCCGCTC
CACCGCCAACCCCCAGCCTCCATATTAGAACAATCAGTACATAATCATAC
CTTTATCATAAGAGCTTGTTGGAAAGGGGAAAAGTTTGTATGGTTTCAGA
CTATAATGAAAGACATTCCAGTAATCGTGTAAACGATTTTTAAAGTGGAT
ATTCTTTTCAAATGACAAAACATTGTCAATCGCTTCAAAAGAGTTTGCTG
ATATAAAGCAAACATCACACTGACACATCAAAGGAATCTCGTTGTTGAAA
ATGTCCTCGAGTTAAAAGCCAAGATAAGAGAGTTTCTTTTTAATTTCAAG
AACCATCTTAGAATTATCATATAGATCATGGTAAAGTAAATACTGTTAAA
TATTTTTTGATTTGGATTGATTTCTAGCTTGCCTTTTGTATTTATGAACT
TTTTGAATTTAGTGTAGTGGATATGACAAAGTAAAGAGGTTGTCATTGGA
ATCTTGTTTGAGATTGAAATTGACCATACATTGAAAGTTATCCTTCTTAT
AAATTTAAAGAAAAACAACAATGTTTTTAAAATTGAGCAAAAGCTTTTCG
ATTAAAAATCATCTTCAGTGCTACAAATGATGTTAAAAATTGGAAATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
AAAATAAGCCATGAAACAGCCATTCCCTTTACCAAAAATTCACACTTGAA
ATTTGACAAGATTCAAGATGGCGGGTTTGTTTTGATTGTCATAAATCCGG
AACTACTAGCAGTACCGGTGTAAAATTTTCCGGGAATGTTCTTTGTGGCT
CTAAGTAGCGACAGTAAAAATTTGGAGTCGCTCCAAGAGCCAGAAGGGCT
AATATTGCAATTTTCGTGATGGGCGGCGGGGTGGGCGTTTGGGGCGGACC
ACAAAGTCTGCTCGGGTACGTGTCTAAAAACCTAAAGTTTTCGACTTTCC
TCTTCTTTATATGAAATAAAACTTCGGGATATTGTTCAGCAAGGTTCAAA
CTTTAATTTAAACCAAAAATTGAAAAATCGACCCGAAAAAGATGATCCTA
TCTCAGAAGTGTTAACGACCACCTTAAGAGAATATGTAAAAAGTAATTAA
AATAATTGGCTAAGTTACTCCATTTCGGAAAAGAATTAATCGGTTTGAGT
CTAGTTGGTCATTTAAAGACGGTCTCTTGAGGGCTATGATAGATGCCTCT
AAGTTCTTCCGTAAAACAGTTTTCTCAGAGGCATTAAAGATGNTGAAGAT
GATTTTTAATCGAAAAGCTTTTGCTCAATTTTAAAAACATTGTTGTTTTT
CTTTAAATTTATTTTTGGAATGGCAAAATTTCAAAATATCCTTCTTATGT
TTTGGAAGTAAGAATCTTTCGAAATTGGTTGACTGCTGATTGGCTTCAAC
TAACTTGATAACAGCTGTTCATAATTTTCATACGGGCAGTAACCTCTGAA
TAAGGCACTTAAAAATTAACCATCAGAGGAAAATAGTCCTCCCGCAGAAA
ATTGTGCGCCGGAAAGTCAAAAACTAAATTTTCCAGCCCTATTTCAAGTT
TCGCTAGTTTGTTATCGTTCCCAGCCCACTCTTGGAAATGTGGTCCTCAA
GAAAATCAGATTGTATTGTTTTCACCCATCCCTTTCACCCATCTCACCAA
TCACAATCTGATCTCGGGGTTAGAAGCAATGTAACTTCATTTTACACAGA
AAATGAACACTTTTAAGCTAAGCTGGAACCCTGGATAGCTTTTATCAGAG
TAGCAATACGATTTTAACCTTTCAAAGCCGCTAACTTATTTGAAAAAGGC
CAAAAAGTTCATCAATTTTTTCTGGAAATTTATTTTTTCAAAGGCAATTT
CTCGACCAGGACAAACGATTCAGGTATCAACTTTGGTATTGTTGGAAAGC
TCTTTCTCTCAGCTACAAAAAATAGCGATTTTTTTTCTCTGAATCTGAAG
TGGTCAGGAGTTATGACCAAAAGACTGTGTATCGGTAAAATGACCTTTTC
AAAACGTATATATACGTATTTCGACTCCTAAGGGTTAACACGGACTCAAT
TGTTTTTCATTTTTCATTTAAAATGCCTTTATCTACTTTCTCTTAGTACC
AATAGTCATTTTGGACAGTTTGGACCAGTTATAAAGATTTGAAAATTTTT
TATTAAGATGATAACAACAAGGGGGCAGGTTTAAGTTGAAGATTAATTCA
TTTTTTAATGATAAACTCAGCAAGACACAACTGTTAGGAGTAGGCTTGTT
AGTTTTGTGTTTTCACAGTTTGTTAAAATGTAATTTTACGTTCTACATTC
TTGAAAGCTAGAACTAACGTTGGACCATTTCATTGTAGGGTTTCACTTGA
TTTTTATGCTTCAAGATAGGATCTGCTTTAACTTTGGCTTCTAACTGTTT
ATTTCTAATTTCTTCGATTCTTCTTCGGTATTTAGATATTTTTGTTTAAT
TTATAAAGATTACCACCTCTTTTCAGAATGCTACAGATAATTTGACAGTG
TAATTTTAGACACCCCTGTTTCAGTGGCCCGGTGAGATTGAGCTAGTTCA
TTGGGATGGAGAGTCGTATGCTTTTAATGGATGACTGATTTTTCATTTGG
TCGTGTGATTACATTTTTCGACGTTTAACTTGCTCTGAACTTTGAAAGTG
ATTGATAAACTTTTATTAATTGGAAACCCAAATATTCTATCACACCTCAT
CAACTAGATTTTGATAGGAATTTAATGCAACGAAATTGATTTGGTGCTGA
GTCGAATTAGAAATACGATTTTAAGACAAGTCATCAGTTTTAAAGGAAAA
GTCTTGGGTAAAGTAATTTTAAAGAGCTTTTCTATGTATCCCGAGTTTAT
CGTTCTACATCTGCAATTTGAGCTTTACTATAGCTCATTTGACGTCAATC
GATACTTCTATTATCAGCCGGATTGAGAGAGAGAGATATACGAGTGAAGG
TAGTTTTCTATGTTTAAATTCAGTATGAAATACGCAATTTGTCTGTGATG
AGTAACCTCCACTAGCAGTGTTAAAATACTATGATAGAAGAGTTTTCCTT
TCTCTGGGCCGATTCCAATTTCATGAGATCCTGTGTTAGAAGTTGAATTG
TCTCGTTAGAGTTCAGGAGGTCAGAGACAGTGAATTTATATTCCATTTCT
TCATTTTCAGCAAACATTACAACAACATTACAACCAACAATATACCAACC
ATCTCACCTGATGGAACAGCTTTTCCACCTCCATGATCAAGGTGAAAATA
TATCACGTACAAACCTCTTGTATGGATGTGACGGTCAAATCTCTGACACC
ATCCCACCACCAGAAGCCTATACTGTAGCTACCGTTATATTTTTAACAAT
AATCGTATCAGTTTTTGGTAACTCACTCATCATTGTTGCAGTGTATAGAA
TCAAACTTTTACAAACTCCAACAAATGCACTGCTATGTTCTCTAGCAATA
ACTGACCTTTTAGGTCCAATAGTACGGCTACTTTCATTGGGAATCGCAAT
GGTTCTTGGGAAATGGACGTTCGGTTGTAACTGGTGTGTGGTATCATCAA
CTCTGGGAATCTTATTTGGAGCAGGTTCAATTAATCACTTGTGTTTGATC
AGTGTGGAAAGGTGTATCACCATTAACTTGCCCTACAAAGCAAAACAATT
TATTCATAAACGTTCGATAACTGTGGCGATTTTTATCGTATGGACTGTAT
CTATAGTCTGCTCGCTTTTACCATTCTTTGGAGTCGGGCTAGTGCGGTTC
ACGCCGACTATGTTAGACTGTGAAGTTTATCTTGGAAATGAACCAAAACT
GGGGCTAGTGCTCGGTGGAGTATATTTTATATTCCCTTTCACTGTCATGG
TGATTGTTTATACTTTAATATTTTGTATCAGCGTCCGAAAACAAACTAAA
CAGATGTTTACTTATTCAATCGGACGGCGTGAAGAAAAACAAAAACAAAA
GATGAAAGCAGAAATGAAAGCATTGAAAACAGTCATGATTGTTGTTGGGT
TTTTCATCTTATTGTGGTTACCCTACTTCATCACCAGTGGTTTGGAACCT
TTCCATCCATCCATGGTACCCTCTTGGTGGAAACGATTTAGTTTCATACT
AGCGTATATGAATAGTTGTTGTAATTGGATTGTGTATGGAGTCCGGAACA
AACAAATGAGAAATGCTTTCAAAAGTGTTTTAGGGATCTCAAATAAACGA
AGAACTTCGGAAGCGTCTGAAAAGTCGATTGCAAGTCAAACGAAATCAAC
ACGACGTCATGTATTCAAATGTCAAGATTTTAATGAAAATAATTCAAATT
CTTAAAGTGTATATCTTTTACTTCTGTAATCCTTTCTAGAATAAGAATAT
GGTGCGACCCTTGTCATTGTCTGTACACATACCTAGTATCTACGGCTAAT
TTCAAAATAGCATACCGCAGTGAATCTAAAAATAGACATTGATTTTTCTG
TTTGACCGAAATTCAATCCCATCACCCTTCGCGTTAACTACGCCTGCATG
CAAATTACACTCAACTACAAANNNNNNNNNNNNNNNNNNNNNNNNNTTCA
CGACTTTTTAATTAAGACGAAAAGGATTGTGGGATTGATTTTCGGTCAAG
TGTTAAAAGTAATAATTATGACGTTTGCATAACGGTGTGCTATTCATTGC
CGTAGAGGGTCTGTTGTTATTGTCTTTTCTGACTTGAGATTTTTCAAACC
TTCCGCTGCGATGGAGTGTTGGTGAGAGAGGGGATAGGCGATGAGAGAAG
TGTTGCTATTTATAAATCATACTTCATCGCAGAGGTCCCCGTACGGGAAT
TTTTTTATCAAACAGACAATGCGCACAGAGTGTACTACGAAACGATAAAC
GTGAGATACACTCTGCTACAGAGTACCCTAGTCACAGATCACGTGGAATA
AATCTGCAAAAATTTTTCCCAACGAGAAAAATACCATCATCCTCATTGGA
AAACTAGGTCAAAAATCTCATAAGAAATGTTGTTGAAATTTCTCCACTAG
ATTTTTGAAGGTGAATTTCCAGGCACAATGGTACCTAGCCATATAAAATA
GAAATATTGAAATCGGGTCACTGAGGCAGGGATGGTATCATCCCAAAAAA
GGGATTTAAAGACTCATAAAAGTGAAAAAAATGTTTTTAAGATTTTTTAG
TAATACTTCATTTTGC

Coding sequence (CDS) from alignment at sc0000183:361203..373418-

>TCONS_00014249 ID=TCONS_00014249|Name=TCONS_00014249|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0000183:361203..373418- (Clytia hemisphaerica)
CAAACATTACAACAACATTACAACCAACAATATACCAACCATCTCACCTG
ATGGAACAGCTTTTCCACCTCCATGATCAAGGTGAAAATATATCACGTAC
AAACCTCTTGTATGGATGTGACGGTCAAATCTCTGACACCATCCCACCAC
CAGAAGCCTATACTGTAGCTACCGTTATATTTTTAACAATAATCGTATCA
GTTTTTGGTAACTCACTCATCATTGTTGCAGTGTATAGAATCAAACTTTT
ACAAACTCCAACAAATGCACTGCTATGTTCTCTAGCAATAACTGACCTTT
TAGGTCCAATAGTACGGCTACTTTCATTGGGAATCGCAATGGTTCTTGGG
AAATGGACGTTCGGTTGTAACTGGTGTGTGGTATCATCAACTCTGGGAAT
CTTATTTGGAGCAGGTTCAATTAATCACTTGTGTTTGATCAGTGTGGAAA
GGTGTATCACCATTAACTTGCCCTACAAAGCAAAACAATTTATTCATAAA
CGTTCGATAACTGTGGCGATTTTTATCGTATGGACTGTATCTATAGTCTG
CTCGCTTTTACCATTCTTTGGAGTCGGGCTAGTGCGGTTCACGCCGACTA
TGTTAGACTGTGAAGTTTATCTTGGAAATGAACCAAAACTGGGGCTAGTG
CTCGGTGGAGTATATTTTATATTCCCTTTCACTGTCATGGTGATTGTTTA
TACTTTAATATTTTGTATCAGCGTCCGAAAACAAACTAAACAGATGTTTA
CTTATTCAATCGGACGGCGTGAAGAAAAACAAAAACAAAAGATGAAAGCA
GAAATGAAAGCATTGAAAACAGTCATGATTGTTGTTGGGTTTTTCATCTT
ATTGTGGTTACCCTACTTCATCACCAGTGGTTTGGAACCTTTCCATCCAT
CCATGGTACCCTCTTGGTGGAAACGATTTAGTTTCATACTAGCGTATATG
AATAGTTGTTGTAATTGGATTGTGTATGGAGTCCGGAACAAACAAATGAG
AAATGCTTTCAAAAGTGTTTTAGGGATCTCAAATAAACGAAGAACTTCGG
AAGCGTCTGAAAAGTCGATTGCAAGTCAAACGAAATCAACACGACGTCAT
GTATTCAAATGTCAAGATTTTAATGAAAATAATTCAAATTCTTAAATGAA
ATCAAACATTACAACAACATTACAACCAACAATATACCAACCATCTCACC
TGATGGAACAGCTTTTCCACCTCCATGATCAAGGTGAAAATATATCACGT
ACAAACCTCTTGTATGGATGTGACGGTCAAATCTCTGACACCATCCCACC
ACCAGAAGCCTATACTGTAGCTACCGTTATATTTTTAACAATAATCGTAT
CAGTTTTTGGTAACTCACTCATCATTGTTGCAGTGTATAGAATCAAACTT
TTACAAACTCCAACAAATGCACTGCTATGTTCTCTAGCAATAACTGACCT
TTTAGGTCCAATAGTACGGCTACTTTCATTGGGAATCGCAATGGTTCTTG
GGAAATGGACGTTCGGTTGTAACTGGTGTGTGGTATCATCAACTCTGGGA
ATCTTATTTGGAGCAGGTTCAATTAATCACTTGTGTTTGATCAGTGTGGA
AAGGTGTATCACCATTAACTTGCCCTACAAAGCAAAACAATTTATTCATA
AACGTTCGATAACTGTGGCGATTTTTATCGTATGGACTGTATCTATAGTC
TGCTCGCTTTTACCATTCTTTGGAGTCGGGCTAGTGCGGTTCACGCCGAC
TATGTTAGACTGTGAAGTTTATCTTGGAAATGAACCAAAACTGGGGCTAG
TGCTCGGTGGAGTATATTTTATATTCCCTTTCACTGTCATGGTGATTGTT
TATACTTTAATATTTTGTATCAGCGTCCGAAAACAAACTAAACAGATGTT
TACTTATTCAATCGGACGGCGTGAAGAAAAACAAAAACAAAAGATGAAAG
CAGAAATGAAAGCATTGAAAACAGTCATGATTGTTGTTGGGTTTTTCATC
TTATTGTGGTTACCCTACTTCATCACCAGTGGTTTGGAACCTTTCCATCC
ATCCATGGTACCCTCTTGGTGGAAACGATTTAGTTTCATACTAGCGTATA
TGAATAGTTGTTGTAATTGGATTGTGTATGGAGTCCGGAACAAACAAATG
AGAAATGCTTTCAAAAGTGTTTTAGGGATCTCAAATAAACGAAGAACTTC
GGAAGCGTCTGAAAAGTCGATTGCAAGTCAAACGAAATCAACACGACGTC
ATGTATTCAAATGTCAAGATTTTAATGAAAATAATTCAAATTCTTAAATG
AAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007965	XLOC_007965	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00014249-protein	TCONS_00014249-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00014249-exon-sc0000183-1575043694:373288..373418	TCONS_00014249-exon-sc0000183-1575043694:373288..373418	Clytia hemisphaerica	exon
TCONS_00014249-exon-sc0000183-1575043694:361203..363208	TCONS_00014249-exon-sc0000183-1575043694:361203..363208	Clytia hemisphaerica	exon
TCONS_00014249-exon-sc0000183-1510915933:373288..373418	TCONS_00014249-exon-sc0000183-1510915933:373288..373418	Clytia hemisphaerica	exon
TCONS_00014249-exon-sc0000183-1510915933:361203..363208	TCONS_00014249-exon-sc0000183-1510915933:361203..363208	Clytia hemisphaerica	exon
TCONS_00014249-exon-sc0000183-1491911889:373288..373418	TCONS_00014249-exon-sc0000183-1491911889:373288..373418	Clytia hemisphaerica	exon
TCONS_00014249-exon-sc0000183-1491911889:361203..363208	TCONS_00014249-exon-sc0000183-1491911889:361203..363208	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000183	supercontig	sc0000183:361203..373418 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0657475	0.0377384	1.46265	3.12541	1.35875	0.670413	0.0380821	0.103878	0.0200996	0	0	0	0.118465	0	0.0404198	0.155245	0.0441843	0.0428683	0.0480534	0	0.0662422	0	0	0.0298215	0.0772857	0.0762917	0.0447329	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

Blast

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BLAST of TCONS_00014249 vs. Swiss-Prot (Human)
Match: ADA1A (Alpha-1A adrenergic receptor OS=Homo sapiens GN=ADRA1A PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.151e-26
Identity = 97/347 (27.95%), Postives = 156/347 (44.96%), Query Frame = 2

Query:  236 LLYGCDGQISDTIPPPEAYTVATVIFLTIIVS------VFGNSLIIVAVYRIKLLQTPTNALLCSLAITDLLGPIVRLLSLGIAMVLGKWTFGCNWCVVSSTLGILFGAGSINHLCLISVERCITINLPYKAKQFIHKRSITVAIFIVWTVSIVCSLLPFFGVGLVRFTPTMLD---CEVYLGNEPKLGLVLGGVYFIFPFTVMVIVYTLIFCISVR------------KQTKQMFTYSIGRRXXXXXXXXXXXX-----------------XXLKTVMIVVGFFILLWLPYFITSGLEPFHPSMVPSWWK-RFSFILAYMNSCCNWIVYGVRNKQMRNAFKSVLGI 1159
             L G     S+   PP    ++  I L +I+       V GN L+I++V   + L + T+  + +LA+ DLL     L    I  VLG W FG  +C + + + +L    SI  LC+IS++R I ++ P +    + +R   +A+  VW +S+V S+ P FG       P   D   C++    EP   L      F  P  +++++Y  ++ ++ R            K   +  T  I R+         A                   KA KT+ IVVG F+L WLP+F+   +  F P   PS    +  F L Y+NSC N I+Y   +++ + AF++VL I
Sbjct:    3 FLSGNASDSSNCTQPPAPVNISKAILLGVILGGLILFGVLGNILVILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGYWAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRRGLMALLCVWALSLVISIGPLFGWR----QPAPEDETICQI--NEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGLKTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPSETVFKIVFWLGYLNSCINPIIYPCSSQEFKKAFQNVLRI 343

The following BLAST results are available for this feature:

BLAST of TCONS_00014249 vs. Swiss-Prot (Human)

BLAST of TCONS_00014249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADA1A	3.151e-26	27.95	Alpha-1A adrenergic receptor OS=Homo sapiens GN=AD...	[more]

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TCONS_00014249 (transcript) - C. hemisphaerica