TCONS_00014260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014260
Unique NameTCONS_00014260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014260 ID=TCONS_00014260|Name=TCONS_00014260|organism=Clytia hemisphaerica|type=transcript|length=225bp
GAAAACGAAATGTCAAATTTGCTGCTGGCACTAAAGAGGAAGATGGCAAA
GGACCATCAGGATTGCAAAAAGTTGGTTCAGCTGTTTtgaatgttatttt
gaatcgcAAGAAGAACAAAGGAAGGatccaaaaaattgagaatgCATCTA
TTTGGccttacttgtttttatttgtcatctttttgacattttctatttat
tttgttgattatTTGCACCGTTGGG
Run BLAST on NCBI

transcript from alignment at sc0000183:118562..118786

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014260 ID=TCONS_00014260|Name=TCONS_00014260|organism=Clytia hemisphaerica|type=transcript|length=225bp|location=Sequence derived from alignment at sc0000183:118562..118786 (Clytia hemisphaerica)
CCCAACGGTGCAAataatcaacaaaataaatagaaaatgtcaaaaagatg
acaaataaaaacaagtaaggCCAAATAGATGcattctcaattttttggat
CCTTCCTTTGTTCTTCTTgcgattcaaaataacattcaAAACAGCTGAAC
CAACTTTTTGCAATCCTGATGGTCCTTTGCCATCTTCCTCTTTAGTGCCA
GCAGCAAATTTGACATTTCGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007973XLOC_007973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014260-exon-sc0000183-1491911889:118562..118786TCONS_00014260-exon-sc0000183-1491911889:118562..118786Clytia hemisphaericaexon
TCONS_00014260-exon-sc0000183-1510915933:118562..118786TCONS_00014260-exon-sc0000183-1510915933:118562..118786Clytia hemisphaericaexon
TCONS_00014260-exon-sc0000183-1575043694:118562..118786TCONS_00014260-exon-sc0000183-1575043694:118562..118786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:118562..118786 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
80.061	71.3802	29.7847	13.9364	57.0682	60.9406	47.0542	79.8435	34.6967	34.6208	62.5725	22.8515	33.469	45.8172	35.0701	34.8478	54.95	39.6014	13.3739	15.2671	17.6932	12.9452	70.8144	46.4971	19.6475	25.2065	9.40968	11.716	29.1973	40.0944
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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