TCONS_00014264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014264
Unique NameTCONS_00014264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014264 ID=TCONS_00014264|Name=TCONS_00014264|organism=Clytia hemisphaerica|type=transcript|length=746bp
CTGGTGATATTACAAATTCTCAGGGAGAGGACATTAGCGAGTTAGCTTCA
CAATATGGGTTACATCAACTAATTGATGAGCCGACTCATCTTCGTCCTGG
GTGTTCTCCTACTTGcattgatcttattttttcatcttcgcggACTCCTA
TTTTAGATTCCGGGGTTTTACCTTTACTTAATCCACGTTGCCACCACCAG
ATACCCTTCGTAAAACAAAACTTTCGAACTATATTCCCTCCAGCTTATAA
ACGCAAGATTTGGGACTTTTCTCGTGCTGATAAGAGGGGAATCGTGCTTG
CCCTGAATGCCATTGATTGGGAAACCTCCTTTTTGGGACTCAACGTAGAA
GATCGTGTTTCCCTTCTCTCTGAATATATACTTAATattatttctaattt
tgttCCAAATAAAACTATCACCATCAGAGACAAAGATGCGTTATGGATGA
CTCCTGAGATTAAGCAGATGCTTTTGGATAAGGCTAAGATTTATCGTCGT
TGGAGAAAATGGGGAAGTCCTTTAGATGGTCAGACACTTGATGACATGGT
TGACAGGTGCAGATTGGCCATTTAGACTGCCAAGgatagttatttttctc
gtctTGGCAACTTTTTAAAGGATCCAAACATAAgaagtaagaaatactgg
tctactCTGAAGCAGTTTCTGAACGTACGTAAATCCCCGAAAATTCCACC
TATTCGAGATGAAAGAAACGTCCTTGTAAGTGATGTTTCTGAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00014264-protein

>TCONS_00014264-protein ID=TCONS_00014264-protein|Name=TCONS_00014264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
GDITNSQGEDISELASQYGLHQLIDEPTHLRPGCSPTCIDLIFSSSRTPI
LDSGVLPLLNPRCHHQIPFVKQNFRTIFPPAYKRKIWDFSRADKRGIVLA
LNAIDWETSFLGLNVEDRVSLLSEYILNIISNFVPNKTITIRDKDALWMT
PEIKQMLLDKAKIYRRWRKWGSPLDGQTLDDMVDRCRLAI
Run BLAST on NCBI

transcript from alignment at sc0000183:371816..372561

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014264 ID=TCONS_00014264|Name=TCONS_00014264|organism=Clytia hemisphaerica|type=transcript|length=746bp|location=Sequence derived from alignment at sc0000183:371816..372561 (Clytia hemisphaerica)
CTTCTCAGAAACATCACTTACAAGGACGTTTCTTTCATCTCGAATAGGTG
GAATTTTCGGGGATTTACGTACGTTCAGAAACTGCTTCAGagtagaccag
tatttcttacttcTTATGTTTGGATCCTTTAAAAAGTTGCCAagacgaga
aaaataactatcCTTGGCAGTCTAAATGGCCAATCTGCACCTGTCAACCA
TGTCATCAAGTGTCTGACCATCTAAAGGACTTCCCCATTTTCTCCAACGA
CGATAAATCTTAGCCTTATCCAAAAGCATCTGCTTAATCTCAGGAGTCAT
CCATAACGCATCTTTGTCTCTGATGGTGATAGTTTTATTTGGaacaaaat
tagaaataatATTAAGTATATATTCAGAGAGAAGGGAAACACGATCTTCT
ACGTTGAGTCCCAAAAAGGAGGTTTCCCAATCAATGGCATTCAGGGCAAG
CACGATTCCCCTCTTATCAGCACGAGAAAAGTCCCAAATCTTGCGTTTAT
AAGCTGGAGGGAATATAGTTCGAAAGTTTTGTTTTACGAAGGGTATCTGG
TGGTGGCAACGTGGATTAAGTAAAGGTAAAACCCCGGAATCTAAAATAGG
AGTccgcgaagatgaaaaaataagatcaatgCAAGTAGGAGAACACCCAG
GACGAAGATGAGTCGGCTCATCAATTAGTTGATGTAACCCATATTGTGAA
GCTAACTCGCTAATGTCCTCTCCCTGAGAATTTGTAATATCACCAG

Coding sequence (CDS) from alignment at sc0000183:371816..372561

>TCONS_00014264 ID=TCONS_00014264|Name=TCONS_00014264|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000183:371816..372561 (Clytia hemisphaerica)
CTAAATGGCCAATCTGCACCTGTCAACCATGTCATCAAGTGTCTGACCAT
CTAAAGGACTTCCCCATTTTCTCCAACGACGATAAATCTTAGCCTTATCC
AAAAGCATCTGCTTAATCTCAGGAGTCATCCATAACGCATCTTTGTCTCT
GATGGTGATAGTTTTATTTGGaacaaaattagaaataatATTAAGTATAT
ATTCAGAGAGAAGGGAAACACGATCTTCTACGTTGAGTCCCAAAAAGGAG
GTTTCCCAATCAATGGCATTCAGGGCAAGCACGATTCCCCTCTTATCAGC
ACGAGAAAAGTCCCAAATCTTGCGTTTATAAGCTGGAGGGAATATAGTTC
GAAAGTTTTGTTTTACGAAGGGTATCTGGTGGTGGCAACGTGGATTAAGT
AAAGGTAAAACCCCGGAATCTAAAATAGGAGTccgcgaagatgaaaaaat
aagatcaatgCAAGTAGGAGAACACCCAGGACGAAGATGAGTCGGCTCAT
CAATTAGTTGATGTAACCCATATTGTGAAGCTAACTCGCTAATGTCCTCT
CCCTGAGAATTTGTAATATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007977XLOC_007977Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014264-proteinTCONS_00014264-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014264-exon-sc0000183-1491911889:371816..372561TCONS_00014264-exon-sc0000183-1491911889:371816..372561Clytia hemisphaericaexon
TCONS_00014264-exon-sc0000183-1510915933:371816..372561TCONS_00014264-exon-sc0000183-1510915933:371816..372561Clytia hemisphaericaexon
TCONS_00014264-exon-sc0000183-1575043694:371816..372561TCONS_00014264-exon-sc0000183-1575043694:371816..372561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:371816..372561 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20639	1.47338	1.79529	1.65645	3.58413	2.6892	1.9536	2.30605	1.50317	2.07999	1.33869	1.65177	1.47769	1.53809	1.12544	1.7714	2.11242	2.31137	0.772532	1.76378	1.14978	1.40206	0.581642	0.482078	1.06817	1.30685	1.9316	1.24734	1.53608	1.74427
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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