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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014280 ID=TCONS_00014280|Name=TCONS_00014280|organism=Clytia hemisphaerica|type=transcript|length=1502bpRun BLAST on NCBI protein sequence of TCONS_00014280-protein >TCONS_00014280-protein ID=TCONS_00014280-protein|Name=TCONS_00014280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp QKRNMKLSGILLVLTLINLVGCVPLPLLFNEDNIETYGYESWKMKLNKLQRun BLAST on NCBI transcript from alignment at sc0000185:168584..177941+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014280 ID=TCONS_00014280|Name=TCONS_00014280|organism=Clytia hemisphaerica|type=transcript|length=9358bp|location=Sequence derived from alignment at sc0000185:168584..177941+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000185:168584..177941+ >TCONS_00014280 ID=TCONS_00014280|Name=TCONS_00014280|organism=Clytia hemisphaerica|type=CDS|length=3255bp|location=Sequence derived from alignment at sc0000185:168584..177941+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014280 vs. Swiss-Prot (Human)
Match: CATO (Cathepsin O OS=Homo sapiens GN=CTSO PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.554e-45 Identity = 78/190 (41.05%), Postives = 109/190 (57.37%), Query Frame = 1
Query: 628 AFVGSEQIEMYWAIKTGTLVERSPQELLSCS-PSLGCEGGNTCLALQWLEKTRIVLETEKNYPYEEKDTACRQVNKTMEGPRVDAVCGCQNLVNREDAMLRILDQKGPLSVNVDAVQWHDYIGGIIQHHCTNKNMNHAVQLIGYDLVSGPIPYYIARNQWGKSFGEDGYVRIKYGDNQCGIAQQPSFIQV 1194
AF +E +AIK L + S Q+++ CS + GC GG+T AL WL K ++ L + YP++ ++ C + + G + + ++ED M + L GPL V VDAV W DY+GGIIQHHC++ NHAV + G+D +G PY+I RN WG S+G DGY +K G N CGIA S I V
Sbjct: 134 AFSVVGAVESAYAIKGKPLEDLSVQQVIDCSYNNYGCNGGSTLNALNWLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGY-SAYDFSDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGIIQHHCSSGEANHAVLITGFDK-TGSTPYWIVRNSWGSSWGVDGYAHVKMGSNVCGIADSVSSIFV 321 HSP 2 Score: 55.4546 bits (132), Expect = 1.554e-45 Identity = 38/118 (32.20%), Postives = 55/118 (46.61%), Query Frame = 3
Query: 294 ERRFLTFLKSLERHQFMNERERANNGTAVYGINKFSDWTTQEFKTLILSSTQQTFEEEAAHATPIAARETPITAKQQHKDINDRACTYYLKPYPQKVDWKDK--VTRIKNQG-SGICW 638
ER F +SL RH+++N + N TA YGIN+FS +EFK + L S F P + + H I + + P + DW+DK VT+++NQ G CW
Sbjct: 38 EREAAAFRESLNRHRYLNSLFPSENSTAFYGINQFSYLFPEEFKAIYLRSKPSKF---------------PRYSAEVHMSIPNVS-------LPLRFDWRDKQVVTQVRNQQMCGGCW 133 The following BLAST results are available for this feature:
BLAST of TCONS_00014280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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