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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014283 ID=TCONS_00014283|Name=TCONS_00014283|organism=Clytia hemisphaerica|type=transcript|length=2779bp
tcgaattacaaaatgattcgaatgtttttgttcgatttcgattttgaaca
aaaaataaaatcaaaaaaccattttcagtTTCTGTTTTATTGGAAGGAGA
GAGTtattcatcaaattttgaaattatggcATCAATCACTGAAGAAAAAC
TGTCTCCAGATGTTGACAGAACTTTTACGAAAGAAAACCATTCAATGTCT
CCTGAATCGGTAAAGgacaatattgaaatcaaaaGTGATGCTGTTTTAGA
TGAAATTGCTGCCAAAGTTGATGCTTtggattttaacaaaaaaagcgACG
GagaagatgatgatgattttatAACCGAAACCGAGACTGAAGTTCAAACC
ATTAATAGACAATCAGAAATCATTAAGAAACAAGCTGAAACTATCAATAC
ATTGATTCAGCAATTGCGTGTCATGTTTGATGAATATAATGCTGCTTGCC
AAGAGAAAGAATATTATGAAGATTTGAGTGAAGCTTTATTTCGTTACATC
GAGATTTGTGAAGGTAATATCGGTATTCAAGAAGAAGTTTGTACTCAAAG
TGGAGAggatgaaaatatttcaaatctaaTCACCAAAGATCAAGATGAAA
CGACCACCGAAAGTGGTGATGGTGCTACGGATCCAAAACCGACCCCAGAT
CGAGTCGAAAAACAAGCCGAACCCACTACAACAGACCAAGACCAACCAAC
TGAATCTATGGCGGTTGATGATTCAGAAACAACCGCCCCACCACCACCTC
CACCCAAACAACGTATTTCTAACAAcgagttaatccgattaaatcACATC
CTATTGAAAGAATTGATCGAGTTACGAAATGAGCGTGATATGTTAcgaga
aaatgttttcttttctggAGATGATGCCAGCGAATCTTCAGATGCGTTAA
CTGAAGAAGAAGATCATGCTTGTGAACATTGTTCTGAAACTGATCTATCT
GCTTCTTCAATGTCAAAGAAAATAGATAATGGTGATGATGATTACGAACA
TaatgatgataatgatgatatgaagaaaatcgaaaatgaaTCTGAAGAAG
ACACTGAGTAAAGACAATctttatttttgtcttcttgAATTAGAGTCTTG
TTTCCACACTGGATGGAGATCTTAGACATCATCTCTACAGGGTTAACTAG
GGGTTAGAATGGGGTTATACTTTCAGGCTTACGTATAGGTTATTTCAAGA
AAACTGAAGGGAATCGTGTCAAATTATcttttaacaatgtttatcCAGAG
CTGTTTATAGTCAGCAAAATATGTTGCTATCAGTTAAAAACTGCTCTTTA
GAAAGCCCATATCAACAAGCCTACGGGGTTATATCCTTATGGGATTGTCC
AAATTTTAGCATatttatgtttaaaaaattcatttaaaaatgtaaataga
ATAATTTCGTATGAGTTCGTACATtccaaattaaattatttttgaaaatt
ttgatatcttgTAAAGtagttaaaattttgattattctggaaatcttgaa
atattttttgctgaatgCAACTATTGAATTGAAATTTCGTTTTGGTCCGg
tattttcaaacatttcttAAAAACGCAATAACGATAAATTAACTCGATTT
TGTATTTAACAGTTTTTGCACTCCTATCTCAAGTGGTTCAAGTTAGTTGG
GGGGAGTGTTTAATATAACAACCAgggcttgaaaatgaaggaTGGATGTC
AGATTCCATTTTTCTATTCGCCCATTTGACCCCTGCCTTAGTTATACCTt
gaggaaactttttttttctttgataaaNCGAGTTACGAAATGAGCGTGAT
ATGTTAcgagaaaatgttttcttttctggAGATGATGCCAGCGAATCTTC
AGATGCGTTAACTGAAGAAGAAGATCATGCTTGTGAACATTGTTCTGAAA
CTGATCTATCTGCTTCTTCAATGTCAAAGAAAATAGATAATGGTGATGAT
GATTACGAACATAATGACGATAATGATGATATGaagaaaatcgaaaatga
aTCTGAAGAAGACACTGAGTAAAGACAATctttatttttgtcttcttgAA
TTAGAGTCTTGTTTCCACACTGGATGGAGATCTTAGACATCATCTCTACA
GGGTTAACTAGGGGTTAGAATGGGGTTATACTTTCAGGCTTACGTATAGG
TTATTTCAAGAAAACTGAAGGGAATCGTGTCAAATTATCTCTTAACAATG
TTTATCCAGAGCTGTTTATAGTCAGCAAAATATGTTGCTATCAGTTAAAA
ACTGCTCTTTAGAAAGCCCATATCAACAAGCCTACGGGGTTATATCCTTA
TGGGATTGTCCAAATTTTAGCATatttatgtttaaaaaattcatcTGAAA
ATGTAAATAGAATAATTTCGTATGAGTTCGTACATtccaaattaaattat
ttttgaaaattttgatatcttgTAAAGtagttaaaattttgattattctg
gaaatcttgaaatattttttgctgaatgCAACTATTGAATTGAAATTTCG
TTTTGGTCCGgtattttcaaacatttcttAAAAACGCAATAACGATAAAT
TAACTCGATTTTGTATTTAACAGTTTTTGCACTCCTATCTCAAGTGGTTC
AAGTTAGTTGGGGGGAGTGTTTAATATAACAACCAgggcttgaaaatgaa
ggaTGGATGTCAGATTCCATTTTTCTATTCGCCCATTTGACCCCTGCCTT
AGTTATACCTTGAGGAAACTTTTTTTTTCTTTGATAAATTTAAATAGTTC
AGGATTCAGGATATTCCCACGATTTCTCC Run BLAST on NCBI protein sequence of TCONS_00014283-protein >TCONS_00014283-protein ID=TCONS_00014283-protein|Name=TCONS_00014283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MASITEEKLSPDVDRTFTKENHSMSPESVKDNIEIKSDAVLDEIAAKVDA
LDFNKKSDGEDDDDFITETETEVQTINRQSEIIKKQAETINTLIQQLRVM
FDEYNAACQEKEYYEDLSEALFRYIEICEGNIGIQEEVCTQSGEDENISN
LITKDQDETTTESGDGATDPKPTPDRVEKQAEPTTTDQDQPTESMAVDDS
ETTAPPPPPPKQRISNNELIRLNHILLKELIELRNERDMLRENVFFSGDD
ASESSDALTEEEDHACEHCSETDLSASSMSKKIDNGDDDYEHNDDNDDMK
KIENESEEDTE Run BLAST on NCBI transcript from alignment at sc0000185:178806..182676+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014283 ID=TCONS_00014283|Name=TCONS_00014283|organism=Clytia hemisphaerica|type=transcript|length=3871bp|location=Sequence derived from alignment at sc0000185:178806..182676+ (Clytia hemisphaerica)
tcgaattacaaaatgattcgaatgtttttgttcgatttcgattttgaaca
aaaaataaaatcaaaaaaccattttcagtTTCTGTTTTATTGGAAGGAGA
GAGTtattcatcaaattttgaaattatggcATCAATCACTGAAGAAAAAC
TGTCTCCAGATGTTGACAGAACTTTTACGAAAGAAAACCATTCAATGTCT
CCTGAATCGGTAAAGgacaatattgaaatcaaaaGTGATGCTGTTTTAGA
TGAAATTGCTGCCAAAGTTGATGCTTtggattttaacaaaaaaagcgACG
GagaagatgatgatgattttatAACCGAAACCGAGACTGAAGTTCAAACC
ATTAATAGACAATCAGAAATCATTAAGAAACAAGCTGAAACTATCAATAC
ATTGATTCAGCAATTGCGTGTCATGTTTGATGAATATAATGCTGCTTGCC
AAGAGAAAGAATATTATGAAGATTTGAGTGAAGCTTTATTTCGTTACATC
GAGATTTGTGAAGGTAATATCGGTATTCAAGAAGAAGTTTGTACTCAAAG
TGGAGAggatgaaaatatttcaaatctaaTCACCAAAGATCAAGATGAAA
CGACCACCGAAAGTGGTGATGGTGCTACGGATCCAAAACCGACCCCAGAT
CGAGTCGAAAAACAAGCCGAACCCACTACAACAGACCAAGACCAACCAAC
TGAATCTATGGCGGTTGATGATTCAGAAACAACCGCCCCACCACCACCTC
CACCCAAACAACGTATTTCTAACAAcgagttaatccgattaaatcACATC
CTATTGAAAGAATTGATCGAGTTACGGAATGAGCGTGATATGTTAcgaga
aaatgttttcttttctggAGATGATGCCAGCGAATCTTCAGATGCGTTAA
CTGAAGAAGAAGATCATGCTTGTGAACATTGTTCTGAAACTGATCTATCT
GCTTCTTCAATGTCAAAGAAAATAGATAATGGTGATGATGATTACGAACA
TaatgatgataatgatgatatgaagaaaatcgaaaatgaaTCTGAAGAAG
ACACTGAGTAAAGACAATctttatttttgtcttcttgAATTAGAGTCTTG
TTTCCACACTGGATGGAGATCTTAGACATCATCTCTACAGGGTTAACTAG
GGGTTAGAATGGGGTTATACTTTCAGGCTTACGTATAGGTTATTTCAAGA
AAACTGAAGGGAATCGTGTCAAATTATCTCTTAACAATGTTTATCCNCCA
GATGTTGACAGAACTTTTACGAAAGAAAACCATTCAATGTCTCCTGAATC
GGTAAAGgacaatattgaaatcaaaaGTGATGCTGTTTTGGATGAAATTG
CTGCCAAAGTTGATGCTttagattttaacaaaaaaagcgACGGagaagat
gatgatgattttattACCGAAACCGAGACTGAAGTTCAAACGATTAATAG
ACAATCAGAAATCATTAAGAAACAAGCTGAAACTATCAATACATTGATTC
AACAATTGCGTGTCATGTTTGATGAATATAATGCTGCTTGCCAAGAGAAA
GAATATTATGAAGATTTGAGTGAAGCTTTATTTCGTTACATCGAGATTTG
TGAAGGTAATATCGTTATTCAAGAAGAAGTTTGTACTCAAAGTGGAGatg
atgaaaatatttcaaatctaaTCACCAAAGATCAAGATGAAACGACCACC
GAAAGTGGTGATGGTGCTACGGCTCCAAAACCGACCCCAGATCGAGTCGA
AAAACAAGCCGAACCCACTACAACAGACCAAGACCAACCAACTGAATCTA
TGGCGGTTGATGATTCTGAAACAACCgccccaccaccaccaccacccaAA
CAACGTATTTCTAACAAcgagttaatccgattaaatcACATCCTATTGAA
AGAATTGATCGAGTTACGAAATGAGCGTGATATGTTAcgagaaaatgttt
tcttttctggAGATGATGCCAGCGAATCTTCAGATGCGTTAACTGAAGAA
GAAGATCATGCTTGTGAACATTGTTCTGAAACTGATCTATCTGCTTCTTC
AATGTCAAAGAAAATAGATAATGGTGATGATGATTACGAACATaatgatg
ataatgatgatatgaagaaaatcgaaaatgaaTCTGAAGAAGACACTGAG
TAAAGACAATctttatttttgtcttcttgAATTAGAGTCTTGTTTCCACA
CTGGATGGAGATCTTAGACATCATCTCTACAGGGTTAACTAGGGGTTAGA
ATGGGGTTATACTTTCAGGCTTACGTATAGGTTATTTCAAGAAAACTGAA
GGGAATCGTGTCAAATTATcttttaacaatgtttatcCAGAGCTGTTTAT
AGTCAGCAAAATATGTTGCTATCAGTTAAAAACTGCTCTTTAGAAAGCCC
ATATCAACAAGCCTACGGGGTTATATCCTTATGGGATTGTCCAAATTTTA
GCATatttatgtttaaaaaattcatttaaaaatgtaaatagaATAATTTC
GTATGAGTTCGTACATtccaaattaaattatttttgaaaattttgatatc
ttgTAAAGtagttaaaattttgattattctggaaatcttgaaatattttt
tgctgaatgCAACTATTGAATTGAAATTTCGTTTTGGTCCGgtattttca
aacatttcttAAAAACGCAATAACGATAAATTAACTCGATTTTGTATTTA
ACAGTTTTTGCACTCCTATCTCAAGTGGTTCAAGTTAGTTGGGGGGAGTG
TTTAATATAACAACCAgggcttgaaaatgaaggaTGGATGTCAGATTCCA
TTTTTCTATTCGCCCATTTGACCCCTGCCTTAGTTATACCTtgaggaaac
tttttttttctttgataaaNCGAGTTACGAAATGAGCGTGATATGTTAcg
agaaaatgttttcttttctggAGATGATGCCAGCGAATCTTCAGATGCGT
TAACTGAAGAAGAAGATCATGCTTGTGAACATTGTTCTGAAACTGATCTA
TCTGCTTCTTCAATGTCAAAGAAAATAGATAATGGTGATGATGATTACGA
ACATAATGACGATAATGATGATATGaagaaaatcgaaaatgaaTCTGAAG
AAGACACTGAGTAAAGACAATctttatttttgtcttcttgAATTAGAGTC
TTGTTTCCACACTGGATGGAGATCTTAGACATCATCTCTACAGGGTTAAC
TAGGGGTTAGAATGGGGTTATACTTTCAGGCTTACGTATAGGTTATTTCA
AGAAAACTGAAGGGAATCGTGTCAAATTATCTCTTAACAATGTTTATCCA
GAGCTGTTTATAGTCAGCAAAATATGTTGCTATCAGTTAAAAACTGCTCT
TTAGAAAGCCCATATCAACAAGCCTACGGGGTTATATCCTTATGGGATTG
TCCAAATTTTAGCATatttatgtttaaaaaattcatcTGAAAATGTAAAT
AGAATAATTTCGTATGAGTTCGTACATtccaaattaaattatttttgaaa
attttgatatcttgTAAAGtagttaaaattttgattattctggaaatctt
gaaatattttttgctgaatgCAACTATTGAATTGAAATTTCGTTTTGGTC
CGgtattttcaaacatttcttAAAAACGCAATAACGATAAATTAACTCGA
TTTTGTATTTAACAGTTTTTGCACTCCTATCTCAAGTGGTTCAAGTTAGT
TGGGGGGAGTGTTTAATATAACAACCAgggcttgaaaatgaaggaTGGAT
GTCAGATTCCATTTTTCTATTCGCCCATTTGACCCCTGCCTTAGTTATAC
CTTGAGGAAACTTTTTTTTTCTTTGATAAATTTAAATAGTTCAGGATTCA
GGATATTCCCACGATTTCTCC Coding sequence (CDS) from alignment at sc0000185:178806..182676+ >TCONS_00014283 ID=TCONS_00014283|Name=TCONS_00014283|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000185:178806..182676+ (Clytia hemisphaerica)
atggcATCAATCACTGAAGAAAAACTGTCTCCAGATGTTGACAGAACTTT
TACGAAAGAAAACCATTCAATGTCTCCTGAATCGGTAAAGgacaatattg
aaatcaaaaGTGATGCTGTTTTAGATGAAATTGCTGCCAAAGTTGATGCT
TtggattttaacaaaaaaagcgACGGagaagatgatgatgattttatAAC
CGAAACCGAGACTGAAGTTCAAACCATTAATAGACAATCAGAAATCATTA
AGAAACAAGCTGAAACTATCAATACATTGATTCAGCAATTGCGTGTCATG
TTTGATGAATATAATGCTGCTTGCCAAGAGAAAGAATATTATGAAGATTT
GAGTGAAGCTTTATTTCGTTACATCGAGATTTGTGAAGGTAATATCGGTA
TTCAAGAAGAAGTTTGTACTCAAAGTGGAGAggatgaaaatatttcaaat
ctaaTCACCAAAGATCAAGATGAAACGACCACCGAAAGTGGTGATGGTGC
TACGGATCCAAAACCGACCCCAGATCGAGTCGAAAAACAAGCCGAACCCA
CTACAACAGACCAAGACCAACCAACTGAATCTATGGCGGTTGATGATTCA
GAAACAACCGCCCCACCACCACCTCCACCCAAACAACGTATTTCTAACAA
cgagttaatccgattaaatcACATCCTATTGAAAGAATTGATCGAGTTAC
GAAATGAGCGTGATATGTTAcgagaaaatgttttcttttctggAGATGAT
GCCAGCGAATCTTCAGATGCGTTAACTGAAGAAGAAGATCATGCTTGTGA
ACATTGTTCTGAAACTGATCTATCTGCTTCTTCAATGTCAAAGAAAATAG
ATAATGGTGATGATGATTACGAACATaatgatgataatgatgatatgaag
aaaatcgaaaatgaaTCTGAAGAAGACACTGAGTAAatggcATCAATCAC
TGAAGAAAAACTGTCTCCAGATGTTGACAGAACTTTTACGAAAGAAAACC
ATTCAATGTCTCCTGAATCGGTAAAGgacaatattgaaatcaaaaGTGAT
GCTGTTTTAGATGAAATTGCTGCCAAAGTTGATGCTTtggattttaacaa
aaaaagcgACGGagaagatgatgatgattttatAACCGAAACCGAGACTG
AAGTTCAAACCATTAATAGACAATCAGAAATCATTAAGAAACAAGCTGAA
ACTATCAATACATTGATTCAGCAATTGCGTGTCATGTTTGATGAATATAA
TGCTGCTTGCCAAGAGAAAGAATATTATGAAGATTTGAGTGAAGCTTTAT
TTCGTTACATCGAGATTTGTGAAGGTAATATCGGTATTCAAGAAGAAGTT
TGTACTCAAAGTGGAGAggatgaaaatatttcaaatctaaTCACCAAAGA
TCAAGATGAAACGACCACCGAAAGTGGTGATGGTGCTACGGATCCAAAAC
CGACCCCAGATCGAGTCGAAAAACAAGCCGAACCCACTACAACAGACCAA
GACCAACCAACTGAATCTATGGCGGTTGATGATTCAGAAACAACCGCCCC
ACCACCACCTCCACCCAAACAACGTATTTCTAACAAcgagttaatccgat
taaatcACATCCTATTGAAAGAATTGATCGAGTTACGAAATGAGCGTGAT
ATGTTAcgagaaaatgttttcttttctggAGATGATGCCAGCGAATCTTC
AGATGCGTTAACTGAAGAAGAAGATCATGCTTGTGAACATTGTTCTGAAA
CTGATCTATCTGCTTCTTCAATGTCAAAGAAAATAGATAATGGTGATGAT
GATTACGAACATaatgatgataatgatgatatgaagaaaatcgaaaatga
aTCTGAAGAAGACACTGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014283-exon-sc0000185-1491911889:178806..179602 | TCONS_00014283-exon-sc0000185-1491911889:178806..179602 | Clytia hemisphaerica | exon |
| TCONS_00014283-exon-sc0000185-1510915933:178806..179602 | TCONS_00014283-exon-sc0000185-1510915933:178806..179602 | Clytia hemisphaerica | exon |
| TCONS_00014283-exon-sc0000185-1575043694:178806..179602 | TCONS_00014283-exon-sc0000185-1575043694:178806..179602 | Clytia hemisphaerica | exon |
| TCONS_00014283-exon-sc0000185-1491911889:180695..182676 | TCONS_00014283-exon-sc0000185-1491911889:180695..182676 | Clytia hemisphaerica | exon |
| TCONS_00014283-exon-sc0000185-1510915933:180695..182676 | TCONS_00014283-exon-sc0000185-1510915933:180695..182676 | Clytia hemisphaerica | exon |
| TCONS_00014283-exon-sc0000185-1575043694:180695..182676 | TCONS_00014283-exon-sc0000185-1575043694:180695..182676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000185 | supercontig | sc0000185:178806..182676 + |
Blast
The following BLAST results are available for this feature:
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