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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014297 ID=TCONS_00014297|Name=TCONS_00014297|organism=Clytia hemisphaerica|type=transcript|length=2000bp
ATTACATTGAAACTTATTTAGCTTTTTTGTCTATTTATTTCAGGGACGGC
TTGGGGGAAGCTTGCAAAGAAGTTCAATGTACCGAAAACGGTTCTACTTC
GACATAATGAGGCCAAGACAAAAGGCAAGCTGATTGGGAAAAGGGGTACG
AAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTTctgaaaa
aggtcaaaattggTTGGCTGGGTTGAAAGCACATTCAAAAGCATTGTTAT
GTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGAAGAATTC
AAACCGATGATGGGGATGAATACTGCATGGGGGTATGATAATCGTACAGC
AGGCTACCGTGTCAAAGTCATCAACGAAAAATCCACCCTCATTGAATTCT
TGGATGAAGAAGAGAGAGAACTACGAAACTGCATAATTGACATGGCTGAG
ATCGGATTCGCCCCAACGCTTACTGACATCAAAGACATCGTGTATAATTA
TGTAACAAGTACTGCACATGCGCGAGCTCTCAAATCATTCAAGTTCAAAG
GTGTTAAAGGTGACCCGGGACCAGATTGGCTTTCTGGCTTTATGTAGAGA
CAAGAGCTGAGCCTAAAAAATGCATCAAAGATGTCTAGGGCAAGAAGAAA
CGCAACTGAGAATCCTTTCATCATAAACAACTTTTATGATGTGCTTTCTC
AAACTATCACGCAGATGGGTCTCACCGAACGTCCAGATCTTATTTGGAAT
TGCGATGAAAGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAGCCAGGAA
AATGCAAAGTAGTTTCCTTGAAGGGGCAGAAAACATGCCAGATTGTAACC
GGCTCTGACAGGCAGAACACAACCGTCTTGGCTGCAGTATCCGCCTCTGG
AAAAGCACTCCCACCACTCATCCTTTTCAAGGGTCAGCAGGTGCAAACTA
CTTGGCGGCCTTCTAGACAAGATCGCGAGTACTTCCCCTGGATCTACGCG
AACAGCAGAGGTTGGATGACTGGAGACACGTTCCATAAATGGTTCATCCA
GTGGAAGAAGGTAACCAGAACCACCGACGAAGATGGTTTGGTCGAACCAC
GTCTAATGATCTACAACACGATCAAATTTTCGCGCAAGAATAAAATCACT
ATCCTAAAACTTCCACCTCATTCAACAGATTTATTGCAACCCTTAGACGT
ATCGGTTTTCAAGTCGTTGAAGGAGCACTGGGGACGAATCCTATTCTCAC
GTTTACGAATGACAAACGACCAACTATCTAAGCCAGAGTTTGCGTCAATC
TTGTCAAGTGATGAAGTCTGGGCAGCTTCACTCAGTATTGCATCGATCAA
AAATGGTTTTCGAAGGTGCGGTATTTCTCCAGTCGATTGCTCGCAGTATC
CAACCAACCGCTTCAACACACTCCTGAAAAATCGCTATGACACTTGGGTT
GCAGAAGGGAAAAACCACTATCGAGCGAAGAGCTTGACCGTCTGTTTGAA
CTTTCCCAGAGTAAGCCCCAAAGTGATAGACCAGTTCAGCCACAACCTAC
GAAGGTCGTTCTGGTCGAATTGTATCGTTTTTCATGCCTGATGAAAACCC
AGACGAGTTGGTCCCAATTTCCAGTTGCCTCACAACGCCGTCATCTGGAC
AAAATACACCATCGGGCAGCGTCCAACCATCGCCCGCTATGTTGTCGGGC
AGCGTCCAACCATCATCCGTTACGCCATCGGGCAGCGTCCAAGCATCGTC
CGTTACGCCATCGGGCAGCGTCTAACCATCGTCCGTTACGCCATCTGGCA
CCGTTCAACCATCGTCCACTACGCCATCGGGCAGTGTCCAACCATCGGGC
AGCGTCCAACCATCGTCCATTACGCCATCGGGCAGCGTCCAACTATCTTC
CGTTACGCCATCTGGCAGCGTTCAACCATCGTCCGCTACGCCATCGGGCA
GCGTCCAACCATCGTCCCCTACGCCAATTACAACAACATCAACAGAAAGC Run BLAST on NCBI protein sequence of TCONS_00014297-protein >TCONS_00014297-protein ID=TCONS_00014297-protein|Name=TCONS_00014297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MMCFLKLSRRWVSPNVQILFGIAMKVAYLVGFLPSEPGKCKVVSLKGQKT
CQIVTGSDRQNTTVLAAVSASGKALPPLILFKGQQVQTTWRPSRQDREYF
PWIYANSRGWMTGDTFHKWFIQWKKVTRTTDEDGLVEPRLMIYNTIKFSR
KNKITILKLPPHSTDLLQPLDVSVFKSLKEHWGRILFSRLRMTNDQLSKP
EFASILSSDEVWAASLSIASIKNGFRRCGISPVDCSQYPTNRFNTLLKNR
YDTWVAEGKNHYRAKSLTVCLNFPRVSPKVIDQFSHNLRRSFWSNCIVFH
A Run BLAST on NCBI transcript from alignment at sc0000185:29711..32176- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014297 ID=TCONS_00014297|Name=TCONS_00014297|organism=Clytia hemisphaerica|type=transcript|length=2466bp|location=Sequence derived from alignment at sc0000185:29711..32176- (Clytia hemisphaerica)
ATTACATTGAAACTTATTTAGCTTTTTTGTCTATTTATTTCAGGGACGGC
TTGGGGGAAGCTTGCAAAGAAGTTCAATGTACCGAAAACGGTTCTACTTC
GACATAATGAGGCCAAGACAAAAGGCAAGCTGATTGGGAAAAGGGGTACG
AAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTTCTGAAAA
AGGTCAAAATTGGTTGGCTGGGTTGAAAGCACATTCAAAAGCATTGTTAT
GTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGAAGAATTC
AAACCGATGATGGGGATGAATACTGCATGGGGGTATGATAATCGTACAGC
AGGCTACCGTGTCAAAGTCATCAACGAAAAATCCACCCTCATTGAATTCT
TGGATGAAGAAGAGAGAGAACTACGAAACTGCATAATTGACATGGCTGAG
ATCGGATTCGCCCCAACGCTTACTGACATCAAAGACATCGTGTATAATTA
TGTAACAAGTACTGCACATGCGCGAGCTCTCAAATCATTCAAGTTCAAAG
GTGTTAAAGGTGACCCGGGACCAGATTGGCTTTCTGGCTTTATGTAGAGA
CAAGAGCTGAGCCTAAAAAATGCATCAAAGATGTCTAGGGCAAGAAGAAA
CGCAACTGAGAATCCTTTCATCATAAACAACTTTTATGATGTGCTTTCTC
AAACTATCACGCAGATGGGTCTCACCGAACGTCCAGATCTTATTTGGAAT
TGCGATGAAAGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAGCCAGGAA
AATGCAAAGTAGTTTCCTTGAAGGGGCAGAAAACATGCCAGATTGTAACC
GGCTCTGACAGGCAGAACACAACCGTCTTGGCTGCAGTATCCGCCTCTGG
AAAAGCACTCCCACCACTCATCCTTTTCAAGGGTCAGCAGGTGCAAACTA
CTTGGCGGCCTTCTAGACAAGATCGCGAGTACTTCCCCTGGATCTACGCG
AACAGCAGAGGTTGGATGACTGGAGACACGTTCCATAAATGGTTCATCCA
GTGGAAGAAGGTAACCAGAACCACCGACGAAGATGGTTTGGTCGAACCAC
GTCTAATGATCTACAACACGATCAAATTTTCGCGCAAGAATAAAATCACT
ATCCTAAAACTTCCACCTCATTCAACAGATTTATTGCAACCCTTAGACGT
ATCGGTTTTCAAGTCGTTGAAGGAGCACTGGGGACGAATCCTATTCTCAC
GTTTACGAATGACAAACGACCAACTATCTAAGCCAGAGTTTGCGTCAATC
TTGTCAAGTGATGAAGTCTGGGCAGCTTCACTCAGTATTGCATCGATCAA
AAATGGTTTTCGAAGGTAACGNTGGGCAGCTTCACTCAGTATTGCATCGA
TCAAAAATGGTTTTCGACGGTAACATTTTGGTTTATAAACCGTTTGTAGG
AAATTTTATATACTTTCGAATTTATTTTTGCTTTTGGTTTCAACAGCTTC
TCACTATTCTTGATGTAATTGATATTTATGACGCAATCTTTTATACGGAA
ACAACCGAAAAGGTTCGGGTTTGGATTTTAACAAGTAAAACTGATGACAA
GTCCTAGTTAATTTTAAGTGGCTTCTTTTCTATGCATGAATAATACGAAG
AATCAATATAAGATCCCCTTGTTTCTTAGGTGCGGTATTTCTCCAGTCGA
TTGCTCGCAGTATCCAACCAACCGCTTCAACACACTCCTGAAAAATCGCT
ATGACACTTGGGTTGCAGAAGGGAAAAACCACTATCGAGCGAAGAGCTTG
ACCGTCTGTTTGAACTTTCCCAGAGTAAGCCCCAAAGTGATAGACCAGTT
CAGCCACAACCTACGAAGGTAAGTTTTTTTAATAGAGACATGAATTACAA
ATTCCTTTCGCTGTGGTTATTAATTTTATACTAAAAAACCTTATAAAGTT
ATCGCTAGATAATGTAAATCAATTGCATTCATTTTCAGGTCGTTCTGGTC
NCAATTGCATTTATTTTCAGGTCGTTCTGGTCGAATTGTATCGTTTTTCA
TGCCTGATGAAAACCCAGACGAGTTGGTCCCAATTTCCAGTTGCCTCACA
ACGCCGTCATCTGGACAAAATACACCATCGGGCAGCGTCCAACCATCGCC
CGCTATGTTGTCGGGCAGCGTCCAACCATCATCCGTTACGCCATCGGGCA
GCGTCCAAGCATCGTCCGTTACGCCATCGGGCAGCGTCTAACCATCGTCC
GTTACGCCATCTGGCACCGTTCAACCATCGTCCACTACGCCATCGGGCAG
TGTCCAACCATCGGGCAGCGTCCAACCATCGTCCATTACGCCATCGGGCA
GCGTCCAACTATCTTCCGTTACGCCATCTGGCAGCGTTCAACCATCGTCC
GCTACGCCATCGGGCAGCGTCCAACCATCGTCCCCTACGCCAATTACAAC
AACATCAACAGAAAGC Coding sequence (CDS) from alignment at sc0000185:29711..32176- >TCONS_00014297 ID=TCONS_00014297|Name=TCONS_00014297|organism=Clytia hemisphaerica|type=CDS|length=2718bp|location=Sequence derived from alignment at sc0000185:29711..32176- (Clytia hemisphaerica)
GTCGTTCTGGTCGAATTGTATCGTTTTTCATGCCTGAGTGCGGTATTTCT
CCAGTCGATTGCTCGCAGTATCCAACCAACCGCTTCAACACACTCCTGAA
AAATCGCTATGACACTTGGGTTGCAGAAGGGAAAAACCACTATCGAGCGA
AGAGCTTGACCGTCTGTTTGAACTTTCCCAGAGTAAGCCCCAAAGTGATA
GACCAGTTCAGCCACAACCTACGAAGATGATGTGCTTTCTCAAACTATCA
CGCAGATGGGTCTCACCGAACGTCCAGATCTTATTTGGAATTGCGATGAA
AGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAGCCAGGAAAATGCAAAG
TAGTTTCCTTGAAGGGGCAGAAAACATGCCAGATTGTAACCGGCTCTGAC
AGGCAGAACACAACCGTCTTGGCTGCAGTATCCGCCTCTGGAAAAGCACT
CCCACCACTCATCCTTTTCAAGGGTCAGCAGGTGCAAACTACTTGGCGGC
CTTCTAGACAAGATCGCGAGTACTTCCCCTGGATCTACGCGAACAGCAGA
GGTTGGATGACTGGAGACACGTTCCATAAATGGTTCATCCAGTGGAAGAA
GGTAACCAGAACCACCGACGAAGATGGTTTGGTCGAACCACGTCTAATGA
TCTACAACACGATCAAATTTTCGCGCAAGAATAAAATCACTATCCTAAAA
CTTCCACCTCATTCAACAGATTTATTGCAACCCTTAGACGTATCGGTTTT
CAAGTCGTTGAAGGAGCACTGGGGACGAATCCTATTCTCACGTTTACGAA
TGACAAACGACCAACTATCTAAGCCAGAGTTTGCGTCAATCTTGTCAAGT
GATGAAGTCTGGGCAGCTTCACTCAGTATTGCATCGATCAAAAATGGTTT
TCGAAGGTCGTTCTGGTCGAATTGTATCGTTTTTCATGCCTGAGTGCGGT
ATTTCTCCAGTCGATTGCTCGCAGTATCCAACCAACCGCTTCAACACACT
CCTGAAAAATCGCTATGACACTTGGGTTGCAGAAGGGAAAAACCACTATC
GAGCGAAGAGCTTGACCGTCTGTTTGAACTTTCCCAGAGTAAGCCCCAAA
GTGATAGACCAGTTCAGCCACAACCTACGAAGATGATGTGCTTTCTCAAA
CTATCACGCAGATGGGTCTCACCGAACGTCCAGATCTTATTTGGAATTGC
GATGAAAGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAGCCAGGAAAAT
GCAAAGTAGTTTCCTTGAAGGGGCAGAAAACATGCCAGATTGTAACCGGC
TCTGACAGGCAGAACACAACCGTCTTGGCTGCAGTATCCGCCTCTGGAAA
AGCACTCCCACCACTCATCCTTTTCAAGGGTCAGCAGGTGCAAACTACTT
GGCGGCCTTCTAGACAAGATCGCGAGTACTTCCCCTGGATCTACGCGAAC
AGCAGAGGTTGGATGACTGGAGACACGTTCCATAAATGGTTCATCCAGTG
GAAGAAGGTAACCAGAACCACCGACGAAGATGGTTTGGTCGAACCACGTC
TAATGATCTACAACACGATCAAATTTTCGCGCAAGAATAAAATCACTATC
CTAAAACTTCCACCTCATTCAACAGATTTATTGCAACCCTTAGACGTATC
GGTTTTCAAGTCGTTGAAGGAGCACTGGGGACGAATCCTATTCTCACGTT
TACGAATGACAAACGACCAACTATCTAAGCCAGAGTTTGCGTCAATCTTG
TCAAGTGATGAAGTCTGGGCAGCTTCACTCAGTATTGCATCGATCAAAAA
TGGTTTTCGAAGGTCGTTCTGGTCGAATTGTATCGTTTTTCATGCCTGAG
TGCGGTATTTCTCCAGTCGATTGCTCGCAGTATCCAACCAACCGCTTCAA
CACACTCCTGAAAAATCGCTATGACACTTGGGTTGCAGAAGGGAAAAACC
ACTATCGAGCGAAGAGCTTGACCGTCTGTTTGAACTTTCCCAGAGTAAGC
CCCAAAGTGATAGACCAGTTCAGCCACAACCTACGAAGATGATGTGCTTT
CTCAAACTATCACGCAGATGGGTCTCACCGAACGTCCAGATCTTATTTGG
AATTGCGATGAAAGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAGCCAG
GAAAATGCAAAGTAGTTTCCTTGAAGGGGCAGAAAACATGCCAGATTGTA
ACCGGCTCTGACAGGCAGAACACAACCGTCTTGGCTGCAGTATCCGCCTC
TGGAAAAGCACTCCCACCACTCATCCTTTTCAAGGGTCAGCAGGTGCAAA
CTACTTGGCGGCCTTCTAGACAAGATCGCGAGTACTTCCCCTGGATCTAC
GCGAACAGCAGAGGTTGGATGACTGGAGACACGTTCCATAAATGGTTCAT
CCAGTGGAAGAAGGTAACCAGAACCACCGACGAAGATGGTTTGGTCGAAC
CACGTCTAATGATCTACAACACGATCAAATTTTCGCGCAAGAATAAAATC
ACTATCCTAAAACTTCCACCTCATTCAACAGATTTATTGCAACCCTTAGA
CGTATCGGTTTTCAAGTCGTTGAAGGAGCACTGGGGACGAATCCTATTCT
CACGTTTACGAATGACAAACGACCAACTATCTAAGCCAGAGTTTGCGTCA
ATCTTGTCAAGTGATGAAGTCTGGGCAGCTTCACTCAGTATTGCATCGAT
CAAAAATGGTTTTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014297-exon-sc0000185-1575043694:30812..32176 | TCONS_00014297-exon-sc0000185-1575043694:30812..32176 | Clytia hemisphaerica | exon |
| TCONS_00014297-exon-sc0000185-1575043694:30309..30497 | TCONS_00014297-exon-sc0000185-1575043694:30309..30497 | Clytia hemisphaerica | exon |
| TCONS_00014297-exon-sc0000185-1575043694:29711..30156 | TCONS_00014297-exon-sc0000185-1575043694:29711..30156 | Clytia hemisphaerica | exon |
| TCONS_00014297-exon-sc0000185-1510915933:30812..32176 | TCONS_00014297-exon-sc0000185-1510915933:30812..32176 | Clytia hemisphaerica | exon |
| TCONS_00014297-exon-sc0000185-1510915933:30309..30497 | TCONS_00014297-exon-sc0000185-1510915933:30309..30497 | Clytia hemisphaerica | exon |
| TCONS_00014297-exon-sc0000185-1510915933:29711..30156 | TCONS_00014297-exon-sc0000185-1510915933:29711..30156 | Clytia hemisphaerica | exon |
| TCONS_00014297-exon-sc0000185-1491911889:30812..32176 | TCONS_00014297-exon-sc0000185-1491911889:30812..32176 | Clytia hemisphaerica | exon |
| TCONS_00014297-exon-sc0000185-1491911889:30309..30497 | TCONS_00014297-exon-sc0000185-1491911889:30309..30497 | Clytia hemisphaerica | exon |
| TCONS_00014297-exon-sc0000185-1491911889:29711..30156 | TCONS_00014297-exon-sc0000185-1491911889:29711..30156 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:29711..32176 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004875 | DDE_SF_endonuclease_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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