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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014300 ID=TCONS_00014300|Name=TCONS_00014300|organism=Clytia hemisphaerica|type=transcript|length=1951bpRun BLAST on NCBI protein sequence of TCONS_00014300-protein >TCONS_00014300-protein ID=TCONS_00014300-protein|Name=TCONS_00014300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp MKSIYVIFLILYLDLIAFTIILPLFPSIIEFYDNKDQTSTTKDGSLRQIHRun BLAST on NCBI transcript from alignment at sc0000185:178108..194039- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014300 ID=TCONS_00014300|Name=TCONS_00014300|organism=Clytia hemisphaerica|type=transcript|length=15932bp|location=Sequence derived from alignment at sc0000185:178108..194039- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000185:178108..194039- >TCONS_00014300 ID=TCONS_00014300|Name=TCONS_00014300|organism=Clytia hemisphaerica|type=CDS|length=14685bp|location=Sequence derived from alignment at sc0000185:178108..194039- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014300 vs. Swiss-Prot (Human)
Match: MFS10 (Major facilitator superfamily domain-containing protein 10 OS=Homo sapiens GN=MFSD10 PE=1 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 7.463e-75 Identity = 139/381 (36.48%), Postives = 221/381 (58.01%), Query Frame = 3
Query: 450 MEWFKTTLGMPDRRRYNNVLVGGILGSIFSLLQFICSPTIGFLSDVIGRKKVLVFSMLGTLTSYFIWWKSETFTLFLVSRIVGGLLKGSVTIATTMMSDVTNKENRGKGMAFIGLGFSLGFITGPMIGAYFVSKAKVDTLTHAFALPAQVAMMIQLI----ALLATVFLLDETIG-EKKEFNVKALISKIWSYTNPISLLWXXXXXXXX-------XXTLHQFTIINFIYLLIFSGLEFTLTFVTHERFNFTSMQQGKLFLFAGIIMMLVQGGYVRRMKHKNEKKIAIQGMLAMIPAMITIAFASTVRYTYIALALYSFGAGTVVPCLTALFSQHSENINSGENIGIFRSAGALARAIAPFVTCTLYWSLGSVSCYLIGAG 1556
++WF T +GMP +RYN+VL GG++GS FS+LQF+C+P G SD +GR+ V++ ++G TSY +W S +F FL SR++GG+ KG+V+++T +++D+ + R +GMA IG+ FSLGF GPM+GA +LP ++A L+ LL L ET+ EK+ ++ +P++LL + +L + ++ F+YL +FSGLE+TL+F+TH+RF F+S+QQGK+F G+ M +QG Y RR+ E + +L ++PA + I + ++ + L LYSF A VVPCL+++ + + G +G RS GALARA P V ++YW G+ +C+ +G
Sbjct: 68 VDWFATAIGMPVEKRYNSVLFGGLIGSAFSVLQFLCAPLTGATSDCLGRRPVMLLCLMGVATSYAVWATSRSFAAFLASRLIGGISKGNVSLSTAIVADLGSPLARSQGMAVIGVAFSLGFTLGPMLGA---------------SLPLEMAPWFALLFAASDLLFIFCFLPETLPLEKRAPSIALGFRDAADLLSPLALLRFSAVARGQDPPSGDRLSSLRRLGLVYFLYLFLFSGLEYTLSFLTHQRFQFSSLQQGKMFFLIGLTMATIQGAYARRIHPGGEVAAVKRALLLLVPAFLLIGWGRSLPVLGLGLLLYSFAAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGALARAAGPLVAASVYWLAGAQACFTTWSG 433 The following BLAST results are available for this feature:
BLAST of TCONS_00014300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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