|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014307 ID=TCONS_00014307|Name=TCONS_00014307|organism=Clytia hemisphaerica|type=transcript|length=1209bp
CAAATGAATCAAAGATGAAGCATTTTTGTAACGACATGCTCCGACGAAAC
GTCATTTCTGTCTTTATCAGTCAACTCCAAATATGACATTATTTACATTT
CAACATTGTTATTAATCGAGGCAGAACAAAACGGAAAATGTGACGTCAAt
aagtaaacaagggatagTGTTTACTTTTTGATTAGAGGGAGTGCCACAAA
AACCTAAAcacaaaaaatcatttaaatacGACTGAAGGTCTAACGTTTGG
TACAGAGCTCACAAAGCTAGAGAACAGTGAAGACAAGACATCACAAATCt
attctttactttttataaacaaatttcaaacaCACACAAAATGGCTGAAC
GTCAACAAGGATACGGTTTTACTGCTGAAGTTTCAGAAAAAATTGCTGGA
AAATACGACTCAAACCAAGAACGTGAAGCAGTTGCCTGGATCCGATCTCT
TGTCCCAGACTCCGGTCTCGACCAATCAGAATACGGTGCTGAAGCGCTTG
CTGAAAAACTTAACGATGGTACCATCTTATGTAAATTAGCCAACGCCCTT
GAATCAAGAGCTGTCCCAAAAATGAACACAAGTAAAATGGCATTcaagaa
aatggaaaatattAATTTCTTCCTCGAATTCTCATACCGTTTCGGATGCA
ACAAAACCGATATGTTCCAAACAGTTGATTTATATGAGGCAACGAACATG
GCTCAAGTTGTTAACGGCCTCCACGCTTTGGGACGCAAAGCCAACGCTAA
GGGAAAATCCGGTATTGGCCCCAAAGAGTCGAACAAGAACGAACGTAACT
TTTCTGAAGAACAAATTCGCCAAGGACGTGACGCACAAATCGGACTTCAA
GCTGGAACCAATAAATTCGCTAATCAATCTGGACAAAACTTTGGTAAAAC
GCGCGCCATCATTGATTAGAACGCATACTTAATTTATTCCTTATTTGAAT
ATGAACGCGCGACCGCACGCGTACGCCCTTCTAGacaattctttttgttt
tgtaatattttttgagttctttttGTTCTTTCATGTAAATAGATCaattt
tttaacagaaaaagagtaaataaaatttatttgtgaTGTTTTGATAAGTC
AACGTGAAATTGTCTACTTTATTGACTTTTCTCTGTGTACAAATGacaca
atttgaaaaaatataatgacTTTTGGCATCTGAGCAAGAAGACAATCTGT
TGATTGAAA Run BLAST on NCBI protein sequence of TCONS_00014307-protein >TCONS_00014307-protein ID=TCONS_00014307-protein|Name=TCONS_00014307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MAERQQGYGFTAEVSEKIAGKYDSNQEREAVAWIRSLVPDSGLDQSEYGA
EALAEKLNDGTILCKLANALESRAVPKMNTSKMAFKKMENINFFLEFSYR
FGCNKTDMFQTVDLYEATNMAQVVNGLHALGRKANAKGKSGIGPKESNKN
ERNFSEEQIRQGRDAQIGLQAGTNKFANQSGQNFGKTRAIID Run BLAST on NCBI transcript from alignment at sc0000185:248857..250731- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014307 ID=TCONS_00014307|Name=TCONS_00014307|organism=Clytia hemisphaerica|type=transcript|length=1875bp|location=Sequence derived from alignment at sc0000185:248857..250731- (Clytia hemisphaerica)
CAAATGAATCAAAGATGAAGCATTTTTGTAACGACATGCTCCGACGAAAC
GTCATTTCTGTCTTTATCAGTCAACTCCAAATATGACATTATTTACATTT
CAACATTGTTATTAATCGAGGCAGAACAAAACGGAAAATGTGACGTCAAT
AAGTAAACAAGGGATAGTGTTTACTTTTTGATTAGAGGGAGTGCCACAAA
AACCTAAACACAAAAAATCATTTAAATACGACTGAAGGTCTAACGTTTGG
TACAGAGCTCACAAAGCTAGAGAACAGTGAAGACAAGACATCACAAATCT
ATTCTTTACTTTTTATAAACAAATTTCAAACACACACAAAATGGCTGAAC
GTCAACAAGGATACGGTTTTACTGCTGAAGTTTCAGAAAAAATTGCTGGA
AAATACGACTCAAACCAAGGTAATTAGAATTAATTTGTTCAGTATTATTT
TTTTGTGAATTTTAACCGACCTTTGGTACAAGCCTTTGAAATAATAATGT
CAATGTCGATTTTGTAGCTTGAAAGTATAGTGTCTATTGAAGCAATATCT
GAAACAGTTTATTAATTCCTACTCCTATTGATACAGATATCGTATTTTTT
AAGGATTTAGATTCAAGCAGTGTCAATTTTCACTCTTGACTTACACGTCT
TTTTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATGCCT
AAAAACTAAGAAACATCTAAGAAACATGCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCTGATTTCTTAAGA
AACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAAAAAAACGTGTA
ATTTTATAATTTTTATTTCAATCTTATTTTTTCAGAACGTGAAGCAGTTG
CCTGGATCCGATCTCTTGTCCCAGACTCCGGTCTCGACCAATCAGAATAC
GGTGCTGAAGCGCTTGCTGAAAAACTTAACGATGGTACCATCTTATGTAA
ATTAGCCAACGCCCTTGAATCAAGAGCTGTCCCAAAAATGAACACAAGTA
AAATGGCATTCAAGAAAATGGAAAATATTAATTTCTTCCTCGAATTCTCA
TACCGTTTCGGATGCAACAAAACCGATATGTTCCAAACAGTTGATTTATA
TGAGGCAACGAACATGGCTCAAGTTGTTAACGGCCTCCACGCTTTGGGAC
GCAAAGCCAACGCTAAGGGAAAATCCGGTATTGGCCCCAAAGAGTCGAAC
AAGAACGAACGTAACTTTTCTGAAGAACAAATTCGCCAAGGACGTGACGC
ACAAATCGGACTTCAAGCTGGAACCAATAAATTCGCTAATCAATCTGGAC
AAAACTTTGGTAAAACGCGCGCCATCATTGATTAGAACGCATACTTAATT
TATTCCTTATTTGAATATGAACGCGCGACCGCACGCGTACGCCCTTCTAG
ACAATTCTTTTTGTTTTGTAATATTTTTTGAGTTCTTTTTGTTCTTTCAT
GTAAATAGATCAATTTTTTAACAGAAAAAGAGTAAATAAAATTTATTTGT
GATGTTTTGATAAGTCAACGTGAAATTGTCTACTTTATTGACTTTTCTCT
GTGTACAAATGACACAATTTGAAAAAATATAATGACTTTTGGCATCTGAG
CAAGAAGACAATCTGTTGATTGAAA Coding sequence (CDS) from alignment at sc0000185:248857..250731- >TCONS_00014307 ID=TCONS_00014307|Name=TCONS_00014307|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at sc0000185:248857..250731- (Clytia hemisphaerica)
AACGTGAAGCAGTTGCCTGGATCCGATCTCTTGTCCCAGACTCCGGTCTC
GACCAATCAGAATACGGTGCTGAAGCGCTTGCTGAAAAACTTAACGATGG
TACCATCTTATGTAAATTAGCCAACGCCCTTGAATCAAGAGCTGTCCCAA
AAATGAACACAAGTAAAATGGCATTCAAGAAAATGGAAAATATTAATTTC
TTCCTCGAATTCTCATACCGTTTCGGATGCAACAAAACCGATATGTTCCA
AACAGTTGATTTATATGAGGCAACGAACATGGCTCAAGTTGTTAACGGCC
TCCACGCTTTGGGACGCAAAGCCAACGCTAAGGGAAAATCCGGTATTGGC
CCCAAAGAGTCGAACAAGAACGAACGTAACTTTTCTGAAGAACAAATTCG
CCAAGGACGTGACGCACAAATCGGACTTCAAGCTGGAACCAATAAATTCG
CTAATCAATCTGGACAAAACTTTGGTAAAACGCGCGCCATCATTGATTAG
ATGGCTGAACGTCAACAAGGATACGGTTTTACTGCTGAAGTTTCAGAAAA
AATTGCTGGAAAATACGACTCAAACCAAGAACGTGAAGCAGTTGCCTGGA
TCCGATCTCTTGTCCCAGACTCCGGTCTCGACCAATCAGAATACGGTGCT
GAAGCGCTTGCTGAAAAACTTAACGATGGTACCATCTTATGTAAATTAGC
CAACGCCCTTGAATCAAGAGCTGTCCCAAAAATGAACACAAGTAAAATGG
CATTCAAGAAAATGGAAAATATTAATTTCTTCCTCGAATTCTCATACCGT
TTCGGATGCAACAAAACCGATATGTTCCAAACAGTTGATTTATATGAGGC
AACGAACATGGCTCAAGTTGTTAACGGCCTCCACGCTTTGGGACGCAAAG
CCAACGCTAAGGGAAAATCCGGTATTGGCCCCAAAGAGTCGAACAAGAAC
GAACGTAACTTTTCTGAAGAACAAATTCGCCAAGGACGTGACGCACAAAT
CGGACTTCAAGCTGGAACCAATAAATTCGCTAATCAATCTGGACAAAACT
TTGGTAAAACGCGCGCCATCATTGATTAGATGGCTGAACGTCAACAAGGA
TACGGTTTTACTGCTGAAGTTTCAGAAAAAATTGCTGGAAAATACGACTC
AAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014307-exon-sc0000185-1575043694:250313..250731 | TCONS_00014307-exon-sc0000185-1575043694:250313..250731 | Clytia hemisphaerica | exon |
| TCONS_00014307-exon-sc0000185-1575043694:248857..249646 | TCONS_00014307-exon-sc0000185-1575043694:248857..249646 | Clytia hemisphaerica | exon |
| TCONS_00014307-exon-sc0000185-1510915933:250313..250731 | TCONS_00014307-exon-sc0000185-1510915933:250313..250731 | Clytia hemisphaerica | exon |
| TCONS_00014307-exon-sc0000185-1510915933:248857..249646 | TCONS_00014307-exon-sc0000185-1510915933:248857..249646 | Clytia hemisphaerica | exon |
| TCONS_00014307-exon-sc0000185-1491911889:250313..250731 | TCONS_00014307-exon-sc0000185-1491911889:250313..250731 | Clytia hemisphaerica | exon |
| TCONS_00014307-exon-sc0000185-1491911889:248857..249646 | TCONS_00014307-exon-sc0000185-1491911889:248857..249646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:248857..250731 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00014307 vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.822e-38 Identity = 85/201 (42.29%), Postives = 118/201 (58.71%), Query Frame = 2
Query: 341 MAERQQGYGFTAEVSEKIAGKYDSNQEREAVAWIRSLVPDSGLDQSEYGAEALAEKLNDGTILCKLANALES---RAVPKMNTSKMAFKKMENINFFLEFSYRFGCNKTDMFQTVDLYEATNMAQVVNGLHALGRKANAK------GKSGIGPKESNKNERNFSEEQIRQGRDAQIGLQAGTNKFANQSGQN-FGKTRAII 913
MA R YG + EV EKI KYD++ E + V WI L ++ G + L DGT+LCKL N+L +PK++ SKMAFK+ME I+ FL+ + +G TD+FQTVDL+E +MA V L ALG A K G+ +++ +N R FSEEQ+RQG++ IGLQ G+NK A+Q+G +G R I+
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWI-ILQCAEDIEHPPPGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNV-IGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
|
