TCONS_00014340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014340
Unique NameTCONS_00014340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1032

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014340 ID=TCONS_00014340|Name=TCONS_00014340|organism=Clytia hemisphaerica|type=transcript|length=1032bp
CTATTTTTAATTTATCTTGGTCCTGCTGTTTTAAAGAACATGGTTTCAAG
CAAGCTCTATCGTCATTTTCTATCATTACATGTCGCATTAACACTTCTTT
TACACGAGCATATTGAACTAAACCCTGAACTGGTGAGATATGCTAAAAGT
CTGTTGAAGTGGTTCACCAAAACTGCTTATGGCCCCTTATTCAACGTCTA
CAATGTTCATTCAATAGTTCATTGCTGATGATGTGTTGAAACATCAGTGT
TCACTAAATGAAATTTCATCGTTTCAATTTGAGAACTATttgcaaacttt
gaaaaaaatgattcgTAATGGAAGCAATCCTATTGTACAAGTGGTTGGAG
AAATTCAGCTAAGCAGTTCTCTTCGCTCCGATAAACCAAATAAGTGCTTC
AAAGTTAATGGCaaggacaattttttttgtcCATTGATGGTTTGCGAaat
caaaaaggaaaatgaaaatggctACGAGTGCCAAGTCATAAAGCAAAACC
AATTTGAGCCATTCTACACTTTCCCAATAGAGTCTTCAGTACTAGATATC
TTTTACCTAAGAAATCCTGTCATTGCTCGCAAGAAAAACAAGCTTCTTAT
GGCATCCactatcaaaaagaaaatgtttagactttcatacaaaaatggTT
ATGTCTTTTTTCCTCTATTGTACGACATTGAAAGTAATATGTATTAACGA
AAacttatttattttcaaataatataattattattaatgtttatttttgt
tttaaattctaATTTATTAGTCGAGCAATATATCTACTATTTGTTTGTGA
TAAGTGATTGAAAATGTGTGGTAAAACATACTGCTTTTGGATATAAGAAA
TCAGAGtaatttgagaatattttttagtCTTAGGGATAAGTTTCcacgaa
atttgaattttccaaAACTTAATCTCAGAAGAAAAAGGCTTGTACGAATT
TCAAAATATAGAGTCGCAAAGTTTATAACAGCTAACGAAATACTAAATGC
TAGCTTAATTATTTAGGATTTAGAAAAGGGAG
Run BLAST on NCBI

protein sequence of TCONS_00014340-protein

>TCONS_00014340-protein ID=TCONS_00014340-protein|Name=TCONS_00014340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MIRNGSNPIVQVVGEIQLSSSLRSDKPNKCFKVNGKDNFFCPLMVCEIKK
ENENGYECQVIKQNQFEPFYTFPIESSVLDIFYLRNPVIARKKNKLLMAS
TIKKKMFRLSYKNGYVFFPLLYDIESNMY
Run BLAST on NCBI

transcript from alignment at sc0000185:92644..93675

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014340 ID=TCONS_00014340|Name=TCONS_00014340|organism=Clytia hemisphaerica|type=transcript|length=1032bp|location=Sequence derived from alignment at sc0000185:92644..93675 (Clytia hemisphaerica)
CTCCCTTTTCTAAATCCTAAATAATTAAGCTAGCATTTAGTATTTCGTTA
GCTGTTATAAACTTTGCGACTCTATATTTTGAAATTCGTACAAGCCTTTT
TCTTCTGAGATTAAGTTttggaaaattcaaatttcgtgGAAACTTATCCC
TAAGactaaaaaatattctcaaattaCTCTGATTTCTTATATCCAAAAGC
AGTATGTTTTACCACACATTTTCAATCACTTATCACAAACAAATAGTAGA
TATATTGCTCGACTAATAAATtagaatttaaaacaaaaataaacattaat
aataattatattatttgaaaataaataagtTTTCGTTAATACATATTACT
TTCAATGTCGTACAATAGAGGAAAAAAGACATAAccatttttgtatgaaa
gtctaaacattttctttttgatagtGGATGCCATAAGAAGCTTGTTTTTC
TTGCGAGCAATGACAGGATTTCTTAGGTAAAAGATATCTAGTACTGAAGA
CTCTATTGGGAAAGTGTAGAATGGCTCAAATTGGTTTTGCTTTATGACTT
GGCACTCGTagccattttcattttcctttttgattTCGCAAACCATCAAT
GgacaaaaaaaattgtccttGCCATTAACTTTGAAGCACTTATTTGGTTT
ATCGGAGCGAAGAGAACTGCTTAGCTGAATTTCTCCAACCACTTGTACAA
TAGGATTGCTTCCATTAcgaatcatttttttcaaagtttgcaaATAGTTC
TCAAATTGAAACGATGAAATTTCATTTAGTGAACACTGATGTTTCAACAC
ATCATCAGCAATGAACTATTGAATGAACATTGTAGACGTTGAATAAGGGG
CCATAAGCAGTTTTGGTGAACCACTTCAACAGACTTTTAGCATATCTCAC
CAGTTCAGGGTTTAGTTCAATATGCTCGTGTAAAAGAAGTGTTAATGCGA
CATGTAATGATAGAAAATGACGATAGAGCTTGCTTGAAACCATGTTCTTT
AAAACAGCAGGACCAAGATAAATTAAAAATAG

Coding sequence (CDS) from alignment at sc0000185:92644..93675

>TCONS_00014340 ID=TCONS_00014340|Name=TCONS_00014340|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0000185:92644..93675 (Clytia hemisphaerica)
TTAATACATATTACTTTCAATGTCGTACAATAGAGGAAAAAAGACATAAc
catttttgtatgaaagtctaaacattttctttttgatagtGGATGCCATA
AGAAGCTTGTTTTTCTTGCGAGCAATGACAGGATTTCTTAGGTAAAAGAT
ATCTAGTACTGAAGACTCTATTGGGAAAGTGTAGAATGGCTCAAATTGGT
TTTGCTTTATGACTTGGCACTCGTagccattttcattttcctttttgatt
TCGCAAACCATCAATGgacaaaaaaaattgtccttGCCATTAACTTTGAA
GCACTTATTTGGTTTATCGGAGCGAAGAGAACTGCTTAGCTGAATTTCTC
CAACCACTTGTACAATAGGATTGCTTCCATTAcgaatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008020XLOC_008020Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014340-proteinTCONS_00014340-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014340-exon-sc0000185-1491911889:92644..93675TCONS_00014340-exon-sc0000185-1491911889:92644..93675Clytia hemisphaericaexon
TCONS_00014340-exon-sc0000185-1510915933:92644..93675TCONS_00014340-exon-sc0000185-1510915933:92644..93675Clytia hemisphaericaexon
TCONS_00014340-exon-sc0000185-1575043694:92644..93675TCONS_00014340-exon-sc0000185-1575043694:92644..93675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:92644..93675 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.00954	9.29016	4.83208	2.29209	5.87147	3.67502	5.98557	7.4196	10.6072	10.529	14.8928	12.4025	10.0631	12.237	11.4068	12.8979	12.2971	14.3289	18.4215	17.9341	15.0462	14.6373	8.05653	9.61629	9.02518	9.41787	12.8858	9.77789	7.75111	7.75091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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