TCONS_00014341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014341
Unique NameTCONS_00014341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014341 ID=TCONS_00014341|Name=TCONS_00014341|organism=Clytia hemisphaerica|type=transcript|length=381bp
GAAAGCAATTATTTGTGATGATCCTGCTAGAGCATTTGTTGAATGCATTA
TTGGTCACACTGGCTATTCAGCCTGTGAGCGCTGTGTAGGTATTGGCGAA
AGAAAGCAAAATAGGACAGTGTACAATTCTAATAATAATGACTCACTTAA
GGAAGTGAACAAGTTCAACGAATTAAAGTTTCACCATCAAAATGATTTAT
CACCTTTAATCCCTATCGTTAATTGTATAGATGATTTTCCTCTTGATTAC
ATGCACATGGTTTTATTGGGACTTGTTAAAAGAgctttgatttttatgtt
gagAGGAGATGAAATATGCAAAATATCCCAACAGCAAGCCATTGAGATCA
CTAATCGATTAATCCTGTCACGTGAAAATAT
Run BLAST on NCBI

protein sequence of TCONS_00014341-protein

>TCONS_00014341-protein ID=TCONS_00014341-protein|Name=TCONS_00014341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
KAIICDDPARAFVECIIGHTGYSACERCVGIGERKQNRTVYNSNNNDSLK
EVNKFNELKFHHQNDLSPLIPIVNCIDDFPLDYMHMVLLGLVKRALIFML
RGDEICKISQQQAIEITNRLILSREN
Run BLAST on NCBI

transcript from alignment at sc0000185:93746..94126

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014341 ID=TCONS_00014341|Name=TCONS_00014341|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000185:93746..94126 (Clytia hemisphaerica)
ATATTTTCACGTGACAGGATTAATCGATTAGTGATCTCAATGGCTTGCTG
TTGGGATATTTTGCATATTTCATCTCCTctcaacataaaaatcaaagcTC
TTTTAACAAGTCCCAATAAAACCATGTGCATGTAATCAAGAGGAAAATCA
TCTATACAATTAACGATAGGGATTAAAGGTGATAAATCATTTTGATGGTG
AAACTTTAATTCGTTGAACTTGTTCACTTCCTTAAGTGAGTCATTATTAT
TAGAATTGTACACTGTCCTATTTTGCTTTCTTTCGCCAATACCTACACAG
CGCTCACAGGCTGAATAGCCAGTGTGACCAATAATGCATTCAACAAATGC
TCTAGCAGGATCATCACAAATAATTGCTTTC

Coding sequence (CDS) from alignment at sc0000185:93746..94126

>TCONS_00014341 ID=TCONS_00014341|Name=TCONS_00014341|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000185:93746..94126 (Clytia hemisphaerica)
ATTTTCACGTGACAGGATTAATCGATTAGTGATCTCAATGGCTTGCTGTT
GGGATATTTTGCATATTTCATCTCCTctcaacataaaaatcaaagcTCTT
TTAACAAGTCCCAATAAAACCATGTGCATGTAATCAAGAGGAAAATCATC
TATACAATTAACGATAGGGATTAAAGGTGATAAATCATTTTGATGGTGAA
ACTTTAATTCGTTGAACTTGTTCACTTCCTTAAGTGAGTCATTATTATTA
GAATTGTACACTGTCCTATTTTGCTTTCTTTCGCCAATACCTACACAGCG
CTCACAGGCTGAATAGCCAGTGTGACCAATAATGCATTCAACAAATGCTC
TAGCAGGATCATCACAAATAATTGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008021XLOC_008021Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014341-proteinTCONS_00014341-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014341-exon-sc0000185-1491911889:93746..94126TCONS_00014341-exon-sc0000185-1491911889:93746..94126Clytia hemisphaericaexon
TCONS_00014341-exon-sc0000185-1510915933:93746..94126TCONS_00014341-exon-sc0000185-1510915933:93746..94126Clytia hemisphaericaexon
TCONS_00014341-exon-sc0000185-1575043694:93746..94126TCONS_00014341-exon-sc0000185-1575043694:93746..94126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:93746..94126 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.42557	10.0571	4.20381	1.8279	7.78851	4.61594	10.0771	11.1719	6.08357	7.53549	12.9565	10.4403	6.85905	6.83826	10.1898	8.17002	7.43247	8.729	13.5944	10.325	10.3703	10.7975	7.80452	6.4504	4.42917	10.4753	9.61627	12.6775	6.4103	5.36481
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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