TCONS_00014350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014350
Unique NameTCONS_00014350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014350 ID=TCONS_00014350|Name=TCONS_00014350|organism=Clytia hemisphaerica|type=transcript|length=879bp
agagacAAAATCATGGGtttaaaataaaagtaataaagACTAATGCAGCA
TTTGTATTTTCACATAATATAATACTACATTATAATTTCTAGTATTTTTA
AATAAAGGATGCATGAAACCTGTTGAAGGTTAACCCTGCACACtgtcttt
tataaaaaccacaACCACAACGCTTTGGTTATTTCTCTTAATTTGTGATT
TATTTGGAACTTTTTATCCTTTAAATCATTTTAACAATTTGTATTTTTAA
GGTAAattcagaatattttaagatttgtCTCATTCTAATTAATAGCTCAG
CCTGTTTTTCTGAGAAGAAATAGAGTGTAAAAGGTCGAGAGGCTTTCACT
AAAGATCCCCTAGACAGCTGGTGTTTATACATACCTATAAAAGTATACCC
CATAACTCCACTGGTGAATAAGATTGATGCTGACTCGATTCACAATTAGT
ATAATtggtaaaacttcaaagaaattgaaggttttgattttaaataagag
tgatatcgttgcttacacatcaattttaattcacaagctttttcacatcg
GATTGACAcatatgtggagcaagattggtcagaaaatggaaaagaaaaac
attttttgcttatatcagcataatacaacaataggaagacactgtcctga
tatgaaatatgtgtctgatatgaaacgggaacacctatgtaaaaaaaaaa
acctttaagctGTCCCTTTGCGATCGAGACTTATCATTTTCCAGGCATCA
ATCTATACAGAAGTGCTAAATATAAAAAGGTTCTCTTAAAGTACAAAATT
GATTGAAcgtaaaaataataaaaatttagttagaaaagaaaataagaaat
catgtgacaagaaaaaaaaatatttaaaa
Run BLAST on NCBI

transcript from alignment at sc0000185:402547..403425

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014350 ID=TCONS_00014350|Name=TCONS_00014350|organism=Clytia hemisphaerica|type=transcript|length=879bp|location=Sequence derived from alignment at sc0000185:402547..403425 (Clytia hemisphaerica)
ttttaaatatttttttttcttgtcacatgatttcttattttcttttctaa
ctaaatttttattatttttacgTTCAATCAATTTTGTACTTTAAGAGAAC
CTTTTTATATTTAGCACTTCTGTATAGATTGATGCCTGGAAAATGATAAG
TCTCGATCGCAAAGGGACagcttaaaggtttttttttttacataggtgtt
cccgtttcatatcagacacatatttcatatcaggacagtgtcttcctatt
gttgtattatgctgatataagcaaaaaatgtttttcttttccattttctg
accaatcttgctccacatatgTGTCAATCcgatgtgaaaaagcttgtgaa
ttaaaattgatgtgtaagcaacgatatcactcttatttaaaatcaaaacc
ttcaatttctttgaagttttaccaATTATACTAATTGTGAATCGAGTCAG
CATCAATCTTATTCACCAGTGGAGTTATGGGGTATACTTTTATAGGTATG
TATAAACACCAGCTGTCTAGGGGATCTTTAGTGAAAGCCTCTCGACCTTT
TACACTCTATTTCTTCTCAGAAAAACAGGCTGAGCTATTAATTAGAATGA
GacaaatcttaaaatattctgaatTTACCTTAAAAATACAAATTGTTAAA
ATGATTTAAAGGATAAAAAGTTCCAAATAAATCACAAATTAAGAGAAATA
ACCAAAGCGTTGTGGTtgtggtttttataaaagacaGTGTGCAGGGTTAA
CCTTCAACAGGTTTCATGCATCCTTTATTTAAAAATACTAGAAATTATAA
TGTAGTATTATATTATGTGAAAATACAAATGCTGCATTAGTctttattac
ttttattttaaaCCCATGATTTTgtctct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008030XLOC_008030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014350-exon-sc0000185-1491911889:402547..403425TCONS_00014350-exon-sc0000185-1491911889:402547..403425Clytia hemisphaericaexon
TCONS_00014350-exon-sc0000185-1510915933:402547..403425TCONS_00014350-exon-sc0000185-1510915933:402547..403425Clytia hemisphaericaexon
TCONS_00014350-exon-sc0000185-1575043694:402547..403425TCONS_00014350-exon-sc0000185-1575043694:402547..403425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:402547..403425 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93512	1.64156	0.818067	1.49351	4.73807	3.17773	3.08128	5.01806	1.62681	1.90679	0.982541	1.70613	1.76066	1.61236	0.644965	1.08659	1.08156	1.1632	1.10449	1.19561	3.38862	3.0909	2.32619	2.84452	1.60286	1.65031	2.75868	3.20714	4.74016	4.41873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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