TCONS_00014383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014383
Unique NameTCONS_00014383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014383 ID=TCONS_00014383|Name=TCONS_00014383|organism=Clytia hemisphaerica|type=transcript|length=722bp
ATGAATTTGTGTGATGCTATGCGAAAATAACTGTAACAAAAGTATGACTT
TTTCTCTCATTTGTTGACAAAAATGAAATGATGTTGTCACAGAACCATAT
TTTAAAGAGACGAATGTTTAAAGATGGCGGATGAGCTGCCAGTTGATCAT
GAATTTGTTGATATTATTGTCTgttctaatttttgaaaaagCTACTGCAA
CCAATGAAACCGAGATCACGTGTCAAACATCATGCATACATGAATATGGT
GAAACGTGTCTGAATGACCAATCACGATGCCAATGTCGTGATGGCTTCTT
CAAAGGTCGAAAAGTATGTGAAGACTTGAACGAATGTGCTTCGCCATCAA
CTAACGATTGTCATGGCAACGCCAAATGTATCAATCTATTTGGAACATAT
CAATGCACATGTAAAAATGGTTTTCAGGGGAATGGAACCCACTGTGAAGA
TATCAACGAGTGTATTTCCGCCACTAATGAAACCAGATGTCACGAGCATG
CGCAATGCGTCAACACTAATGGATCATACACGTGTCAATGCTTAGATGGT
TACCATGGCAATGGGACTTATTGTGAACTTTTGGTTTGTAAAGAAGATAC
ATGCAATCCATTTCACGGTGAAAAATGCATCATTGAAGACAATCATCTCA
AGTGTACATGCGCAAAGGGATACTTCAAAGGACGGAAAGTTTGTGAAGAT
TTCAACGAATGTGCATCACCAT
Run BLAST on NCBI

transcript from alignment at sc0000187:306186..310063+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014383 ID=TCONS_00014383|Name=TCONS_00014383|organism=Clytia hemisphaerica|type=transcript|length=3878bp|location=Sequence derived from alignment at sc0000187:306186..310063+ (Clytia hemisphaerica)
ATGAATTTGTGTGATGCTATGCGAAAATAACTGTAACAAAAGTATGACTT
TTTCTCTCATTTGTTGACAAAAATGAAATGATGTTGTCACAGAACCATAT
TTTAAAGAGACGAATGTTTAAAGATGGCGGATGAGCTGCCAGTTGATCAT
GAATTTGTTGATATTATTGTCTgttctaatttttgaaaaaggtatgtact
tttctttctttcacaTTTAAACTAAACCTTCTTTAacagaaaaatgtttt
aattttcaccatattgtgagtatttttgtccattttcctaagaaaaaggg
tccataaagccttaaaatgttcttaactagcTCTTAATATTTCGGCCATA
GAAGTATTATCTTCTcataatacaatttttttataaaaacaaactatata
agaacataaggcttcgctgcccaaaatgttaagaacattttaaggcttta
tggactcaaaaacaccctatttcttgggaaaatggtaaaaaacattcaca
aaatggtcaaagtaagaacatgttacgaatgtttttaggcttaaaactca
aaaagttaaaggcttcaaaaattttggatgttcttataacaaaaatgtGT
ATACTTTTTAGCTATCCTTACATTAGCTACTGCAACCAATGAAACCGAGA
TCACGTGTCAAACATCATGCATACATGAATATGGTGAAACGTGTCTGAAT
GACCAATCACGATGCCAATGTCGTGATGGCTTCTTCAAAGGTCGAAAAGT
ATGTGAAGGTGTGTATTTAAATGCTTAAGGATCAGGTCCGGTTATCGTGG
TCGCTGGTTGGATTCTTTAACAGTTCTGTTCACTGTTAAAGAATCCAACC
AGCGACCACGATAACCGGACCTGATCCGATTTTAATGACGATATGGCGTA
TCAGCTCACTGAAATGCTTACTgataacccagctggcacacaacgttgtt
tcaacgctcatataacgttatatggacgttacgAACATTAGATAAatgtt
gaaacgacgttgtgtgccggctagGAAGGCCAAATGCAACGTGAAtaaaa
gcctgggatacacaggGACTAGTTTGCCGTTCTAAATCTAAGAAGTCACC
TCAAAATGCAGCGTCCCTaattattttcagaaaattgagcCTCCACAAAA
TCGAAGTCACTACATGTTTGTTAGGTTTGTAGATTTAATATGTCATGTTT
TATGACGATATATATGTAACGAAATGTTTTGACGCCATTGGATTCTTCGA
AGATCGAGCCCCGAGTCGAGCCCAATCCCCTAGGGGTGTTGGGGTAGAAT
TATGTGTATTGATATGTGGTTTTCCGAAAGATTGGATCTGAAAAGGGCTT
CATTTAGActatatttcaactttttgttcTGGAAAAACCCTGGTGTAGTA
AGCAATATATTCTCATTTTTTCACATCACCAACAGACTTGAACGAATGTG
CTTCGCCATCAACTAACGATTGTCATGGCAACGCCAAATGTATCAATCTA
TTTGGAACATATCAATGCACATGTAAAAATGGTTTTCAGGGGAATGGAAC
CCACTGTGAAGGTATTTCGTTCATCCACCTGATTTTGTGGGGCAAGCTTC
TTCCCATAATCATTATTAAGATTATACCTTGACTTGGAATGTGGACTTTT
GAGCCTcaatcaaattgttcttatcctgttcttatttatagggggAAATT
GAAGTATTTTAGGCTTTATATCCAACTTTAATACTTTGACCCctgaattg
cttgaaattgagtaattacaggctcagcattgttcttaaattgttctcat
cttttagcgattttgagctTCATTGAAAACCAAGCCTTCAGATGCTTTTT
AACTTCCTTAGTTTAAGGCtaaaactgttcttattttcaccattttgttt
gTAAAACTGAGAACTTAGTGGCGTTGGTACCGGAATTCTTCAGTTTAACT
TTTACCGAGACTTTTGATGAGGTGAGCAAAGAATTTGCGCAAGataatga
aattgtttttcctTCAATTTAGATATCAACGAGTGTATTTCCGCCACTAA
TGAAACCAGATGTCACGAGCATGCGCAATGCGTCAACACTAATGGATCAT
ACACGTGTCAATGCTTAGATGGTTACCATGGCAATGGGACTTATTGTGAA
CGTTAGACAAATTTCATTATTCTTTGTTTCTTCGAAAAGCTGATCTTGAA
CTTTATCATCACTTTTAACGTGTTTTCTAATAGATTTACATTTCGAGTGT
TATACTTTAGGACGGTCGTTTTTCGTACCCATATCAGGGAAATAAGTCGA
AACGGAGGAAAAAGTCGCGAGTTTAGCTTGAAAATAACTATGATAAGCGA
ACGTAGTGAGTGTAAGGCAAGTGCTAGCTACATTATCCTAGGCGACTATT
TTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNaaacaaacaaacaaacaaacaagtaTTTTT
CGATTACTAGTTTTGGTTTGTAAAGAAGATACATGCAATCCATTTCACGG
TGAAAAATGCATCATTGAAGACAATCATCTCAAGTGTACATGCGCAAAGG
GATACTTCAAAGGACGGAAAGTTTGTGAAGGTTtgacttgattttcttta
aaaacattcCAGAACTAGTAAGGTTTGGCTGACACTCGGCTGATTCTTAG
GATTAAAAAACGTTCTTGATATTGGTTATTTCAGGCTCTTAATTTGTCCT
TAAGTTTTAGTCAAAATTGAGCCTcttatttcaaaaacttttgtcgtgaa
agAGCCTGTTAAAGTATATTACACTTTACACATCGAAAATTGATTATAAT
AAGTAGCTAAATGATAAGTAGTCCTACAAAAATATTGAGTTTTTAAATCC
ACAGATTTCAACGAATGTGCATCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008053XLOC_008053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014383-exon-sc0000187-1491911889:306186..306376TCONS_00014383-exon-sc0000187-1491911889:306186..306376Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1510915933:306186..306376TCONS_00014383-exon-sc0000187-1510915933:306186..306376Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1575043694:306186..306376TCONS_00014383-exon-sc0000187-1575043694:306186..306376Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1491911889:306812..306943TCONS_00014383-exon-sc0000187-1491911889:306812..306943Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1510915933:306812..306943TCONS_00014383-exon-sc0000187-1510915933:306812..306943Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1575043694:306812..306943TCONS_00014383-exon-sc0000187-1575043694:306812..306943Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1491911889:307621..307746TCONS_00014383-exon-sc0000187-1491911889:307621..307746Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1510915933:307621..307746TCONS_00014383-exon-sc0000187-1510915933:307621..307746Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1575043694:307621..307746TCONS_00014383-exon-sc0000187-1575043694:307621..307746Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1491911889:308208..308336TCONS_00014383-exon-sc0000187-1491911889:308208..308336Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1510915933:308208..308336TCONS_00014383-exon-sc0000187-1510915933:308208..308336Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1575043694:308208..308336TCONS_00014383-exon-sc0000187-1575043694:308208..308336Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1491911889:309646..309765TCONS_00014383-exon-sc0000187-1491911889:309646..309765Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1510915933:309646..309765TCONS_00014383-exon-sc0000187-1510915933:309646..309765Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1575043694:309646..309765TCONS_00014383-exon-sc0000187-1575043694:309646..309765Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1491911889:310040..310063TCONS_00014383-exon-sc0000187-1491911889:310040..310063Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1510915933:310040..310063TCONS_00014383-exon-sc0000187-1510915933:310040..310063Clytia hemisphaericaexon
TCONS_00014383-exon-sc0000187-1575043694:310040..310063TCONS_00014383-exon-sc0000187-1575043694:310040..310063Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:306186..310063 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.020598	0	0.0952693	0.241483	0	0.00034713	0.126512	0	0	0	0	0.0395569	0.533206	0	0.710106	0.0231926	5.02539	0.00233175	5.35631	0	0	0.196224	0.0586591	0.76947	0.218224
Blast
[Close]
BLAST of TCONS_00014383 vs. Swiss-Prot (Human)
Match: UROM (Uromodulin OS=Homo sapiens GN=UMOD PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.149e-20
Identity = 53/137 (38.69%), Postives = 74/137 (54.01%), Query Frame = 2 
Query:  254 TCLNDQS--RCQCRDGFFKGRKVCEDLNECASPSTNDCHGNAKCINLFGTYQCTCKNGFQ-GNGTHCEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGYHGNGTYCELLVCKEDTCNPFHGEKCIIEDNHLKC 655
            TC  D++   C C++GF      C DL+ECA P  ++C  N+ C+N  G++ C C  GF+   G  C D++EC +    + CH  A CVN  GSY C C  GY G+G +CE   C   +C P  G  C+ E + L C
Sbjct:   40 TCTEDEAVTTCTCQEGFTGDGLTCVDLDECAIPGAHNCSANSSCVNTPGSFSCVCPEGFRLSPGLGCTDVDEC-AEPGLSHCHALATCVNVVGSYLCVCPAGYRGDGWHCE---CSPGSCGP--GLDCVPEGDALVC 170
The following BLAST results are available for this feature:
BLAST of TCONS_00014383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UROM2.149e-2038.69Uromodulin OS=Homo sapiens GN=UMOD PE=1 SV=1[more]
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