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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014385 ID=TCONS_00014385|Name=TCONS_00014385|organism=Clytia hemisphaerica|type=transcript|length=2536bpRun BLAST on NCBI transcript from alignment at sc0000187:306186..320096+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014385 ID=TCONS_00014385|Name=TCONS_00014385|organism=Clytia hemisphaerica|type=transcript|length=13911bp|location=Sequence derived from alignment at sc0000187:306186..320096+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014385 vs. Swiss-Prot (Human)
Match: FBN2 (Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=3) HSP 1 Score: 201.06 bits (510), Expect = 7.985e-53 Identity = 166/494 (33.60%), Postives = 244/494 (49.39%), Query Frame = 2
Query: 302 RDGFFKGRKVCEDLNECASPSTNDCHGNAKCINLFGTYQCTCKNGFQGNG--THCEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGYHGNGTYCELLVCKE-DTC--NPF--HGEKCIIEDNHLKCTCAKGY--FKGRKVCEDFNECASPLNNDCHDNAKCINLFGSYRCTCENGFQGNGTH--CEDINECRNAELQDCHTNAKCNNTIGAYQCTCLDGY--HGNGTYCINTNTCEYQRSKCSTNATCVDLSDSSSYECHCNQGFTG--DGSHCKDENECESKDNLCHLNATCYNTIGSYHCVCNNGF--QGDGISCQDKNECLTPFLNECPQDSSCGNTIGSFQCPCNAGFEQNNGLCIDLNECQTQKHKCDQNALCQNTHGSYRCQCFDGFYGDGKTCHDVDECHQNISDCHSQAHCTNTIGSYTCACAENFIGNGTFCRAKTCLD------RSCPKYSYCSDLTG---CHCNLGFLLNKTTSLCDQV 1705
R GR +D+NEC + +G KC N G+++C C +GF + +C DI+EC + + CVNT GS+ C+C +GY + + C + D C NP G C+ + +C C G+ R+ C D NEC+ L+++ N KC+N+ G+Y+C+C G+Q C DI+EC + + + +C N+ G+Y+C+C +GY +G C + + CE C C ++ Y C C GF D C D NEC+ N+C C NT GS+ C C G+ + C D +EC N C +SC N GSF+C C G+ N CIDL+EC H+C NA C NT GSYRC C +GF GDG TC DVDEC +NI+ C + C N G+Y C C F +++C D ++ + C++L G C C+ G+ L++T C +
Sbjct: 1061 RGDVLTGRPFYKDINECKAFPGMCTYG--KCRNTIGSFKCRCNSGFALDMEERNCTDIDECRISPDLCG---SGICVNTPGSFECECFEGYESG--FMMMKNCMDIDECERNPLLCRGGTCVNTEGSFQCDCPLGHELSPSREDCVDINECS--LSDNLCRNGKCVNMIGTYQCSCNPGYQATPDRQGCTDIDECM---IMNGGCDTQCTNSEGSYECSCSEGYALMPDGRSCADIDECENNPDICD-GGQCTNIP--GEYRCLCYDGFMASMDMKTCIDVNECDLNSNICMF-GECENTKGSFICHCQLGYSVKKGTTGCTDVDECEIGAHN-CDMHASCLNIPGSFKCSCREGWIGNGIKCIDLDECSNGTHQCSINAQCVNTPGSYRCACSEGFTGDGFTCSDVDECAENINLCEN-GQCLNVPGAYRCECEMGFTPASD---SRSCQDIDECSFQNICVFGTCNNLPGMFHCICDDGYELDRTGGNCTDI 1533 HSP 2 Score: 167.548 bits (423), Expect = 3.978e-42 Identity = 164/474 (34.60%), Postives = 216/474 (45.57%), Query Frame = 2
Query: 290 RCQCRDGF---FKGRKVCEDLNECASPSTNDCHGNAKCINLFGTYQCTCKNGFQ-GNGTHCEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGYHGNGTYCELLVCKE-DTCNP------FHGEKCIIEDNHLKCTCAKGYFKGR--KVCEDFNECASPLNNDCHDNAKCINLFGSYRCTCENGFQGN--GTHCEDINE--CRNAELQD-CHTNAKCNNTIGAYQCTCLDGYHGNG---TYCINTNTCEYQR---------------------SKCSTNATCVDLSDSSSYECHCNQGFTGD--GSHCKDENECESKDNLCHLNATCYNTIGSYHCVCNNGF--QGDGISCQDKNECLTPFLNECPQDSSCGNTIGSFQCPCNAGFEQNNGLCIDLNECQTQKHKCDQNALCQNTHGSYRCQCFDGFYGD--GKTCHDVDECHQNISDCHSQAHCTNTIGSYTCACAENFI 1567
RC+C G+ + G + C D +EC+ N C GN C N+ G+++C C GF+ G +CEDINEC A N C +C+NT GSY C C GY + +CK+ D C G C C C G + + C D NEC + +N +C+N+ GSYRC C GFQ + GT C D + C LQ C + N + +C C DG G G C T +Y++ TN C++ S+ C C G+T D G+ C D +EC C N C NT GSY C C G+ Q DG +C+D +EC T N C NT+G F C C GF Q++ CID NEC +Q C +CQNT GS+ C+C GF D G C DVDEC N Q C N +G Y C C + +I
Sbjct: 2195 RCECPMGYNLDYTGVR-CVDTDECSI--GNPC-GNGTCTNVIGSFECNCNEGFEPGPMMNCEDINEC--AQNPLLCA--FRCMNTFGSYECTCPIGY---ALREDQKMCKDLDECAEGLHDCESRGMMCKNLIGTFMCICPPGMARRPDGEGCVDENECRT--KPGICENGRCVNIIGSYRCECNEGFQSSSSGTECLDNRQGLCFAEVLQTICQMASSSRNLVTKSEC-CCDGGRGWGHQCELCPLPGTAQYKKICPHGPGYTTDGRDIDECKVMPNLCTNGQCINTM--GSFRCFCKVGYTTDISGTSCIDLDECSQSPKPC--NYICKNTEGSYQCSCPRGYVLQEDGKTCKDLDECQTKQHN---CQFLCVNTLGGFTCKCPPGFTQHHTACIDNNECGSQPSLCGAKGICQNTPGSFSCECQRGFSLDATGLNCEDVDECDGNH---RCQHGCQNILGGYRCGCPQGYI 2644 HSP 3 Score: 160.614 bits (405), Expect = 5.664e-40 Identity = 159/516 (30.81%), Postives = 238/516 (46.12%), Query Frame = 2
Query: 182 FEKAILTLATATNE---TEITCQTSCIHEYGETCLNDQSRCQCRDGFF--KGRKVCEDLNECASPSTNDCHGNAK-CINLFGTYQCTCKNGF--QGNGTHCEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGYHGNGTYCELLVCKED---------TCNPFHGEKCIIEDNHLKCTCAKGY------------FKGRKVC----------EDFNECASPLNNDCHDNAKCINLFGSYRCTCENGFQGN--GTHCEDINECRNAELQDCHTNAKCNNTIGAYQCTCLDGY--HGNGTYCINTNTCEYQRSKCSTNATCVDLSDSSSYECHCNQGFTGDGSHCKDENECESKDNLCHLNATCYNTIGSYHCVCNNGFQGD--GISCQDKNECLTPFLNECPQDSSCGNTIGSFQCPCNAGFEQNNGL--CIDLNECQTQKHKCDQNALCQNTHGSYRCQCFDGFYGD--GKTCHDVDECHQNISDCHSQAHCTNTIGSYTCACAENF--IGNG 1576
FE + NE + C C++ +G C C G+ + +K+C+DL+ECA +DC C NL GT+ C C G + +G C D NEC T C E+ +CVN GSY C+C +G+ + + E L ++ C + ++ + C +G+ + +K+C D +EC + N C N +CIN GS+RC C+ G+ + GT C D++EC + N C NT G+YQC+C GY +G C + + C+ ++ C CV+ + C C GFT + C D NEC S+ +LC C NT GS+ C C GF D G++C+D +EC + C N +G ++C C G+ Q+ C+D NEC + + C +A C NT GSY+C C GF D CHDV+EC + + C+ C+NT G Y C C + +G G
Sbjct: 2243 FEPGPMMNCEDINECAQNPLLCAFRCMNTFGSY------ECTCPIGYALREDQKMCKDLDECAE-GLHDCESRGMMCKNLIGTFMCICPPGMARRPDGEGCVDENEC--RTKPGIC-ENGRCVNIIGSYRCECNEGFQSSSSGTECLDNRQGLCFAEVLQTICQMASSSRNLVTKSECCCDGGRGWGHQCELCPLPGTAQYKKICPHGPGYTTDGRDIDECKV-MPNLCT-NGQCINTMGSFRCFCKVGYTTDISGTSCIDLDECSQSPKP---CNYICKNTEGSYQCSCPRGYVLQEDGKTCKDLDECQTKQHNCQ--FLCVNTL--GGFTCKCPPGFTQHHTACIDNNECGSQPSLCGAKGICQNTPGSFSCECQRGFSLDATGLNCEDVDECDGNHRCQ----HGCQNILGGYRCGCPQGYIQHYQWNQCVDENEC-SNPNACG-SASCYNTLGSYKCACPSGFSFDQFSSACHDVNECSSSKNPCN--YGCSNTEGGYLCGCPPGYYRVGQG 2731 HSP 4 Score: 142.124 bits (357), Expect = 3.188e-34 Identity = 147/443 (33.18%), Postives = 197/443 (44.47%), Query Frame = 2
Query: 383 NAKCINLFGTYQCTCKNGFQGNGTH--CEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGYH--GNGTYCELLVCKEDTCNPFHGEKCIIEDNHLKCTCAKGY--FKGRKVCEDFNECASPLNNDCHDNAKCINLFGSYRCTCENGFQ-GNGTHCEDINECRNAELQDCHTNAKCNNTIGAYQCTCLDGYH--GNGTYCINTNTCEYQRSKCSTNATCVDLSDSSSYECHCNQGFTGDGSHCKDENECESKDNLCHLNATCYNTIGSYHCVCNNGF--QGDGISCQDKNE--CLTPFLNE-------------------------------CPQDSSCGNTIGSFQCPCNAGFEQNNGL---CIDLNECQTQKHKCDQNALCQNTHGSYRCQCFDGFYGD--GKTCHDVDECHQNISDCHSQAHCTNTIGSYTCACAENF 1564
N CIN G+++C C GF N CEDI+EC + N C +A C+N+ GSY C+C G+ NG + C E HG C+ +C C G+ + + +C D +EC + C N C N GSY C C GF+ + C DI+EC + Q C N +C N IG+++C C +GY +G CI+TN C CS TC +L S+ C C G+ +C D NEC+ N+C L +C NT G + C+C GF +G C D + C T F N CP+D +FQ C G L D+NEC C N C NT GS+RC+C G+ D G C D DEC +I + CTN IGS+ C C E F
Sbjct: 1821 NGVCINQIGSFRCECPTGFSYNDLLLVCEDIDECSNGDN--LCQRNADCINSPGSYRCECAAGFKLSPNGACVDRNECLEIPNVCSHG-LCVDLQGSYQCICHNGFKASQDQTMCMDVDECE---RHPC-GNGTCKNTVGSYNCLCYPGFELTHNNDCLDIDECSSFFGQVCR-NGRCFNEIGSFKCLCNEGYELTPDGKNCIDTNECVALPGSCSP-GTCQNLE--GSFRCICPPGYEVKSENCIDINECDEDPNIC-LFGSCTNTPGGFQCLCPPGFVLSDNGRRCFDTRQSFCFTNFENGKCSVPKAFNTTKAKCCCSKMPGEGWGDPCELCPKDDEV-----AFQDLCPYGHGTVPSLHDTREDVNECLESPGIC-SNGQCINTDGSFRCECPMGYNLDYTGVRCVDTDEC--SIGNPCGNGTCTNVIGSFECNCNEGF 2243 HSP 5 Score: 121.709 bits (304), Expect = 6.537e-28 Identity = 129/413 (31.23%), Postives = 194/413 (46.97%), Query Frame = 2
Query: 293 CQCRDGFF--KGRKVCEDLNECASPSTNDCHGNAKCINLFGTYQCTCKNGFQGNGTHCEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGYHGNGTYC-ELLVCKEDTCNPFHGEKCIIEDNHLKCTCAKGYFKG--RKVCEDFNECASPLNNDCHDNAKCINLFGSYRCTCENGFQGN--GTHCEDINECRNAELQDCHTNAKCNNTIGAYQCTCLDGYHGNGTYCINTNTCEYQRSKCSTNATCVDLSDSSSYECHCNQGFTGDGS-HCKDE-------------------NECESKDNLCHLNATCYNTIGSYHCVCNNGFQGDGISC--QDKNECLTPFLNECP---QDSSCGNTIGSFQCPCNAGF--EQNNGLCIDLNECQTQKHKCDQNALCQNTHGSYRCQC 1429
C C+ G+ KG C D++EC + N C +A C+N+ G+++C+C+ G+ GNG C D++EC + T++ C +AQCVNT GSY C C +G+ G+G C ++ C E+ N +C+ +C C G+ + C+D +EC+ N C C NL G + C C++G++ + G +C DI+EC A+ +C N C NT G Y+C C + N T V D+ C+ G GDGS C E N CE+ +N+T Y T+ C GF+ + I+ +D +EC E P Q +C NT GSFQC C G+ ++ +C D++EC C C NT G+Y C C
Sbjct: 1350 CHCQLGYSVKKGTTGCTDVDECEIGAHN-CDMHASCLNIPGSFKCSCREGWIGNGIKCIDLDECSNGTHQ--CSINAQCVNTPGSYRCACSEGFTGDGFTCSDVDECAENI-NLCENGQCLNVPGAYRCECEMGFTPASDSRSCQDIDECS--FQNICV-FGTCNNLPGMFHCICDDGYELDRTGGNCTDIDEC--ADPINC-VNGLCVNTPGRYECNCPPDFQ--------------------LNPTGVGCVDNRVGNCYLKFGPRGDGSLSCNTEIGVGVSRSSCCCSLGKAWGNPCETCP---PVNSTEYYTL----CPGGEGFRPNPITIILEDIDEC-----QELPGLCQGGNCINTFGSFQCECPQGYYLSEDTRICEDIDECFAHPGVCGP-GTCYNTLGNYTCIC 1719 HSP 6 Score: 119.013 bits (297), Expect = 4.329e-27 Identity = 127/421 (30.17%), Postives = 179/421 (42.52%), Query Frame = 2
Query: 329 VCEDLNECASPSTNDCHGNAKCINLFGTYQCTCKNGF--QGNGTHCEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGY-HGNGTYCELLVCKEDTCNPFHGEKCI--IEDNHLKCTCAKGYFKGRKVCEDFNECASPLNNDCHDNAKCINLFGSYRCTCENGFQGNGTHCEDINECRNAELQDCHTNAKCNNTIGAYQCTCLDGYHGNGTYCINTNTCEYQRSKCSTNATCVDLSDSSSYECHCNQGFTGDGSHCKDENECESKDNLCHLNATCYNTIGSYHCVCNNGFQ-GDGISCQDKNECLTPFLNECPQDSSCGNTIGSFQCPCNAGFE--QNNGLCIDLNECQTQKHKCDQNALCQNTHGSYRCQCFDGF-YGDGKTCHDVDECHQNISDCHSQAHCTNTIGSYTCACAENF 1564
+ ED++EC C G CIN FG++QC C G+ + CEDI+EC + C NT G+YTC C Y NG + + + K ++G C + N K C Y G+ + C +P D C N+ G F + DI+EC+ E+ N C N IG+++C C G+ N + C+D +EC + DNLC NA C N+ GSY C C GF+ +C D+NECL N C C + GS+QC C+ GF+ Q+ +C+D++EC ++H C N C+NT GSY C C+ GF C D+DEC C N IGS+ C C E +
Sbjct: 1647 ILEDIDECQE-LPGLCQG-GNCINTFGSFQCECPQGYYLSEDTRICEDIDECFAHPGVCG---PGTCYNTLGNYTCICPPEYMQVNGGHNCMDMRKSFCYRSYNGTTCENELPFNVTKRMCCCTYNVGKAWNKPCEPCPTPGTAD--FKTICGNIPGFT-------FDIHTGKAVDIDECK--EIPGICANGVCINQIGSFRCECPTGFSYNDLLLV-----------------------------------------CEDIDECSNGDNLCQRNADCINSPGSYRCECAAGFKLSPNGACVDRNECLE-IPNVC-SHGLCVDLQGSYQCICHNGFKASQDQTMCMDVDEC--ERHPCG-NGTCKNTVGSYNCLCYPGFELTHNNDCLDIDECSSFFGQVCRNGRCFNEIGSFKCLCNEGY 2005 HSP 7 Score: 114.775 bits (286), Expect = 8.769e-26 Identity = 165/548 (30.11%), Postives = 225/548 (41.06%), Query Frame = 2
Query: 191 AILTLATATNETEITCQTSCIHEYGETCLNDQ-------SRCQCRDGFFK-GRKVCEDLNECASPSTNDCHGNAKCINLFGTYQCTCKNGFQGNGTH--CEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGYH--GNGTYCELLVCKEDTC---NPFHGEKCIIEDNHLKCTCAKGYFKGR--KVCEDFNECASPLNNDCHDNAKCINLFGSYRCTCENGFQGNGTHCEDINECRNAELQD-CHTNAKCNNTIGAY-------QCTCLDGYHGNG---TYCINTNTCEYQRSKCSTNATCVDLSD-------------------SSSYECHCNQGFTGD--GSHCKDENECESKDNLCHLNATCYNTIGSYHCVCNNG--FQGDGISCQDKNECLT-PFLNECPQDSSCGNTIGSFQCPCNAG--FEQNNGLCID-------LN----ECQTQKHKCDQNALCQNTHGSY------RCQ----CFDGFYG-DGKTCHDVDECHQNISDCHSQAHCTNTIGSYTCACAENFIGNGTFCRAKTCLD 1606
I+T T N+T C+ + CLN + RC+C G+ + C D++EC S N C N C+N G+Y C C GFQ T C DI+ECI N C ++ +CVNT+GS+ C C G+ +G C D C N CI ED KC C G+ + C D +EC +P C N CIN GS+RC C G D C + ++ C+ K + + +C C + +G G C N+ E+ S VD D SY C+CN G+ D G +C D +EC LC N C NT GSY C C G F+ + +C+D NEC + P +N +C N +GSF C C+ G +CID LN C+ + + C T G+ RC+ C G G TC DV+EC C C N+ GS+ C C E +GT + CLD
Sbjct: 483 PIITGLTILNQTIDICK-----HHANLCLNGRCIPTVSSYRCECNMGYKQDANGDCIDVDECTS---NPCT-NGDCVNTPGSYYCKCHAGFQRTPTKQACIDIDECIQ--NGVLC-KNGRCVNTDGSFQCICNAGFELTTDGKNCV----DHDECTTTNMCLNGMCINEDGSFKCICKPGFVLAPNGRYCTDVDECQTP--GICM-NGHCINSEGSFRCDCPPGLAVG----MDGRVCVDTHMRSTCYGGIKKGVCVRPFPGAVTKSECCCANPDYGFGEPCQPCPAKNSAEFHGLCSSGVGITVDGRDINECALDPDICANGICENLRGSYRCNCNSGYEPDASGRNCIDIDECLVNRLLCD-NGLCRNTPGSYSCTCPPGYVFRTETETCEDINECESNPCVN-----GACRNNLGSFNCECSPGSKLSSTGLICIDSLKGTCWLNIQDSRCEVNINGATLKSECCATLGAAWGSPCERCELDTACPRGLARIKGVTCEDVNECEVFPGVC-PNGRCVNSKGSFHCECPEGLTLDGT---GRVCLD 997 HSP 8 Score: 102.834 bits (255), Expect = 4.183e-22 Identity = 153/554 (27.62%), Postives = 212/554 (38.27%), Query Frame = 2
Query: 290 RCQCRDGFFKGRKVCEDLNECASPSTNDCHGNAKCINLFGTYQCTCKNGF--QGNGTHCEDINECISATNETRCHEHAQCVNTNGSYTCQCLDGYHGNGTYCELLVCKEDTCNPFHGEKCIIEDNHLKCTCAKGYFKGRKV--CEDFNECASPLNNDCHDNAKCINLFGSYRCTCENGFQGN--GTHCED--INECRNAELQDCHTNAKCNNTIGAYQ-----CTCLDGYHGNG-TYCINTNTCEYQR-----SKCSTNATCVDLSDS-------------------SSYECHCNQGF--TGDGSHCKDENECESKDNLCHLNATCYNTIGSYHCVCNNGFQ--GDGISCQDKNECL-------TPFLNECPQDSS-----CGNTIG-SFQCPCNA-------------------GFEQNNGLCIDLNECQTQKHKCDQNALCQNTHGSYRCQCFDGF-YGD-GKTCHDVDECHQNISDCHSQAHCTNTIGSYTCACAENF--IGNGTFCRAKTCLD-RSCPKYSYCSDLTG---CHCNLGFLLNKTTSLCDQV 1705
RC C +GF C D++ECA + N C N +C+N+ G Y+C C+ GF + C+DI+EC S N +C TCN G C C GY R C D +ECA P+N N C+N G Y C C FQ N G C D + C + CN IG C L GN C N+ EY N + L D S++C C QG+ + D C+D +EC + +C TCYNT+G+Y C+C + G +C D + T NE P + + C +G ++ PC F+ + G +D++EC+ C N +C N GS+RC+C GF Y D C D+DEC + C A C N+ GSY C CA F NG CL+ + + C DL G C C+ GF ++ ++C V
Sbjct: 1433 RCACSEGFTGDGFTCSDVDECAE-NINLCE-NGQCLNVPGAYRCECEMGFTPASDSRSCQDIDEC-SFQN-----------------------------------ICVFGTCNNLPG--------MFHCICDDGYELDRTGGNCTDIDECADPIN---CVNGLCVNTPGRYECNCPPDFQLNPTGVGCVDNRVGNCYLKFGPRGDGSLSCNTEIGVGVSRSSCCCSLGKAWGNPCETCPPVNSTEYYTLCPGGEGFRPNPITIILEDIDECQELPGLCQGGNCINTFGSFQCECPQGYYLSEDTRICEDIDECFAHPGVCG-PGTCYNTLGNYTCICPPEYMQVNGGHNCMDMRKSFCYRSYNGTTCENELPFNVTKRMCCCTYNVGKAWNKPCEPCPTPGTADFKTICGNIPGFTFDIHTGKAVDIDECKEIPGIC-ANGVCINQIGSFRCECPTGFSYNDLLLVCEDIDECSNGDNLCQRNADCINSPGSYRCECAAGFKLSPNGACVDRNECLEIPNVCSHGLCVDLQGSYQCICHNGFKASQDQTMCMDV 1935 The following BLAST results are available for this feature:
BLAST of TCONS_00014385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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