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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014395 ID=TCONS_00014395|Name=TCONS_00014395|organism=Clytia hemisphaerica|type=transcript|length=166bp
TTAGACTAGAAAAAAATTACCAACAAAAATCACTATTGTCTCATCAGCGC
TATTTCAAGAAAGGCTGTCACATCAAAGTTTGAAAGTAGAAGGGAATCAA
TTGGCACAATGTAAAGAAGTGTGTATGGCGTGAAAACTGATCGAAACCAA
CGCATACCGAAAAGGA Run BLAST on NCBI transcript from alignment at sc0000187:391432..397468+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014395 ID=TCONS_00014395|Name=TCONS_00014395|organism=Clytia hemisphaerica|type=transcript|length=6037bp|location=Sequence derived from alignment at sc0000187:391432..397468+ (Clytia hemisphaerica)
TTAGACTAGAAAAAAATTACCAACAAAAATCACTATTGTCTCATCAGCGC
TATTTCAAGAAAGGCTGTCACATCAAAGTTTGAAAGTAGAAGGGAATCAA
TTGGCACAATGTAAAGAAGTGTGTATGGCGTGAAAACTGATCGAAACCAA
CGCAGTGAGTATTCAATGccttttattcttttaaatCCTTTCTATTGATC
CAATCACTATTATCCTTTCGAATGGTGCAATGGAACGGGGAGTCGCTACT
TAAATCTCAGaaataccttaagagaagaactTTAGATTAATAGGCCATTC
GCCAAAAGTAATtatcgccaaatttaaatttctttcacaCTAGTCTCTTT
TTCTCCTAAAAATGTTCAGCGAAAAAATGggtcattcgccaaatttaaaa
attttattaattcGCCAAACTAAATTCTGCCAAATTGCACTTAAATTTCT
TCCCGCTATGGTATTCTAAAGGTATTATGAGAATTGATTTTTCCAATGAT
ATGAAAGAATTTTACGATGTCTGAGAGTTCTGGCCCTCCTGTGGATTTGA
GTAATTTAATTCAATTTATGGGTACTTTAGTTCATAGGTTATGAAAATGA
ATTGGTTTTGAAATAATCATTATGCATACTTTACACTTacatcaaaaaat
atattaacgaGTTCTACTTATTACAAAATATATCGTAAAATAAATACCTT
TATTATAAATTGAACTAAATGAATATCAGCGGAGCAAGTCCAAGAAACTA
TTTGTGTTCATTGAATTTAACCTGGAAATTATTTAAGGTTATGTTTAACT
AAGGCAAAAAGTCATAGGCTTAATTTAAAATGATGAATGGCTGGATGAAA
TGATGGATGCTGTTTACAATCTTATGCATTCTTTTGTAGGAAGActtctt
ttttcataaaaacaaaacaaattgttGTCATTGCTACTTTTATGAAAGAC
CCATTTTTCAATCTGTTATAGAAAACCTGTCAAAATGGAGATTACAGATA
CTAATTCACAACTAAGTGAAGAACTTCTTGAACTATTAAAAATCAtaaca
ttcaaatttttagttcaAAGAGAAGAGGTATTAGAATACATTGGAATTGG
TAATGTCCTTACTTATGTAAGGCGCATATATTAATAAAGGATTTCAGCAT
TCTTATTTTCAAGTATATGATAATTGAAAGTGTCCATGATGCTTGTATTA
TCAAACCACAAGATTGTTCATTGTATACCCACTTATCGCAATACTATTGC
ATTAAGGTGTTTAACATACACTCATGAATGAATTGTCATATAAACACAGT
AACATGTCATGAAAAACCACAAACAActttctctatttttttttcattaa
atagAGATTCAACGTAATACTGTATGTCTTCATGTTTAGACTCTATTGTT
CCCATTAATTTTCTATCTTTTCATTCTTACCTACTCTAAAAAACATTGAT
ATCAATTGTCCCTGTAGTGTTTATTACTATTTCACACTTTCTTATCAATT
GGAGGGTGGTTCATATTATGACGCCTCTCGCGCCCCTTTATGATCATCAG
CACTAAAGGGATCAAATATTAATACAGTCCATTTCAGTTGAATTGACACA
GACATTCTGGCAATTGCTTGGATCACCATGTATGCATACTCTCCTACAAT
CTTTGACAGGCCGATCAACACAATGAACAGCTTTCTTGACCACATTCTCC
AACTTATCGGTCAGTTCATCAGCTTGTGTATTCATTCCTAGATCTGTCCA
AAACTTTTGAGCAAACTGTCTTTGCTTCTGAGCTTCTTCTGGACTCAACA
CCTCCCTTTGGTCTCTGgatattttcttcttcttggtAACAAAAGACAAA
ACATCGTTTAGCATCTTGTTTTCATTATCTTCAGAAACGGAATCAATATT
CTTTTTGATTTGCTTCATCGAGTCGACATAATTCTTAACGACATCCAGAA
TTTTATCATCAACACCATCAAGATCCTTCGTGGTTGAAGCATCTGAATTT
AACGTATTTTTAAAgtctcttaaaatatttttagtagAATCATCTGTGGT
AACTGCCCTTTTATCTTGTTGTTTTGAGtcaatattttcaagtttattGT
CTTTAATAGCAGCATTGTTCAATTCTTTGGAATGTAAATCCCTTGGAATA
AGATCAGTAGGATCTATGGCAATTTCGTTCGGATGATAGGATATGGTGTG
GTTATCCTCGGTCAACTCTTGAATCAAATTATTAATCTCTAAATCGATAT
TATTCATGAAAGTTTTCGGTTTCTCTGTTGTCGTAGTTTGTGGGGATTCA
TGATTTGATTGCCCTTCAGAGTCTTGTGACTCTTGCTCGCGACCTGATAA
CGATTTCTTTTCTCTGATTTGTTTAACGAAAAACTCAAGTAGCTGGACTT
CATTTTGAGTTAAAGCGTGGTCTTTTGATAATTTGTCTTTGACACGTTGC
GCTAAAGCGGTTGATAATTTAATGATGAATTCGTCGAAAGATTGATTTTC
TTTGGCGTCAGTCTCCTTTGAAGACGGCTTCTTTATAGCAAATGTTTTTG
GAAGCTTTGGAGATTTACTTGTTTGAATAGctgtattttctttgttttcc
tcTACTGGGATAGTTTGTGGTAAGTCTGTTCCTTGATGTAACAAGCTCTC
TAAGTCAACATCGTCAGAAAGAATTTCCTTCTTTGATTTTCGTTTCTCTT
GTGGTTGATCACCAGATCCCTTCTGTAGGCGTGTCACAAAAAACCGTAAT
AATTTGACTTCAGTTTGCGATAAATCATGATGCTTATCCAACTTATCACG
AACGCGTTCAGCTAAGGCAGATGTCAGTCTTGTGAGAAATGTGTCAACTC
GGTTCGTCTCTTGCTCAATGTTATTATTGATGGTTGATTCCTGTCGGTTT
TTGATACTGGCAGCATCAACCAAGAAACAACATACCAGTACTGTATTAAC
CAGTAAATACCATCTTGCCATGACTTCTCCGTCCCTCAAAAGTGTTGTCC
TGTagtcaaaataactttttttgtatACAAACAGTCAagcaaaagaaaat
aatttgtcaaTGAATAAAATGCTCTTGTATCAACAAAAAGGAGTCAATGT
TGATTTAATACTAGAACAGGCTGACTATTTCTCCGTTTATTTAACCGAAC
TTTAAACATCATATCCCccttcttttcaataattcCAATTTGCATTGAGA
AAAATAcagtttttttgtttactctTCACAAAATAAAAGAATGCAACAGG
ACACAGTGGCCTGGTTTTCACATTAACATTCTGAAAATTCATCAATTAGA
TATGTAACATTCAAACAAGACAATGGATGATGACAAGTTAGGACAAttct
ttcttttccattttttacACTTGGTTTAGCGGATTATGAATTCCAAAGTT
AAGTGAAATGATATGTCATAACTCCCCCATATGTATAAGGTGGGACCTAG
GTTAAGCCCCTACACTTTAAAGTAcacatttctttataagaacaaactat
ataagaacatgaggcttcgatggccaaaatgtttagaacaagttaagaac
attttaaggcgtcaaggactctaaaacagccaatttcttaggaaaatagg
taaaaatggtcacagaATGGTGAatggcttaaaacccaaaaagttacgAA
CATCCGAATGCTTCCAAAAttttgggtgttcttataaaaaaaatcgtgtC
TTCACATAATGATATCTCATCCTAAtccaaaattctttaaaatgatatct
gatggaaattttgattttggtttaATCTTCCTTTTTCGATTCGGTCATAT
TTGTTCCGACTTATTGTCTTTCAAAAACGAGTTTCTAAATTTCTATTAAT
TTTCATCAGCAcaaaacttattcaattttaatgTTGATTTGTAAAAGGCA
cattttgagaaataaaattttgttgCAGTGTTCTAAATCATTGACGCGAT
GTTTTTATGAGAATTTCAAACCTTGACAGGTTGATTATTTGGTACATCCG
CATAATACAGTCTGGTATTTTGAAAAGATCACGAAAATGGAGGTTTCTTT
GAAATTCCTTCAATTAAAGCCCCTAAAACCATCCAGAATGGCCCAAAGTC
TTTCACATTAAGTCCAGTATAATTTGCATTATCCAACCTCAATGACAAAA
GCTTAGCCTTGAAACGTACTGGTATGGTTCATAGAATTTCGATGGCTAGA
TCTTGAGATGTTTGGGTTTACCCagcaaaaatattgttaaatGTGCCGAC
TTGGAAAAAAACCTTGATATGTGAGAATTTCAGTCAcatattatcttttt
ttttcaaggttaGGGGTTTTTAAGCTATTTCTACGAGACTACAATAGTAC
CGATACAATAAATATTAGACGATGTCTATTTAAGGAAAAAGTGTTTCAAG
AATGCTGTTGATGCTCATTAATAGATTGAGATTGACAACCGCAAATGAGT
TTTTGATTAATTGTTCGCAACTGTCAGCGGATAAGAGAAATCACAGACAC
CTTACAACCTCTTCGTTTCCTCTAAGGAGATTATATAAGCAGACTTAAGG
GGATATTTTTGCAATTCAAAACCTGTCAAAGATTCTAAAATAAGAATTAT
TTCTAATACCCTCCACAGTCGATCGATACCGAATCCGCCAAAtcttcttc
ctttaatgtaataCGGGGTATACCTTAGATTATATTGctctttaaataaa
aattcattttgtttttagacCCAATTGTTAGCTGTCCAACTCGTAAAAGA
ATTATGCAAAGTATCATTCTTCGTGAGTTAAACATGTGCTAATTTCATCC
TGGCGGTTttcccacagatatctgtaaagcccgaagggctagataggcaa
ctttaagctttctccagcaaaaaaaagtgaagcaaaaatttgacttttta
aatttcgtgccgatggataggatctagcattttaattgttttcgtagcgc
gagatcaaaaaaagtaggcggcaaacgctatttcacatctctcaaaccgg
tgaaattggatattttagtcacgtgactttggtaggaaatccttccaaac
ataggcttcacttttcgataaaagccgcaaatctagccctttgggcttta
cagatctgtgggttTTCCTACCTAAAACAAGGTGTGGTCTAGTTTAGTAG
ATCGGCTAGCGACTAATATCATCAATTTAAAACTCAATTAGTGTCAGTTA
CACAAGCAATttaattatattatatatttatttatGTGTCCATTCTTTAT
AGAAAACCACTTTGTTCTTCTTAAtctaaaacattttatttttggaaaat
ccttAGACATGCCTCCAGGTTCCTATATTTAGAAGCTAGTTGTATAATTT
GATACTCTCCAAGGTGCCTTACGAACAAAAAGCCAATATTTCAGTTCAAA
AGAATGGATGagtaatgaaaaataaagatcttcAGATTTCACGTGTTTAC
TCATCACtattaattcacaagctttttcacattggattgaaacggttgtg
gagcaagattggtcagaaaaaggaaaagaaaaacattttttgcttatatc
agcataatataacaataggcagacactgccctgatatgaaatatgtgtct
ttttaaaggttttcgTTGAATCTTTGGGGGAAGGGTTGAAATATGAAGGG
AACTAACTAATGCAGCAATACGTTTAATAATTGAAAATTCCTTGCAAGTG
TTAACATCTGCTCCTATACGTACTGTGTAGATAGATTTTATTTCCCTTCC
CCAGAGAGTATCCATCCTGTGTTCTAATTTAGCCAAATGTAGCTAAAAGG
CATATTGATAAGATACATAAGATCCAAAATCTATTTCGTTATTTTTGTGA
TCTGGTACCTCACTCATCTTGGTGTAGATATAATTCAGTCTAGAGTTTTT
AgctcttgaatttttttgactgctaaaatgatttttcgaaaaatatcatT
GCACTACATGAAGAATAGAAACCAGGTTCCATATTCTGATTtgtttttca
ttctatttttgaTTTACTTCTTCAGTACCGAAAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014395-exon-sc0000187-1491911889:391432..391585 | TCONS_00014395-exon-sc0000187-1491911889:391432..391585 | Clytia hemisphaerica | exon |
| TCONS_00014395-exon-sc0000187-1510915933:391432..391585 | TCONS_00014395-exon-sc0000187-1510915933:391432..391585 | Clytia hemisphaerica | exon |
| TCONS_00014395-exon-sc0000187-1575043694:391432..391585 | TCONS_00014395-exon-sc0000187-1575043694:391432..391585 | Clytia hemisphaerica | exon |
| TCONS_00014395-exon-sc0000187-1491911889:397457..397468 | TCONS_00014395-exon-sc0000187-1491911889:397457..397468 | Clytia hemisphaerica | exon |
| TCONS_00014395-exon-sc0000187-1510915933:397457..397468 | TCONS_00014395-exon-sc0000187-1510915933:397457..397468 | Clytia hemisphaerica | exon |
| TCONS_00014395-exon-sc0000187-1575043694:397457..397468 | TCONS_00014395-exon-sc0000187-1575043694:397457..397468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:391432..397468 + |
Blast
The following BLAST results are available for this feature:
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