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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014403 ID=TCONS_00014403|Name=TCONS_00014403|organism=Clytia hemisphaerica|type=transcript|length=1141bp
GTCTAAAGAAATCATTCATTGAAGAAACAGTTTTAATTATATTAGGTCGT
TGAAATTCTTTAAACATGGATGCTAAGCAAAcAATGGCCGACTTCAAGAA
CGACATTCTTAAAACACACAACACATACCGTAAAACACATCGATCCAACC
CTCTCAAATGGTCCAATAAGCTTCAAGCCAACGCCCAAAGATGGGCGGAT
AAACTAGCAAAGAAGGGATATCTCCAGCATGAAAACCAGTCAGATGAGGG
AGAAAATATCGCTTGTATGAAGGGAGCAGAGCTGACTGGTGAACGAGCTG
CAACCATGTGGTACGATGAAGTCAAATATTATGATTACAGTAAACCAACA
TTCAGCTCCAAGACAGGACATTTTACACAGCTTGTATGGAACGGATCAAC
TGAGCTTGGTGTAGGCCGCGCGACCGCTTCAAACGGTATGCAATTTGTCG
TCGCTCGATATAATCCACCCGGAAACATCCTTGGAAAATTCCCAGACAAC
GTCTTTTCATCAAACGGTAAACCGCCACCAACGACGTCAAgcaacaatag
caacaataacCGGACGACAAGAAACAAGCCTGAAAAACGGCAACAACAAC
CATCCAGTGATAAACAAAGTACGTATCTTGATGAAATATCTAAGGGGCtc
ataaaaatgaaagtcaAACCTACGGGTGGACTAGCTCCACAGAAGCCAAC
CAGTTCCACACCTAGAAATGGATTAGTGTTGCAACCACGGCAACCTGTTT
CCGTTTCACTACCGACGACTGGTTTGGTAGTTCACCAACAAAAAGCTACT
ACTTCCACTCCCGTACCAAAGGGTGGATTAATAGTTCATCAGTATACAAC
GACGACCGCTACTTCAGGCCCTAAAAGCAGCCTAATGGCTCATCAGCGCC
ACGAAGCTGGTCCTATTTCTGTCACCATTAAGACAGAACGTAGAGAGGAG
ATAAGCTTCTTTCGAAGAATTTCACACGGGGGATAGAATGCTTTTACATT
GTTTTTAATAGTTAGTTATTATATCCAATGCGTTTCAAAGCGaaggctag
aagcgaatcttcaatctttcccAATCAAGAAAAAGCGGAGCCAATCTAgt
actttattttgttttcgtttttaacatttttcaaaatttgc Run BLAST on NCBI transcript from alignment at sc0000187:439408..442531+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014403 ID=TCONS_00014403|Name=TCONS_00014403|organism=Clytia hemisphaerica|type=transcript|length=3124bp|location=Sequence derived from alignment at sc0000187:439408..442531+ (Clytia hemisphaerica)
GTCTAAAGAAATCATTCATTGAAGAAACAGTTTTAATTATATTAGGTCGT
TGAAATTCTTTAAACATGGATGCTAAGCAAAGTAAGTATTTGATTTTAGC
CGATTTGAAAAAAAGGAACCcgtttctttctgtttttttcAGGGTATGGT
ATATTGGTCTCATTTAGTATCTGTCCATTATCCGACGCACGAAACTATAG
AATTCTTTAGGATTTGGTCAACGATAGCTAGATTCAAACCATTCGTTCgt
tcaaaagaaaaaggctGCTGTTTAGGGATGTTTGAAATATGATGAAATCT
TTCGCTGTTGGAGCTCTCATAGATGGCTGTAAAGtttgtaaaaatgtaaa
aagaacATTCTAGAAAACTCCAAGCTTGCTGTTTCTACTTTGTATAGATT
ATTGATGACGTTTTTGAACAGATATTCAAGATCGTGCTATTTTGCGGGGT
CAAAGTAATTAGGATTTTTTTGCGGTACAAATTTTCCTGTTTCAGCAATA
AACCTACGCCTTAAATTCACAGAGACCTTTTTTATGTTACGCTTAAAAAG
TATTGACTCATATGTATTCAATATTAGCTtgtttttcaattaaaatttct
tttgatttctgTCTTGACTACCAAAACTAAAGTTTTGTCCAAAACCCGTT
TATCTTGGTTGGACATATTCTGTGTTGGTTGATATCCCGGAATAAAAGAT
TTGTTTTGATGGAAAGTTTCAAAGAATGCGGAAATTTTCATATTGAAgtc
aattttcttttcccaATCTAATTTCTACTGACTAATGTTTTTTTGATATA
cgtaatattttgaatattactTTCGACTGTACTAATTCACTCCAAACTTT
TATATGCATATCACAACTCATTGACGTGCagaattttttctttcctttct
acAATGCGTAGTATCCAGTAACATACTTCGAGCCTTTACGACTTAACAAT
AACCTTAGTATCGACCAATAGTATAAGTCCGGTGCTGGTTATTAATTCAA
TTTTGCACAGTATGGAACCCGTTACTTTTGAAAATCTCTGAATGACGCAT
TAGCCTGTACGTGCCTCTGGAAGAAAAAAGCTCAAAAGCTATTTTcctat
ttcaaatttcaaaatgacgTGTTATATGTAGGTGTATAAATCCTATAAAA
CCTCTAGAAAATCCTTAAGAAGGCCATAAAGTACCAAATATTTGATTAAG
ACATACAAGTGATTTTGAAAGGATTTTTGTTCAGGTAGGTTTATATTAGG
ATTACTAAGGACTTAAAATTGTGACAAGTAAAAGGGGTTTTTAAATATTG
CTGGGAAAATTCGAGATTTGAGTGGTATTGAGAGAAATAATGGAACGATA
TGATTGTTGGATAATTCCACGACTTGTATATCATTTTCGTTTGATCCTCT
ATATATCATtatcaagaaaaattgaagtGAAAGTACCTAGCCACGATAGA
ATTATTAGagtttttgaatatattttgcaTTGCATGGTGAAGAAAAATGC
AAATGTGTTTTGATCCGGAGATTATGAAATGACATAGGGAGCACCTTGcg
tttttgaatttgattttctttttggatCTAATCAATATTCTTCTTTGTTA
AcatattgacaatttttttttattgtagcAATGGCCGACTTCAAGAACGA
CATTCTTAAAACACACAACACATACCGTAAAACACATCGATCCAACCCTC
TCAAATGGTCCAATAAGCTTCAAGCCAACGCCCAAAGATGGGCGGATAAA
CTAGCAAAGAAGGGATATCTCCAGCATGAAAACCAGTCAGATGAGGGAGA
AAATATCGCTTGTATGAAGGGAGCAGAGCTGACTGGTGAACGAGCTGCAA
CCATGTGGTACGATGAAGTCAAATATTATGATTACAGTAAACCAACATTC
AGCTCCAAGACAGGACATTTTACACAGGTATGCAGATTTTCATTTCTCTA
ATTACAAGCACGACGTACCGGGTACGGCAGTCCGTCGGCCaccgtaccag
attttcacgaaaaatcCTAAAATTATCCTCTTCTGTCGGAAAAATCGCTT
AAACTCCTCATTCTCCGTACCAGATTTAAAAAGCTTCCGTTGTGCCTGCT
AATTATAATattcatgaaaatattttcataagcCATAAGAAAAGAGGACC
AAATGTCGCTTCCAGATATATTTTTACCCAAAATTATAATTTTGGCTTGT
ACTGTTTGTGTCACTTTTAAACCTTTTGGGGAGAAAGTTGACAGAGTCCA
AGTTTCTCTGAGTACGACATTGCTGTTAAAAATATACCTATCCTAGTTCC
TGAGATTTCTGACAGATCTTAAGCAGTGGAAATATTGTAATATTCTTTTT
CTGCTCTATCTAGCTTGTATGGAACGGATCAACTGAGCTTGGTGTAGGCC
GCGCGACCGCTTCAAACGGTATGCAATTTGTCGTCGCTCGATATAATCCA
CCCGGAAACATCCTTGGAAAATTCCCAGACAACGTCTTTTCATCAAACGG
TAAACCGCCACCAACGACGTCAAgcaacaatagcaacaataacCGGACGA
CAAGAAACAAGCCTGAAAAACGGCAACAACAACCATCCAGTGATAAACAA
AGTACGTATCTTGATGAAATATCTAAGGGGCtcataaaaatgaaagtcaA
ACCTACGGGTGGACTAGCTCCACAGAAGCCAACCAGTTCCACACCTAGAA
ATGGATTAGTGTTGCAACCACGGCAACCTGTTTCCGTTTCACTACCGACG
ACTGGTTTGGTAGTTCACCAACAAAAAGCTACTACTTCCACTCCCGTACC
AAAGGGTGGATTAATAGTTCATCAGTATACAACGACGACCGCTACTTCAG
GCCCTAAAAGCAGCCTAATGGCTCATCAGCGCCACGAAGCTGGTCCTATT
TCTGTCACCATTAAGACAGAACGTAGAGAGGAGATAAGCTTCTTTCGAAG
AATTTCACACGGGGGATAGAATGCTTTTACATTGTTTTTAATAGTTAGTT
ATTATATCCAATGCGTTTCAAAGCGaaggctagaagcgaatcttcaatct
ttcccAATCAAGAAAAAGCGGAGCCAATCTAgtactttattttgttttcg
tttttaacatttttcaaaatttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014403-exon-sc0000187-1491911889:439408..439488 | TCONS_00014403-exon-sc0000187-1491911889:439408..439488 | Clytia hemisphaerica | exon |
| TCONS_00014403-exon-sc0000187-1510915933:439408..439488 | TCONS_00014403-exon-sc0000187-1510915933:439408..439488 | Clytia hemisphaerica | exon |
| TCONS_00014403-exon-sc0000187-1575043694:439408..439488 | TCONS_00014403-exon-sc0000187-1575043694:439408..439488 | Clytia hemisphaerica | exon |
| TCONS_00014403-exon-sc0000187-1491911889:441036..441334 | TCONS_00014403-exon-sc0000187-1491911889:441036..441334 | Clytia hemisphaerica | exon |
| TCONS_00014403-exon-sc0000187-1510915933:441036..441334 | TCONS_00014403-exon-sc0000187-1510915933:441036..441334 | Clytia hemisphaerica | exon |
| TCONS_00014403-exon-sc0000187-1575043694:441036..441334 | TCONS_00014403-exon-sc0000187-1575043694:441036..441334 | Clytia hemisphaerica | exon |
| TCONS_00014403-exon-sc0000187-1491911889:441771..442531 | TCONS_00014403-exon-sc0000187-1491911889:441771..442531 | Clytia hemisphaerica | exon |
| TCONS_00014403-exon-sc0000187-1510915933:441771..442531 | TCONS_00014403-exon-sc0000187-1510915933:441771..442531 | Clytia hemisphaerica | exon |
| TCONS_00014403-exon-sc0000187-1575043694:441771..442531 | TCONS_00014403-exon-sc0000187-1575043694:441771..442531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:439408..442531 + |
Blast
BLAST of TCONS_00014403 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3) HSP 1 Score: 121.324 bits (303), Expect = 1.485e-32 Identity = 63/150 (42.00%), Postives = 90/150 (60.00%), Query Frame = 3
Query: 72 AKQTMADFKNDILKTHNTYRKTHRSNPLKWSNKLQANAQRWADKLAKKGYLQHENQSDEG---ENIACMKGAELTGERAATMWYDEVKYYDYSKPTFSSKTGHFTQLVWNGSTELGVGRATASNGMQFVVARYNPPGNIL--GKFPDNVF 506
K F N++LK HN YR+ H PLK L AQ++++ LA L+H +S G EN+A + TG+ A WY E+K Y++ +P F+S TGHFT +VW + ++GVG+A+AS+G FVVARY P GN++ G F +NV
Sbjct: 2 GKSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLA-WASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVL 150
The following BLAST results are available for this feature:
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