TCONS_00014404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014404
Unique NameTCONS_00014404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014404 ID=TCONS_00014404|Name=TCONS_00014404|organism=Clytia hemisphaerica|type=transcript|length=1880bp
GGAAGAAAAAAGCTCAAAAGCTATTTTcctatttcaaatttcaaaatgac
gTGTTATATGTAGGTGTATAAATCCTATAAAACCTCTAGAAAATCCTTAA
GAAGGCCATAAAGTACCAAATATTTGATTAAGACATACAAGTGATTTTGA
AAGGATTTTTGTTCAGcAATGGCCGACTTCAAGAACGACATTCTTAAAAC
ACACAACACATACCGTAAAACACATCGATCCAACCCTCTCAAATGGTCCA
ATAAGCTTCAAGCCAACGCCCAAAGATGGGCGGATAAACTAGCAAAGAAG
GGATATCTCCAGCATGAAAACCAGTCAGATGAGGGAGAAAATATCGCTTG
TATGAAGGGAGCAGAGCTGACTGGTGAACGAGCTGCAACCATGTGGTACG
ATGAAGTCAAATATTATGATTACAGTAAACCAACATTCAGCTCCAAGACA
GGACATTTTACACAGCTTGTATGGAACGGATCAACTGAGCTTGGTGTAGG
CCGCGCGACCGCTTCAAACGGTATGCAATTTGTCGTCGCTCGATATAATC
CACCCGGAAACATCCTTGGAAAATTCCCAGACAACGTCTTTTCATCAAAC
GGTAAACCGCCACCAACGACGTCAAgcaacaatagcaacaataacCGGAC
GACAAGAAACAAGCCTGAAAAACGGCAACAACAACCATCCAGTGATAAAC
AAACTGACAAAGATTTCAAGAATGCTGTCTTACGTACGCATAACCAATTA
CGTAAGCATCACGGCTCAGGCCCACTACGTTGGAACAGTTCTCTGGCTAG
CCAAGCGTTAAGTGCGGCACAAGAGGCGGCTGAAACCAACACTCTACGCT
CAGTGGATAACAACAAAGTGGGTCAAAATATGGCAGCGATTTCCGGAGCT
GAATTAACGGGTGAAAAAGTTTCCAACATGTGGTATGATgaggaaaagaa
atataattATAGAGAAGCCAAATTCAGTTCAAGTACAGGAAGTTTCACAC
AACTTGTTTGGAAAGGGACAACCGATCTTGGTGTGGGTAGAGCTTTCGGA
CCTAACGGACAAACGTATGTTGTAGCTTTATACCAACCAGCGGGAAATGT
TAGAGGACTTTACAGTGAAAACGTTTTACAATCACGTGGTACGAGGCCTG
GGTCCAAGAAAGAGGATCAAGGGTGTGGCTGTGCCATCATGTAACACCTT
CCAAATCAAAGATAATCTGATGTTTTGCTGACTaataggaaaaattattt
tcaaaatggggACAGCTAAAAGTATGGCGATTCCTTCAAATGACAATCGC
CTTAAGTAGGCGTTCACTTTAAATGGCGGATAGCTGCCaaaagtttactt
gaaatagaCGGCCATGATAGATATCGTTAAGAAAATATGATATTCTTTGA
ATTTGGGTAGAACAAAGTTCATTTTTGATGAATATTCTGAAGACTGTCAA
ATAACTCGACTCTCAAGGTTGATTTAACCGGCAGGGAAACGTTTTTCTAG
CGTTACTTTGGCTAAGGGACTAAACTTGCTTGATTTATCCTTTTTTTTAT
CCACCATTATTGCTATGAACTGTATATGTATATCCAAATGTCAGAAAATT
TTACAAACGATCTAAAATTTTATGCTGGttcttaaaaatttagtttAGTT
TTATGCATACAGTATAaccttttctttgaaaattcattaatattaataaa
attgaaaacattttttgatttatgatttgaTTTATAAATTAACGGCTAAT
TTTATAGCTAATGTTCTTAAGTCTGataatttttgtagatattaTGATTT
TTTCCGGAGAAAGTTAATTTTCACGGAAcctttttgtatattttatttat
aGTTGATGATTTTTTGGGATAATAAATCAG
Run BLAST on NCBI

transcript from alignment at sc0000187:440476..445621+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014404 ID=TCONS_00014404|Name=TCONS_00014404|organism=Clytia hemisphaerica|type=transcript|length=5146bp|location=Sequence derived from alignment at sc0000187:440476..445621+ (Clytia hemisphaerica)
GGAAGAAAAAAGCTCAAAAGCTATTTTcctatttcaaatttcaaaatgac
gTGTTATATGTAGGTGTATAAATCCTATAAAACCTCTAGAAAATCCTTAA
GAAGGCCATAAAGTACCAAATATTTGATTAAGACATACAAGTGATTTTGA
AAGGATTTTTGTTCAGGTAGGTTTATATTAGGATTACTAAGGACTTAAAA
TTGTGACAAGTAAAAGGGGTTTTTAAATATTGCTGGGAAAATTCGAGATT
TGAGTGGTATTGAGAGAAATAATGGAACGATATGATTGTTGGATAATTCC
ACGACTTGTATATCATTTTCGTTTGATCCTCTATATATCATtatcaagaa
aaattgaagtGAAAGTACCTAGCCACGATAGAATTATTAGagtttttgaa
tatattttgcaTTGCATGGTGAAGAAAAATGCAAATGTGTTTTGATCCGG
AGATTATGAAATGACATAGGGAGCACCTTGcgtttttgaatttgattttc
tttttggatCTAATCAATATTCTTCTTTGTTAAcatattgacaatttttt
tttattgtagcAATGGCCGACTTCAAGAACGACATTCTTAAAACACACAA
CACATACCGTAAAACACATCGATCCAACCCTCTCAAATGGTCCAATAAGC
TTCAAGCCAACGCCCAAAGATGGGCGGATAAACTAGCAAAGAAGGGATAT
CTCCAGCATGAAAACCAGTCAGATGAGGGAGAAAATATCGCTTGTATGAA
GGGAGCAGAGCTGACTGGTGAACGAGCTGCAACCATGTGGTACGATGAAG
TCAAATATTATGATTACAGTAAACCAACATTCAGCTCCAAGACAGGACAT
TTTACACAGGTATGCAGATTTTCATTTCTCTAATTACAAGCACGACGTAC
CGGGTACGGCAGTCCGTCGGCCaccgtaccagattttcacgaaaaatcCT
AAAATTATCCTCTTCTGTCGGAAAAATCGCTTAAACTCCTCATTCTCCGT
ACCAGATTTAAAAAGCTTCCGTTGTGCCTGCTAATTATAATattcatgaa
aatattttcataagcCATAAGAAAAGAGGACCAAATGTCGCTTCCAGATA
TATTTTTACCCAAAATTATAATTTTGGCTTGTACTGTTTGTGTCACTTTT
AAACCTTTTGGGGAGAAAGTTGACAGAGTCCAAGTTTCTCTGAGTACGAC
ATTGCTGTTAAAAATATACCTATCCTAGTTCCTGAGATTTCTGACAGATC
TTAAGCAGTGGAAATATTGTAATATTCTTTTTCTGCTCTATCTAGCTTGT
ATGGAACGGATCAACTGAGCTTGGTGTAGGCCGCGCGACCGCTTCAAACG
GTATGCAATTTGTCGTCGCTCGATATAATCCACCCGGAAACATCCTTGGA
AAATTCCCAGACAACGTCTTTTCATCAAACGGTAAACCGCCACCAACGAC
GTCAAgcaacaatagcaacaataacCGGACGACAAGAAACAAGCCTGAAA
AACGGCAACAACAACCATCCAGTGATAAACAAAGTACGTATCTTGATGAA
ATATCTAAGGGGCtcataaaaatgaaagtcaAACCTACGGGTGGACTAGC
TCCACAGAAGCCAACCAGTTCCACACCTAGAAATGGATTAGTGTTGCAAC
CACGGCAACCTGTTTCCGTTTCACTACCGACGACTGGTTTGGTAGTTCAC
CAACAAAAAGCTACTACTTCCACTCCCGTACCAAAGGGTGGATTAATAGT
TCATCAGTATACAACGACGACCGCTACTTCAGGCCCTAAAAGCAGCCTAA
TGGCTCATCAGCGCCACGAAGCTGGTCCTATTTCTGTCACCATTAAGACA
GAACGTAGAGAGGAGATAAGCTTCTTTCGAAGAATTTCACACGGGGGATA
GAATGCTTTTACATTGTTTTTAATAGTTAGTTATTATATCCAATGCGTTT
CAAAGCGaaggctagaagcgaatcttcaatctttcccAATCAAGAAAAAG
CGGAGCCAATCTAgtactttattttgttttcgtttttaacatttttcaaa
atttgcaatAGTAATGCTTTCAAGCAAGTAGTTTTAGATTATATTAACCT
ATCCTACCTGTATATATGTTAACTTGACCATGGGATGTGACCaaactttc
tatgtttttttAATCTGGACGATCTTTATGTGAAAATTTGTTAACGCTCT
AACAGAGTTACTTGGACTTGGACATTActtattttataatttattaacaa
aatctttcaTTGTCTTGTCTTATATAAATACCCGTGAAAACTTTTTAACC
GTTGTTTTCGCCCCTTGTTTGTACTATAGTTTGTAATATTTTTATGTTGT
ACATATAACAAtgtatatttgaattttttttgagatatTTATCTTACGAA
ACATTTACGcttctgcaatattttttttacttgagaATTTTAAAACTGAC
TGTTAAAACTATACTGCTGACAACCAGTACCTCATAGAACTGTAACtgaa
aaaacataaaacaaaaaccATCTTTGAAATAAGACAGTTTCTGACCACAC
CCGTTTGATTTGACAACACAATACCATACAACATGCTATTCCGATCTTAG
AGTATGTACAACATGCCTAGTTTCAGCCTCGAAAATTACTTGAATGAATA
AACCATAATTTTGGCAAAACTGTTTCAGCTCTcattatttttaagaaaat
gttcTATTGAAAACTAAATTTGAACCAATAAATTAGAACGAAAATTGGGA
AGTTTAAACACATTAGATATTATGGAATAATTCGttacaattttttgaaa
ttttaatacaaaggaatttaaaaaaagaaaattacacAAAACTTTTTAAC
AGTTCAgcttgtatgcttataaattcTCCTTCCCCAAATCTCAGCTATAA
TCTCACTGATTATAattgttatgcttataaatgtgTTTTTGGTTCTCCAG
TCTTCAAAGAACACAGTTTTTCATACCtactttttatttaatttgaacaa
attcTGAATCGCCCCTAAATACAGAGACACGTTCTTCGACGTTTTAACAT
TTTAACAGAGGTTTTATTTAACAAAGTTCATGGTCTAATGAGGTTACTTT
ATTGACAGCAGACTTTGACTTTAACGATATTTAGATCAAGAATTACTTAA
CGTGAATAACTTTGTttaaaatactaattttttttcagcttATCCGAGAT
TTCTAAATATATGTATTAGATTTTCAAGGGATTTTCAACTCACTGACATT
CCCAGAAGGAATGCTTAAGAACTGTGACTTTTACTAATTTCGAGTCTCCA
AAGACGCAATAACTTAATCAaaacgattttttataagaacagactatata
agaacataaggcttcgatggccaaaatgttaagtacaagttaagaacatt
tttaggctttaagaaaaaacttcaaaaattttggatgttcttattaaaaa
aaccgTGTATTTCAATAAAACGTTTACTCTATCTATTTTAGCTGACAAAG
ATTTCAAGAATGCTGTCTTACGTACGCATAACCAATTACGTAAGCATCAC
GGCTCAGGCCCACTACGTTGGAACAGTTCTCTGGCTAGCCAAGCGTTAAG
TGCGGCACAAGAGGCGGCTGAAACCAACACTCTACGCTCAGTGGATAACA
ACAAAGTGGGTCAAAATATGGCAGCGATTTCCGGAGCTGAATTAACGGGT
GAAAAAGTTTCCAACATGTGGTATGATgaggaaaagaaatataattATAG
AGAAGCCAAATTCAGTTCAAGTACAGGTAAtgagcttttttataagaatc
agtaaaCTTTGACTGGCCctcctttgttcttatttttctttatctttatc
tTGAAGTACAGTGGAGTGTCTTTAACATAAACACGCACAAGGAACACTTT
TTCGAGtaatggaaatttcaaattatggAGTAAGGCTAAGGCATtagctg
aagggaccataaaaattgttcgagataaggagacattcgagttaaggaga
cattcgagttatggaggtttGAATTAAAGAGACTTAACTTAATTCTTGAA
TACAGTGGAACCTGTCTAAAGCGGAAATTGTATAAAGCGGATATTTTTTT
AGGACGGGTACTTTCACACTCTCCTTGAGACGGTATATTTTAAGGTCAAT
CTCTCGTGAAAGGTTTTGACATGGCTGGAAAGATTCTACATACTTTTAAG
GTTAAAGATATTTACCAAAACTGTAttgaaatatttcttcttttgtATTT
CCAGGAAGTTTCACACAACTTGTTTGGAAAGGGACAACCGATCTTGGTGT
GGGTAGAGCTTTCGGACCTAACGGACAAACGTATGTTGTAGCTTTATACC
AACCAGCGGGAAATGTTAGAGGACTTTACAGTGAAAACGTTTTACAATCA
CGTGGTACGAGGCCTGGGTCCAAGAAAGAGGATCAAGGGTGTGGCTGTGC
CATCATGTAACACCTTCCAAATCAAAGATAATCTGATGTTTTGCTGACTa
ataggaaaaattattttcaaaatggggACAGCTAAAAGTATGGCGATTCC
TTCAAATGACAATCGCCTTAAGTAGGCGTTCACTTTAAATGGCGGATAGC
TGCCaaaagtttacttgaaatagaCGGCCATGATAGATATCGTTAAGAAA
ATATGATATTCTTTGAATTTGGGTAGAACAAAGTTCATTTTTGATGAATA
TTCTGAAGACTGTCAAATAACTCGACTCTCAAGGTTGATTTAACCGGCAG
GGAAACGTTTTTCTAGCGTTACTTTGGCTAAGGGACTAAACTTGCTTGAT
TTATCCTTTTTTTTATCCACCATTATTGCTATGAACTGTATATGTATATC
CAAATGTCAGAAAATTTTACAAACGATCTAAAATTTTATGCTGGttctta
aaaatttagtttAGTTTTATGCATACAGTATAaccttttctttgaaaatt
cattaatattaataaaattgaaaacattttttgatttatgatttgaTTTA
TAAATTAACGGCTAATTTTATAGCTAATGTTCTTAAGTCTGataattttt
gtagatattaTGATTTTTTCCGGAGAAAGTTAATTTTCACGGAAcctttt
tgtatattttatttataGTTGATGATTTTTTGGGATAATAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008057XLOC_008057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014404-exon-sc0000187-1491911889:440476..440641TCONS_00014404-exon-sc0000187-1491911889:440476..440641Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1510915933:440476..440641TCONS_00014404-exon-sc0000187-1510915933:440476..440641Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1575043694:440476..440641TCONS_00014404-exon-sc0000187-1575043694:440476..440641Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1491911889:441036..441334TCONS_00014404-exon-sc0000187-1491911889:441036..441334Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1510915933:441036..441334TCONS_00014404-exon-sc0000187-1510915933:441036..441334Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1575043694:441036..441334TCONS_00014404-exon-sc0000187-1575043694:441036..441334Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1491911889:441771..442008TCONS_00014404-exon-sc0000187-1491911889:441771..442008Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1510915933:441771..442008TCONS_00014404-exon-sc0000187-1510915933:441771..442008Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1575043694:441771..442008TCONS_00014404-exon-sc0000187-1575043694:441771..442008Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1491911889:443967..444251TCONS_00014404-exon-sc0000187-1491911889:443967..444251Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1510915933:443967..444251TCONS_00014404-exon-sc0000187-1510915933:443967..444251Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1575043694:443967..444251TCONS_00014404-exon-sc0000187-1575043694:443967..444251Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1491911889:444730..445621TCONS_00014404-exon-sc0000187-1491911889:444730..445621Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1510915933:444730..445621TCONS_00014404-exon-sc0000187-1510915933:444730..445621Clytia hemisphaericaexon
TCONS_00014404-exon-sc0000187-1575043694:444730..445621TCONS_00014404-exon-sc0000187-1575043694:444730..445621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:440476..445621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.417014	1.10279	0.826534	1.5472e-08	0.0556527	0.018446	0.0351722	0	1.12869	11.4602	4.37878e-10	4.89261	6.43295	5.73792	0.778912	0.830021	0	0.547767	13.7203	24.6098	5.38292	7.99703	0	1.29505	0.00540356	3.74985	2.19685	1.25057	8.20712	4.03742
Blast
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BLAST of TCONS_00014404 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 4.679e-32
Identity = 64/148 (43.24%), Postives = 91/148 (61.49%), Query Frame = 1 
Query:  163 SAMADFKNDILKTHNTYRKTHRSNPLKWSNKLQANAQRWADKLAKKGYLQHENQSDEG---ENIACMKGAELTGERAATMWYDEVKYYDYSKPTFSSKTGHFTQLVWNGSTELGVGRATASNGMQFVVARYNPPGNIL--GKFPDNVF 591
            SA   F N++LK HN YR+ H   PLK    L   AQ++++ LA    L+H  +S  G   EN+A     + TG+  A  WY E+K Y++ +P F+S TGHFT +VW  + ++GVG+A+AS+G  FVVARY P GN++  G F +NV 
Sbjct:    4 SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLA-WASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVL 150

HSP 2 Score: 102.834 bits (255), Expect = 6.557e-25
Identity = 60/152 (39.47%), Postives = 89/152 (58.55%), Query Frame = 1 
Query:  697 KQTDKDFKNAVLRTHNQLRKHHGSGPLRWNXXXXXXXXXXXXXXXXTNTLR---SVDNNKVGQNMAAISGAELTGEKVSNMWYDEEKKYNYREAKFSSSTGSFTQLVWKGTTDLGVGRAFGPNGQTYVVALYQPAGNV--RGLYSENVLQSR 1137
            K   K F N VL+ HN+ R+ HG  PL+   +L  +A   ++  A T  L+        + G+N+A  S  + TG++V++ WY E K YN+++  F+S TG FT +VWK T  +GVG+A   +G ++VVA Y PAGNV   G + ENVL  +
Sbjct:    3 KSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS-YDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPPK 153
The following BLAST results are available for this feature:
BLAST of TCONS_00014404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAPR14.679e-3243.24Golgi-associated plant pathogenesis-related protei... [more]
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