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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014480 ID=TCONS_00014480|Name=TCONS_00014480|organism=Clytia hemisphaerica|type=transcript|length=3195bpRun BLAST on NCBI protein sequence of TCONS_00014480-protein >TCONS_00014480-protein ID=TCONS_00014480-protein|Name=TCONS_00014480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=976bp MKTKEKSNWTNCFGSIVQVQAQLCHTEISKGIQLFIRISLKKDIEDGMDVRun BLAST on NCBI transcript from alignment at sc0000188:114567..128841+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014480 ID=TCONS_00014480|Name=TCONS_00014480|organism=Clytia hemisphaerica|type=transcript|length=14275bp|location=Sequence derived from alignment at sc0000188:114567..128841+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000188:114567..128841+ >TCONS_00014480 ID=TCONS_00014480|Name=TCONS_00014480|organism=Clytia hemisphaerica|type=CDS|length=49827bp|location=Sequence derived from alignment at sc0000188:114567..128841+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014480 vs. Swiss-Prot (Human)
Match: TIAM2 (T-lymphoma invasion and metastasis-inducing protein 2 OS=Homo sapiens GN=TIAM2 PE=2 SV=4) HSP 1 Score: 263.848 bits (673), Expect = 3.325e-72 Identity = 213/715 (29.79%), Postives = 339/715 (47.41%), Query Frame = 2
Query: 1022 RKAAWLLVKCLLQHSKKGRLEMSNHRKWRKYWVALKGVELLFFQADEKTVTTEDMNEPTFQLDVDSSLVQAVPEYTRLENVFSICTKQGNAYYLQATSQTETENWMHYIHTSAAAAFARKRGLENITPLLLQEIETLQXXXXXXXXXXXMAVLQLKIEKESHIRQNITDQIISWEESLEDIHATNFRLRCYIAAIESTHIPNPQELLTHVSRPTKHALSKLGLFSVTSFISYVNTKNYVCLTTTAASNEKRAKNVRSTKYKSATNGGIKARFLSSLKIADDNVVTAIRNRHSPQTKNRRTXXXXXXXXXXXXXXXXXXXGARKFGRVGDLLYIQLPDARSCCLPYEPNLKICELMERVCMKENFDSLDYFMML--MMNDNNKHGLLDYTIPKDNVLLDTFNYTRLKLCPKLQYDVTLTNPADYEHGAFGLDMEQTLDERIMVT--FVEDGSP---ARKSGIVVEDEVIEINGQNLRVINNSFNDILEVMNVSSSINLKLRSKRIDDPKKTFQTTESLISFL------VCPPPPKSLQPDLSDDLLNTLIVPAPTDLE---ESTTSSYHSASDKPSLGKEAKVEDIDDFLHQTEQVNMMTR-----EMNSIPIERSTSTAHSRKPGVH------LRKAILELRDTEKTYVKNLRILLERYLIPLKEENFLPKDEAELMVNNVREIFDFQSTFFERLKSIIRNDSNFDEFTETKQFQ 3085
RKA WL K L+ K+ +LE+ RKW++YWV LKG LLF++ K + + + P L + S+VQ+VPE+ + ENVF + G+ Y QATSQT+ ENW+ +H++ A+ FA+K G E+ LL + + L +K+ + K+ KMA LQL + + R+ I +QI WE++LE H FR+RCY+A+++ +PNP+ LL SRP+K AL +LG+ SV+SF + V +++ L S +R +N K SSLK D T R K + R DE + S+ G + Y+ D + +P ++ +++ C + Y + L +++DN ++Y IP + Y +++ P YDV LT FG + +DER ++ F+ D P A G+ +E++ +NG+ + ++ +E + S+ L L + R D K T T+ S + PPP +S L ++ L+ D + TT S +D +L + + E ++ EQ+ + R + N + R R H LRK I EL DTEK+YVK+L L E YL PL+ E FL +DE E + ++ E+ +FQ F E L+ I S+F+ QF+
Sbjct: 508 RKAGWLFFKPLVTVQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKN-SMDQSSAPRCALFAEDSIVQSVPEHPKKENVFCLSNSFGDVYLFQATSQTDLENWVTAVHSACASLFAKKHGKEDTLRLLKNQTKNLLQKIDMDSKMKKMAELQLSVVSDPKNRKAIENQIQQWEQNLEKFHMDLFRMRCYLASLQGGELPNPKSLLAAASRPSKLALGRLGILSVSSFHALVCSRDDSALRKRTLSLTQRGRN--------------KKGIFSSLKGLD----TLAR-------KGKEKRPSITQVDELLHIYGSTVDGVPRDNAWEIQTYVHFQDNHGVTVGIKPEHRVEDILTLACKMRQLEPSHYGLQLRKLVDDN-----VEYCIPAPYEYMQQQVYDEIEVFPLNVYDVQLTKTGSV--CDFGFAVTAQVDERQHLSRIFISDVLPDGLAYGEGLRKGNEIMTLNGEAVSDLDLK---QMEALFSEKSVGLTLIA-RPPDTKATLCTSWSDSDLFSRDQKSLLPPPNQS---QLLEEFLDNFKKNTANDFSNVPDITTGLKRSQTDG-TLDQVSHREKMEQTFRSAEQITALCRSFNDSQANGMEGPRENQDPPPRSLARHLSDADRLRKVIQELVDTEKSYVKDLSCLFELYLEPLQNETFLTQDEMESLFGSLPEMLEFQKVFLETLEDGISASSDFNTLETPSQFR 1181 The following BLAST results are available for this feature:
BLAST of TCONS_00014480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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