TCONS_00014488 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00014488
Unique Name	TCONS_00014488
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	978

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000188:169569..174153+

transcript sequence

>TCONS_00014488 ID=TCONS_00014488|Name=TCONS_00014488|organism=Clytia hemisphaerica|type=transcript|length=978bp
GTTTCATGAGAAGGCTTTCACATGGCTTTATTTGACGAAATCAGTTTGTT
GCAAGAAgttgaaaaacttttgaaagaaatccGTGCAGAAATCAAGTATG
CAGAGAATGTGCATTACCACAGATCTTTCTCTAGCACAAGcacaattcaa
aaattcaacGATGATGTTTCGGTAGAAAATAAAAGCAACAAGTCTGTCCA
CTCCATTTCCAATGATAGTGATGAAGttttccTGGATAACGCAAATGAGC
AGCATTTGGAACAAAAGCCACTGAAAGAGAATCCCGTCAAAGAATGGGGC
GATTCGTTCGATAATCTGGTGAATGATATAATTGGCATGGAATATTTCAC
GGAATTTCTGAAGAAAGAATTCAGTGAAGAAAACATACAATTCTGGAAAG
CTTGTAACCATTTCAAGACATTCAACTTTCAATGTCAAGCCCAAATGGTA
GAAAGTGCACGATCGATATACACTACTTTCCTATCTCGCGATGCACCAAG
TCTGGTCAATGTGAATCAAAGTGTAGTGGAGAATTTGGAGAAATACTTGG
ATGAACCAAAGAGAAGCATGTTTGACCAGCCTCAAGAGCAGGTCTTTCAA
CTGATGAAATTCGACAGCTACAAACGGTTCTTGAAGTCGGACAAGTACAA
AGAGTTGTTGGAGCAGGAGAAAAACAAGATAGCATGGAAAGACTACAACG
TGAAGGACCGCAACCAATTCAATATTTTCAGCAAAGTTATGGGATGGACT
GCACGGCAAAAATAAATTCTTACGCGTCATTTTCCCCGATGGAACGTCGA
CCATCATTTCAGCGGAAGAAGGCTCCACATTGAAAGATTGTTTGGGTGAT
CTTTGCCGTTCGAAGAAGATTTTATTGTCGTCTTATGATGTTACTGTTGG
TTGCCCTAGAAAGGTTGTTGGACTAGATGAAGAAGTATCTTGcttgaaag
aaaatgtcatcTTCTTTGAGAAACGAAC

Run BLAST on NCBI

transcript from alignment at sc0000188:169569..174153+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00014488 ID=TCONS_00014488|Name=TCONS_00014488|organism=Clytia hemisphaerica|type=transcript|length=4585bp|location=Sequence derived from alignment at sc0000188:169569..174153+ (Clytia hemisphaerica)
GTTTCATGAGAAGGCTTTCACATGGCTTTATTTGACGAAATCAGTTTGTT
GCAAGAAgttgaaaaacttttgaaagaaatccGTGCAGAAATCAAGTATG
CAGAGAATGTGCATTACCACAGATCTTTCTCTAGCACAAGcacaattcaa
aaattcaacGATGATGTTTCGGTAGAAAATAAAAGCAACAAGTCTGTCCA
CTCCATTTCCAATGATAGTGATGAAGGTGCTTATTTTTTCGCACAAACTT
TCTAAAATAGTCGGGTCTTGTATTCTGTTGaatattgatttatttattAT
CTTGTGTTGTTTTGTGACCCCGGCTAGCTGTTTAACGTCATAAAACGCTA
TTTAATTGAATAAAAGCAGGTTTTTGAACCTGTCAACCGAGGGGGAGGTA
ATCATTTGAGGGGGGGATATGAATTGAAACTTTTATAATTACTTTCATCA
AAATTGTAAAGTATAAATTgtattttgtttagttttccTGGATAACGCAA
ATGAGCAGCATTTGGAACAAAAGCCACTGAAAGAGAATCCCGTCAAAGAA
TGGGGCGATTCGTTCGATAATCTGGTGAATGATATAATTGGCATGGAATA
TTTCACGGTATATATAtgcagcacctgaccccgagaatgtagtaatgTAG
AATgcaggtttctcatttttttaatattgtaGCTAATCtaatagttcaac
ttcataaaaagttgtttcagagtATACTGTTACATCTTACTGATTATTTC
TGgacaaaattttaacttgaattaatttttaccaacgaaaatctgaatgg
aagttgattggatactacccgaattgagacatttttcaaataatagaatt
tctatcccaatttggacttaagtagaaatttttgaacccgcgttgttaca
ttattcacatatttcaacacaaaatttttttcaacctacaaaattaaaac
aactttcttgtctcttttTTTGTCCTTTcttaaaagaaaggaaaagtaAA
ATTACTTTTCCTtatttgtagcacgataaaattaatatctttgttaattt
tgtGTCAGAGTATACAGGTATACGGACCCCAAAAACCATGGTACCCCAAA
AGCAGCTgtatttctaaagtatgaatttcaccgaaaTTCGTGAAATTCCA
TTCtcaacaaccgaatcttttcacctacattctgggggttaaaaagtgaa
aaaacccTATTTTCAGAATAACACAATGCTCGATTTAGAGTATtgttttg
gcataaaatatttctaaaatttgctgttagAGTTAAAATCCAAttggaaa
aatatcaacattttactattactagatatAAAGCCATAAAACTGGGcgct
ataacgaaaatgggagtcaacttcaaagaccaaaaaaattggcctatcta
tcaaaagtaattaaACTAACCCCTGgaaaaggattttgggagttaaaaat
ttcgttgaaaacattcaaaatcttttaaaatgcaaatctacatctttcag
gtctgattcaaatttcacctacattctcggggtcaggtgctgtactcTCT
CCTTCTTTTGCACTAGCCGTCTATACTTTAGTGACATTTATTGCATTTGT
TTGAATACAATAATAAGTTTATGTCATCTTcagagtttttttttcagtgt
cATGAAAACGATGAAAGGAAATTACACTgaaagctttatttttcttttct
ctctgtgtatttatctttttattttgtttttattgtactTTTCTCACAAA
GTAACATTCGAATGAAATCACAACACGTTCGATGAAAGAACGctgtaaaa
aatattaaaaactcaattttgaagaaattggcGCCTCTTCGAGAGTGTtt
ttaacgattaattgctctctaaaGGGTGCaatttgtatatgtaatcacat
gataacgagtgcaatttgaaaataattgcacgagtgatttttgttgttgt
taatTCTCACAAAATTAATTATAAACGTTCGATGAAAAAGGATGCAATcg
acgattaattgctctctttgaaggtgcgccaaattagaaaaaataactca
tcgtgcgattaacaAAACTTAAACTGTTTCAATAAAAGACCAATGGGCTC
TCTGTCTTCAAATTCTACATTCATTAAATTGGGAGAACATCACTGTATGA
AGGGATGCTTTGTAGTATAGTTTGTAGTATTCATTTTCCTAATTGTATTG
TATTATCTTGTTTCATGTATTCAACTCACTCACTCATTTCTGTTCACATA
ATACAGGAATTTCTGAAGAAAGAATTCAGTGAAGAAAACATACAATTCTG
GAAAGCTTGTAACCATTTCAAGACATTCAACTTTCAATGTCAAGCCCAAG
TAATTTACTTTTCATAATAACCTTTAATTCAAAGTTTGCAATTTTTACCA
AGAGAGAAATGCACTTCTAAATCTGTACAATGCTTTCagatttttggcaa
ttttcctCTACTTGCCCTACAGCTTGAATTCAAATGACCTTATCTTTGTA
CTAGATGGAAGATTAAAGCGGGATAATTGGTCAAGTTGTCAATTCTGAAT
ATATATATATGTCCTGGTCATTTGCTCATTTATACTTTGTCTCTATTTAT
AGATGGTAGAAAGTGCACGATCGATATACACTACTTTCCTATCTCGCGAT
GCACCAAGTCTGGTCAATGTGAATCAAAGTGTAGTGGAGAATTTGGAGAA
ATACTTGGATGAACCAAAGAGAAGCATGTTTGACCAGCCTCAAGAGCAGG
TTCGATACATTATTTTTCTCTCAACAGTTTGACTAATTTGATTTGATCCT
AAAGAGCATGATTCAGTCCTTAGAAAGTGAGGATCCATTGTAATCCATCC
TCAACGGTAAGAAATTGAAAGACTCTTTACTGACACTAGAAAAAAAGACA
CCGCGATGTATGGTGCAAGTTATAAGTCTATGAATTTGTTTTGCACTCCA
GGTCTTTCAACTGATGAAATTCGACAGCTACAAACGGTTCTTGAAGTCGG
ACAAGTACAAAGAGTTGTTGGAGCAGGAGAAAAACAAGGTAAGTGAGACA
CAGCTAAATATCGCTTATGTAGGAGCTTACAATATATTTAGGAAAAGAGA
TACACCGAAACCGGTTCGAACCACATAAGTCATTTGTCAGTGATTATTAT
TGGTATCCATAATTCTGCATATTTGATGtacaaaataaattattaaaaag
ttGATCTTATACTTCTATACGGCACAGGTGtgtcttttattttaaattct
ttttataagaaaacttcatctaagaatatcatgaattttctATAAAAGTG
CAATCCATTTAAAAACATAGATAAAAAGATTGAAGCGATTTTACTAGTTT
CCTATAAAGGATGTAACCCTTGTTGTCGAAATATAGGCCTTTATTAAACA
GGTACTCTGATAAAATAATTGTTTCAGGAGTTTTTAATTGCAATGCATCG
TATCACATTGAGATAGAGTACTATATCCGGTAATGTTATTCCAGAATAAT
ACTTTTAGCAACGGGCGCATCATATCCTTGGCTATTAGCTAGTTAAGCAG
ATAAGTTTTATCTAAAATTCAGAAGCAAAAAGTGCCAACCAAAGTAAACC
AAAGATTATCACAAATTATAATACCAAATGGTAGGTAGCAACAAAAAGAA
TGTACACAAGAGACATATCATCTTCTATCATTTCGAATTTAATTTCTTTA
CTTTCTGCAGATAGCATGGAAAGACTACAACGTGAAGGACCGCAACCAAT
TCAATATTTTCAGCAAAGGTGAGTTTTCATCACAGTCTCAACGTCCTGTC
CAATGAAATGTTTCATACAACAACAAAGTATCAAAATTATCCTCTACCTG
CCTTTATGTGTTCTTTCAGATAAACAATTTGTCAAGTCGAATGCTTTGGA
TGATTGTTTCGATGCACAAAAACCGCAGGTAGACGATAtgttttttacat
atttttatgTTGTATGTATGCTTTTGATTGCTCACATCTCACTTCTTTTG
AATTGGgcaaaccaaataaaaactaTACTTTAAACCATACCCTATGAGCA
AACCATGAATATAGCAGCTCATTCGGCTCCTTTTCACGTTGTACTTTTTT
TCAACCACGTGATGTCTGCTGCTATGTTTTATCGAGCACCCTTTACAATT
TTGCTATTAGTTATGGGATGGACTGCACGGCAAAAATAAATTCTTACGCG
TCATTTTCCCCGATGGAACGTCGACCATCATTTCAGCGGAAGAAGGCTCC
ACATTGAAAGATTGTTTGGGTGATCTTTGCCGTTCGAAGAAGATTTTATT
GTCGTCTTATGATGTTACTGTTGGTTGCCCTAGAAAGGTACCTTTTCTTG
CAATATCTTTGTACGCCTGTTTATTGCGTTACTCAGAATTATTGTATCTT
TTATAATCACACGTTGAAATGTACGAAGCGATGTAGTTAGAAAGATGATA
TCGAGAATACCACTACTAGACAGTCAACTTTCTCGTTACTTTCCTCACCT
TTTTTCATTTTACTTTCCAGGTTGTTGGACTAGATGAAGAAGTATCTTGc
ttgaaagaaaatgtcatcTTCTTTGAGAAACGAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008103	XLOC_008103	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000188	supercontig	sc0000188:169569..174153 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0136293	0	0	0	0.139992	0.497858	2.29064	2.49046	1.7866	1.14741	0.894784	0.152009	0.720686	1.98958	0.376995	2.66861	0	0.938568	0.594763	0	0	0	0	0	2.33967	2.83425	0	0.14295	0	0.344965

Blast

[Close]

BLAST of TCONS_00014488 vs. Swiss-Prot (Human)
Match: RGS14 (Regulator of G-protein signaling 14 OS=Homo sapiens GN=RGS14 PE=1 SV=4)

HSP 1 Score: 132.494 bits (332), Expect = 2.376e-34
Identity = 74/181 (40.88%), Postives = 98/181 (54.14%), Query Frame = 1

Query:  127 FSSTSTIQKFNDDVSVENKSNKSVHSISNDSDEVFLDNANEQHLEQKPLKENPVKEWGDSFDNLVNDIIGMEYFTEFLKKEFSEENIQFWKACNHFKTFNFQCQAQMVESARSIYTTFLSRDAPSLVNVNQSVVENLEKYLDEPKRSMFDQPQEQVFQLMKFDSYKRFLKSDKYKELLEQE 669
             SST+  Q   +       S+ S+HS+ +     F            P +E PV  W  SF+ L+ D +G+ YFTEFLKKEFS EN+ FWKAC  F+        Q+ + AR+IY  FLS  A S VN+++      E+ L EP+  MF   Q Q+F LMKFDSY RF+KS  Y+E L  E
Sbjct:   24 LSSTTGPQGQGEG----RGSSLSIHSLPSGPSSPF------------PTEEQPVASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFLSSQALSPVNIDRQAWLG-EEVLAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAE 187

The following BLAST results are available for this feature:

BLAST of TCONS_00014488 vs. Swiss-Prot (Human)

BLAST of TCONS_00014488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RGS14	2.376e-34	40.88	Regulator of G-protein signaling 14 OS=Homo sapien...	[more]

You are here

TCONS_00014488 (transcript) - C. hemisphaerica