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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014489 ID=TCONS_00014489|Name=TCONS_00014489|organism=Clytia hemisphaerica|type=transcript|length=1640bp
TATAAGTACAAGTCATTTGCgatgcaataaaaaatataattgtcCTACGT
TAagttctttttgtattttgaatgttttgttaaaagtaattaaatcaaat
taaattagGGTGCAGTTCACCCTACAGCTAGTGGCTTAACGATTGAATTT
GAAAACAACAAAGaacatttcaatattttgccaatCATGTGTGCAGATCT
TTGCTTTGTAAAGGAGGTTCTAGGCAAGTGTTCCTGCACCAGTCTATATG
GCTGCTTTTATTGTAAAAAACCGATTGCAGAATGGGATAAAAATGATGCA
CAGACAGAAGAACTACAAACAATGTCGCAAATATCACTGGATGGTCAAGA
AGCAGTTAGGGTACTTGGTGCGAATCCAAAGCATGACACAGCAGAATTTA
CAAAGTTTCAACAGAGTCATTTTGGGCAGTATGCACCGCTCCTATTGGAT
TGCTTTGAAATGATGCTTCTTGTTCCCTGTGGGTTGCACATGATTCTTGC
ACACCACAGATATTTGTGGAACTTCTTGTTTGATATCATTCAAGATAGAA
AACAACAAGATTTACTTCCCAAGGCTTTACGCAGCATAAATTGTCACTTT
TTGGCTCTTCAAATCGAATCATATTTCAAAAGGTTAAGTTCTTTCTCATT
atcttttaaattattttaatgttATTATAGTTCAGGGAGATTAAACGCAG
TGAGCCTTTCAAAGTAATTTCCCTGTAGGATCAACAGAGTTAGGAAATAG
ACTTGTCACagattttgaatttctattttcaGTAAAAAGAAGTACTATGA
CGGTAACTCATCTTTGAAAATGATTGGGAGAGACTGCAAAAACTTCGAAG
ACAATATTGGAAAGTTTATTAGCTTTTTCATCAAAGAAAATGAGGCATTA
AATGATAAGAGCTTTTCTAAAATGAGGCAAGTAATGAAGCTGTATGAGTT
ATTCAGAGATTTGGCAAGAGATATCAGAGCAACAACAGTAGATTTGGAAC
GTATTGACACTTTCCAAGAAAGAGTTGAagtcttttttcaaacattcaaa
cGCTTTTCTCTTGGACGGTCAACAGGCAGGAAACCCTATCTGCACATATT
GCGCGACCACATTGCGGACTTTATGAAATTCTGGTCTGTACTCGGATTTG
GTTATGGATGCTTTAACTGCAACGCTGGTGAGCATttaaacaagcaaata
aaaacgATGGAGCTTAATAACACAAACTTGGACAAGGacagattttttac
aatcaCACGACTTTTTCGTTGGAAACAATTTTACTATCCGGAAAGTATAT
ATCAGCCTAGCTGCAAAGTCCGTTGTTCAAGGTGCCAACAAAAAGGtcac
aacaaaaaaaacaagagcTGCCCAATGCATCCTGACCAGCCAATAATGCA
CTTTTCAGATTCTGATCCTGACGATTAAATTAACAAGACAATGATCCTGG
gtttataccttaagggaaaaaattttcgcgggaagaaaatttcgcggttt
tcacggtttttgcctaaaaccgcgaaattaagttcccgcgaaactttctg
aaatcgccaatccgcgaaattaaattcctgcgaaattttacaaattcgat
gaaccgcgaaattaaattactgctaaatttttcaaaaaag Run BLAST on NCBI transcript from alignment at sc0000188:371553..373444+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014489 ID=TCONS_00014489|Name=TCONS_00014489|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at sc0000188:371553..373444+ (Clytia hemisphaerica)
TATAAGTACAAGTCATTTGCgatgcaataaaaaatataattgtcCTACGT
TAagttctttttgtattttgaatgttttgttaaaagtaattaaatcaaat
taaattagGGTGCAGTTCACCCTACAGCTAGTGGCTTAACGATTGAATTT
GAAAACAACAAAGaacatttcaatattttgccaatCATGTGTGCAGATCT
TTGCTTTGTAAAGGAGGTTCTAGGCAAGTGTTCCTGCACCAGTCTATATG
GCTGCTTTTATTGTAAAAAACCGATTGCAGAATGGGATAAAAATGATGCA
CAGACAGAAGAACTACAAACAATGTCGCAAATATCACTGGATGGTCAAGA
AGCAGTTAGGGTACTTGGTGCGAATCCAAAGCATGACACAGCAGAATTTA
CAAAGTTTCAACAGAGTCATTTTGGGCAGTATGTAAGTAAACTTAACAGT
ATTATGAGTAAGAGAATCTAATTGATGTACTTTTAAAAATATGCAACCAA
GTTCAATATTACAGCATtttatttaaaactttaaattttacaCAAATGGA
AAAATATACTATACTGTGCAGGTGACAAATGTTGTCCCTTTCTTATGGAA
ATAACCCAAATGGTAGTGGTTTTTATTACCATttttattaagaatttttt
tttaatttttaaaatttacaattttttattaTAGGCACCGCTCCTATTGG
ATTGCTTTGAAATGATGCTTCTTGTTCCCTGTGGGTTGCACATGATTCTT
GCACACCACAGATATTTGTGGAACTTCTTGTTTGATATCATTCAAGATAG
AAAACAACAAGATTTACTTCCCAAGGCTTTACGCAGCATAAATTGTCACT
TTTTGGCTCTTCAAATCGAATCATATTTCAAAAGGTTAAGTTCTTTCTCA
TTatcttttaaattattttaatgttATTATAGTTCAGGGAGATTAAACGC
AGTGAGCCTTTCAAAGTAATTTCCCTGTAGGATCAACAGAGTTAGGAAAT
AGACTTGTCACagattttgaatttctattttcaGTAAAAAGAAGTACTAT
GACGGTAACTCATCTTTGAAAATGATTGGGAGAGACTGCAAAAACTTCGA
AGACAATATTGGAAAGTTTATTAGCTTTTTCATCAAAGAAAATGAGGCAT
TAAATGATAAGAGCTTTTCTAAAATGAGGCAAGTAATGAAGCTGTATGAG
TTATTCAGAGATTTGGCAAGAGATATCAGAGCAACAACAGTAGATTTGGA
ACGTATTGACACTTTCCAAGAAAGAGTTGAagtcttttttcaaacattca
aacGCTTTTCTCTTGGACGGTCAACAGGCAGGAAACCCTATCTGCACATA
TTGCGCGACCACATTGCGGACTTTATGAAATTCTGGTCTGTACTCGGATT
TGGTTATGGATGCTTTAACTGCAACGCTGGTGAGCATttaaacaagcaaa
taaaaacgATGGAGCTTAATAACACAAACTTGGACAAGGacagatttttt
acaatcaCACGACTTTTTCGTTGGAAACAATTTTACTATCCGGAAAGTAT
ATATCAGCCTAGCTGCAAAGTCCGTTGTTCAAGGTGCCAACAAAAAGGtc
acaacaaaaaaaacaagagcTGCCCAATGCATCCTGACCAGCCAATAATG
CACTTTTCAGATTCTGATCCTGACGATTAAATTAACAAGACAATGATCCT
GGgtttataccttaagggaaaaaattttcgcgggaagaaaatttcgcggt
tttcacggtttttgcctaaaaccgcgaaattaagttcccgcgaaactttc
tgaaatcgccaatccgcgaaattaaattcctgcgaaattttacaaattcg
atgaaccgcgaaattaaattactgctaaatttttcaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014489-exon-sc0000188-1491911889:371553..371984 | TCONS_00014489-exon-sc0000188-1491911889:371553..371984 | Clytia hemisphaerica | exon |
| TCONS_00014489-exon-sc0000188-1510915933:371553..371984 | TCONS_00014489-exon-sc0000188-1510915933:371553..371984 | Clytia hemisphaerica | exon |
| TCONS_00014489-exon-sc0000188-1575043694:371553..371984 | TCONS_00014489-exon-sc0000188-1575043694:371553..371984 | Clytia hemisphaerica | exon |
| TCONS_00014489-exon-sc0000188-1491911889:372237..373444 | TCONS_00014489-exon-sc0000188-1491911889:372237..373444 | Clytia hemisphaerica | exon |
| TCONS_00014489-exon-sc0000188-1510915933:372237..373444 | TCONS_00014489-exon-sc0000188-1510915933:372237..373444 | Clytia hemisphaerica | exon |
| TCONS_00014489-exon-sc0000188-1575043694:372237..373444 | TCONS_00014489-exon-sc0000188-1575043694:372237..373444 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188 | supercontig | sc0000188:371553..373444 + |
Blast
The following BLAST results are available for this feature:
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