TCONS_00014492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014492
Unique NameTCONS_00014492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014492 ID=TCONS_00014492|Name=TCONS_00014492|organism=Clytia hemisphaerica|type=transcript|length=305bp
CCAGGTCCAGGATATTGAGGAGGATGCTGTATCAGAGAATGATGAAAGTA
AACTTGATTTGTGTTTGGATCGCATTGAAAATCAACTGATAGAGAGGTGT
ATTTATGCTtcaaaaagaaatgaaacaCTTACAATGAATATTGAGGATAT
CCCCCTTCTTATACCATCATTACAAAGTAAGCATGAACTGAATAcagaga
tgaaaaaaaaaagctgCTATCTGAAAGATACTGATAAAATTGAAGGAGAT
GCaatgattctatcaaaagtcatCAACGAAGGGAGATTTTAAATGGAAAA
TATAG
Run BLAST on NCBI

transcript from alignment at sc0000188:469394..469930+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014492 ID=TCONS_00014492|Name=TCONS_00014492|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at sc0000188:469394..469930+ (Clytia hemisphaerica)
CCAGGTCCAGGATATTGAGGAGGATGCTGTATCAGAGAATGATGAAAGTA
AACTTGATTTGTGTTTGGATCGCATTGAAAATCAACTGATAGAGAGGTGT
ATTTATGCTtcaaaaagaaatgaaacaCTTACAATGAATATTGAGGATAT
CCCCCTTCTTATACCATCATTACAAAGTAAGCATGAACTGAATAcagaga
tgaaaaaaaaaagctgCTATCTGAAAGATACTGATAAAATTGAAGGTAAT
ACTACATACAAAAATCTGNTCTTATACCATCATTACAAAGGAAGCAGGAA
CTGAATACAGAGATGAAAAAAAAAGCTGCTATCTGAAAGATACTGATAAA
ATTGAAGGTAACacatacaaaaatctgctttttgaaaattatatcttGCA
TTTTTATTTGGGTTTTTGTAGCCTAGGTTTGTAAAGTTGTttctataatt
ttttatttatttttttattatctaaAGGAGATGCaatgattctatcaaaa
gtcatCAACGAAGGGAGATTTTAAATGGAAAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008106XLOC_008106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014492-exon-sc0000188-1491911889:469394..469638TCONS_00014492-exon-sc0000188-1491911889:469394..469638Clytia hemisphaericaexon
TCONS_00014492-exon-sc0000188-1510915933:469394..469638TCONS_00014492-exon-sc0000188-1510915933:469394..469638Clytia hemisphaericaexon
TCONS_00014492-exon-sc0000188-1575043694:469394..469638TCONS_00014492-exon-sc0000188-1575043694:469394..469638Clytia hemisphaericaexon
TCONS_00014492-exon-sc0000188-1491911889:469871..469930TCONS_00014492-exon-sc0000188-1491911889:469871..469930Clytia hemisphaericaexon
TCONS_00014492-exon-sc0000188-1510915933:469871..469930TCONS_00014492-exon-sc0000188-1510915933:469871..469930Clytia hemisphaericaexon
TCONS_00014492-exon-sc0000188-1575043694:469871..469930TCONS_00014492-exon-sc0000188-1575043694:469871..469930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:469394..469930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.17482	0	0	11.248	10.2313	7.88099	8.88918	5.02756	3.68529	6.71745	5.22768	2.99699	0.975909	0.258895	0.225022	0.277209	0.36096	0	1.09788	0.855347	2.30874	0	1.53307	4.36115	6.72293	0.921164	0	0.474098	0.1247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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