TCONS_00014505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014505
Unique NameTCONS_00014505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014505 ID=TCONS_00014505|Name=TCONS_00014505|organism=Clytia hemisphaerica|type=transcript|length=1336bp
TCCTGATGTGAAAGAGAAAGCAAAGATCTTgatattatcaaaaaaaggaT
TTGCGCGAATGAGGAGGGATTGTTTTCTCAAAATCACGTTGATCTAGTTG
TCGCTGTGTTGAAAGCTTGTAGACTTTTCGAAATATTGACGAACCCAAGA
ACAAGATTTATACAAAAACAACATAATGTAGCTCCATATAATAAATAGCT
TTTGAAATACAATGGCAAAATCAAGTCTAAATAACAGTAATACAAGAAGA
GCCAGGACGTTGACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTTTGT
AGCCGATGGTTGTTGCTATAGTAACAATCTAAGTAACGTGAAAAACAGCG
TACGAACGAAGAAAATTACTGCAAGAAATTATCACCAGTACGTTTTAGAG
ACATTTTATGAAGAAAGGACGACAGTATGGCACCAAGAGCCTTACGTGGA
TCAAACGATAGACGGGATGGAGAATGGTTGTCCGACGCATCCGTGGAATA
TCCCTGTTTCAATGCCCTCTGTGTTTCAACCAAATCAACTATCCATTGAA
GTCCCTCATACTGCTTTCATCAAGGTACTCAACCAATGTTTAACCAATCG
AATCGAAGTGGTCTATAATATTCTAGAACGATCAGATAAACGGTCAAATG
ATTACATGCTTAGTCGACTTTCCACCTACATCCGTCAGCTTCCGACTACT
AATTTGTGATGTAATTTAATCTCACAGACGAAAGTCGAATATCATATTAT
CTTTCCCGAAATACATTTAGTTTCGAGAATATTAACCTCAAAGGTCATAC
TGTCTTCAAACTATTCAGTTTTATTTCTTTTACGACACGACAGGATTGTT
CGACATGTCGACGCAACGGAAGTCGAAAGTGTTCTTCGTGTCAAGGATGT
GGCAAGATCAAATGTGGAGTATGTGATGGACTTGGAGTTCTCCAACTGTT
TTCACCAGATGAACTGACATTCGAAAATAGCACCTCCATAACAAACCGCT
CATGTCCTCACTGTAACGGTGGAAACAGAGAGTGCAAGAAATGTCAAGGC
AATGgaaaaatcatttgttttgtCTGCCAAGGTCATGGTGCTTTGAAAGT
ATCCACTCGATTAATTGTGAAGTGGAAGCTGATGAAAGACGAGCGAATCA
TAGAACGATCACACATTCCCAAACAACTATTCAAAGAAATCTCTGGCACG
TCCGTCTTCCAAGAACAAAACGATCGAGTCTATCCTTTGCTCGATTTCCC
TGAGAATGGAATCAACGATTTATCAGCCAAATTGATCAAAGGACACAACG
AACAGCTAAAACATGCCAAAATCCGAATGCAGGTAC
Run BLAST on NCBI

transcript from alignment at sc0000188:149899..151841-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014505 ID=TCONS_00014505|Name=TCONS_00014505|organism=Clytia hemisphaerica|type=transcript|length=1943bp|location=Sequence derived from alignment at sc0000188:149899..151841- (Clytia hemisphaerica)
TCCTGATGTGAAAGAGAAAGCAAAGATCTTGATATTATCAAAAAAAGGAT
TTGCGCGAATGAGGAGGGATTGTTTTCTCAAAATCACGTTGATCTAGTTG
TCGCTGTGTTGAAAGCTTGTAGACTTTTCGAAATATTGACGAACCCAAGA
ACAAGATTTATACAAAAACAACATAATGTAGCTCCATATAATAAATAGCT
TTTGAAATACAATGGCAAAATCAAGTCTAAATAACAGTAATACAAGAAGA
GCCAGGTAAGTACACTACTGTGCAGTAAAGGTTTTTTCTAAGTGATCAAT
ATACGTTAGGTAGATAATTTTTCGAATTTTTTTGAATTCTTCAGGACGTT
GACAGAGGAGGATGCAGCAGAAGCTTTCGCAGATTTTGTAGCCGATGGTT
GTTGCTATAGTAACAATCTAAGTAACGTGAAAAACAGCGTACGAACGAAG
AAAATTACTGCAAGAAATTATCACCAGGTGAAATGTTCACTACCCTTCTC
ACTTTTCACTTTGTTTAAAAATGCTTTTACGAATATACGGGACCAGACAG
CTTTTTCTATGGTTAAGAGCGAATCTATGTTTTTGTCTATTGATCATATT
GTTGATGTTACAAGTGGGACGAAGACTACAAACTACTATTACTAACCGTC
AAAAACCTTTGCCAAATCAACAAGTTATCAAACAAGCTCTTCCCTCATTC
TCAGTACGTTTTAGAGACATTTTATGAAGAAAGGACGACAGTATGGCACC
AAGAGCCTTACGTGGATCAAACGATAGACGGGATGGAGAATGGTTGTCCG
ACGCATCCGTGGAATATCCCTGTTTCAATGCCCTCTGTGTTTCAACCAAA
TCAACTATCCATTGAAGTCCCTCATACTGCTTTCATCAAGGTACTCAACC
AATGTTTAACCAATCGAATCGAAGTGGTCTATAATATTCTAGAACGATCA
GATAAACGGTCAAATGATTACATGCTTAGTCGACTTTCCACCTACATCCG
TCAGCTTCCGACTACTAATTTGTGATGTAATTTAATCTCACAGACGAAAG
TCGAATATCATATTATCTTTCCCGAAATACATTTAGTTTCGAGAATATTA
ACCTCAAAGGTCATACTGTCTTCAAACTATTCAGTTTTATTTCTTTTACG
ACACGACAGGATTGTTCGACATGTCGACGCAACGGAAGTCGAAAGTGTTC
TTCGTGTCAAGGATGTGGCAAGGTAAGACCGTTGCAAACAGTAAACTAGT
AAACACAACAAAAAATGGCTCAAAACGAACAAATACGAGATCTTTATACC
ATCAAAGAACCATGAAAATAATCAAAGTAGCGTCGATTTCTTATAATCTC
AGTATATAGGCAGTAAAAATTAATTTCATTCAATTCAGATCAAATGTGGA
GTATGTGATGGACTTGGAGTTCTCCAACTGTTTTCACCAGATGAACTGAC
ATTCGAAAATAGCACCTCCATAACAAACCGCTCATGTCCTCACTGTAACG
GTGGAAACAGAGAGTGCAAGAAATGTCAAGGCAATGGAAAAATCATTTGT
TTTGTCTGCCAAGGTCATGGTGCTTTGAAAGTATCCACTCGATTAATTGT
GAAGTGGTAAGTATTGTCATTCATTCTCGTTTCTTATTTAAAAAGATATT
ATGTCGAATACCTCCAACCAAAGACTTTGATTTTAAATTCGACAGGGACT
ATTTAATCACAAGTAATAAAAACCTTGACAGGAAGCTGATGAAAGACGAG
CGAATCATAGAACGATCACACATTCCCAAACAACTATTCAAAGAAATCTC
TGGCACGTCCGTCTTCCAAGAACAAAACGATCGAGTCTATCCTTTGCTCG
ATTTCCCTGAGAATGGAATCAACGATTTATCAGCCAAATTGATCAAAGGA
CACAACGAACAGCTAAAACATGCCAAAATCCGAATGCAGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008112XLOC_008112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014505-exon-sc0000188-1575043694:151587..151841TCONS_00014505-exon-sc0000188-1575043694:151587..151841Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1575043694:151365..151497TCONS_00014505-exon-sc0000188-1575043694:151365..151497Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1575043694:150620..151137TCONS_00014505-exon-sc0000188-1575043694:150620..151137Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1575043694:150236..150453TCONS_00014505-exon-sc0000188-1575043694:150236..150453Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1575043694:149899..150110TCONS_00014505-exon-sc0000188-1575043694:149899..150110Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1510915933:151587..151841TCONS_00014505-exon-sc0000188-1510915933:151587..151841Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1510915933:151365..151497TCONS_00014505-exon-sc0000188-1510915933:151365..151497Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1510915933:150620..151137TCONS_00014505-exon-sc0000188-1510915933:150620..151137Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1510915933:150236..150453TCONS_00014505-exon-sc0000188-1510915933:150236..150453Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1510915933:149899..150110TCONS_00014505-exon-sc0000188-1510915933:149899..150110Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1491911889:151587..151841TCONS_00014505-exon-sc0000188-1491911889:151587..151841Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1491911889:151365..151497TCONS_00014505-exon-sc0000188-1491911889:151365..151497Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1491911889:150620..151137TCONS_00014505-exon-sc0000188-1491911889:150620..151137Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1491911889:150236..150453TCONS_00014505-exon-sc0000188-1491911889:150236..150453Clytia hemisphaericaexon
TCONS_00014505-exon-sc0000188-1491911889:149899..150110TCONS_00014505-exon-sc0000188-1491911889:149899..150110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:149899..151841 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.74115	0.622303	0.164782	0.597204	0.00124133	0	0	0	0	7.71074e-05	0	0	0.494998	0	0	0	0	0.211424	0	0	0	2.71133e-07	0	0
Blast
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BLAST of TCONS_00014505 vs. Swiss-Prot (Human)
Match: SSUH2 (Protein SSUH2 homolog OS=Homo sapiens GN=SSUH2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.014e-16
Identity = 52/183 (28.42%), Postives = 83/183 (45.36%), Query Frame = 1 
Query:  778 NINLKGHTVF----KLFSFISFTTRQDCSTCRRNGSRKCSSCQGCGKIKCGVCDGLGVLQLFSPDELTFENSTSITNRSCPHCNG-GNRECKKCQGNGKIICFVCQGHGALKVSTRLIVKWKLMKDERIIE-RSHIPKQLFKEISGTSVFQEQNDRVYPLLDFPENGINDLSAKLIKGHNEQL 1308
            +I ++G  +F    + F     +  ++C  C   G  KCS C G G ++C  C G                  +  +R C  C G G R C  C G G   C  C+G   L    +L++ WK    E + E R + P++L  +  G ++F+++N  VYP++DFP   I+  S + I  H+  L
Sbjct:  128 DIKVQGPPMFQEDTRKFQVPHSSLVKECHKCHGRGRYKCSGCHGAGTVRCPSCCG--------------AKRKAKQSRRCQLCAGSGRRRCSTCSGRGNKTCATCKGEKKLLHFIQLVIMWKNSLFEFVSEHRLNCPRELLAKAKGENLFKDENSVVYPIVDFPLRDISLASQRGIAEHSAAL 296
The following BLAST results are available for this feature:
BLAST of TCONS_00014505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSUH25.014e-1628.42Protein SSUH2 homolog OS=Homo sapiens GN=SSUH2 PE=... [more]
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