TCONS_00014514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014514
Unique NameTCONS_00014514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014514 ID=TCONS_00014514|Name=TCONS_00014514|organism=Clytia hemisphaerica|type=transcript|length=913bp
CTGAATTTTAGTTTCGGACGGAGGAAAATAAATGTCTCTattcttgcaaa
aaaaaacatgacagAACGTTGATTTATATGGAAACgcaattaattcaaga
aattatcTAAAGATGAGTTAGGTTTGTCCTGTTTAAATtgaacttttaaa
aatcttccgTCCGACACTAAAGTAAGAaaataaatagagctttttaaaaa
tgaatgttAACTCGAACTTTAGttcaatctttaaagaaaaacaaaatcat
cGTAAATAAATGCCAAGGAACATCATAAATAACTTCATAAAATACAGTTT
TGAAGGCTGCAGTTTCGTTCGTTAGGATAAGAATATTAACCTTTTTCCGT
CCaacactaaaataaaaagacaagTTATTATCTAGTTTTGACGGATAAAA
ACAATTCATCCAAGTCCACCTTAAAACTGAAACCAATTTTTGCAGGATGG
ACATTCTAACCAATCCGTAGTGTTATCTGAATGATAGGAAGCAAAACACT
TTGCGCATTGATTCTCTTCAACTGTAGTCGAAACGTTGTGGTCACAGATC
AAGCCACCAGCCTTGCTGTACCATTGAGTGTAATACGGCTCCTCATCAGC
AGCAGTTTTGTAAAATGCAATTGAGGAATCACCACGTTGGTTGACTGACC
TCTCAAAATTGTGAATCTTTAGGGTTTCGGGGATGGGAGAAGCGGCTTCT
ATACCTTCCGGCTCCGTTATTTTTGACTCACTCGGCATGTAGACAGTGAT
CACAGATGGAACAAACTCCGAGGCAGCTTCGGCAAATTCTTTCGGGTTGT
AAATCACAGCCTTGTTTGATTTCACCTTCCGAAAAACGACATTTTTTAAC
GTACCTCCAACCCCATCCATCGGTCCTTTTCcgtgaaaaatctttttgtc
atCTAATCCTGCA
Run BLAST on NCBI

protein sequence of TCONS_00014514-protein

>TCONS_00014514-protein ID=TCONS_00014514-protein|Name=TCONS_00014514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
AGLDDKKIFHGKGPMDGVGGTLKNVVFRKVKSNKAVIYNPKEFAEAASEF
VPSVITVYMPSESKITEPEGIEAASPIPETLKIHNFERSVNQRGDSSIAF
YKTAADEEPYYTQWYSKAGGLICDHNVSTTVEENQCAKCFASYHSDNTTD
WLECPSCKNWFQF
Run BLAST on NCBI

transcript from alignment at sc0000188:60192..61104

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014514 ID=TCONS_00014514|Name=TCONS_00014514|organism=Clytia hemisphaerica|type=transcript|length=913bp|location=Sequence derived from alignment at sc0000188:60192..61104 (Clytia hemisphaerica)
TGCAGGATTAGatgacaaaaagatttttcacgGAAAAGGACCGATGGATG
GGGTTGGAGGTACGTTAAAAAATGTCGTTTTTCGGAAGGTGAAATCAAAC
AAGGCTGTGATTTACAACCCGAAAGAATTTGCCGAAGCTGCCTCGGAGTT
TGTTCCATCTGTGATCACTGTCTACATGCCGAGTGAGTCAAAAATAACGG
AGCCGGAAGGTATAGAAGCCGCTTCTCCCATCCCCGAAACCCTAAAGATT
CACAATTTTGAGAGGTCAGTCAACCAACGTGGTGATTCCTCAATTGCATT
TTACAAAACTGCTGCTGATGAGGAGCCGTATTACACTCAATGGTACAGCA
AGGCTGGTGGCTTGATCTGTGACCACAACGTTTCGACTACAGTTGAAGAG
AATCAATGCGCAAAGTGTTTTGCTTCCTATCATTCAGATAACACTACGGA
TTGGTTAGAATGTCCATCCTGCAAAAATTGGTTTCAGTTTTAAGGTGGAC
TTGGATGAATTGTTTTTATCCGTCAAAACTAGATAATAActtgtcttttt
attttagtgttGGACGGAAAAAGGTTAATATTCTTATCCTAACGAACGAA
ACTGCAGCCTTCAAAACTGTATTTTATGAAGTTATTTATGATGTTCCTTG
GCATTTATTTACgatgattttgtttttctttaaagattgaaCTAAAGTTC
GAGTTaacattcatttttaaaaagctctatttatttTCTTACTTTAGTGT
CGGAcggaagatttttaaaagttcaATTTAAACAGGACAAACCTAACTCA
TCTTTAgataatttcttgaattaattgcGTTTCCATATAAATCAACGTTc
tgtcatgtttttttttgcaagaatAGAGACATTTATTTTCCTCCGTCCGA
AACTAAAATTCAG

Coding sequence (CDS) from alignment at sc0000188:60192..61104

>TCONS_00014514 ID=TCONS_00014514|Name=TCONS_00014514|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0000188:60192..61104 (Clytia hemisphaerica)
GCAGGATTAGatgacaaaaagatttttcacgGAAAAGGACCGATGGATGG
GGTTGGAGGTACGTTAAAAAATGTCGTTTTTCGGAAGGTGAAATCAAACA
AGGCTGTGATTTACAACCCGAAAGAATTTGCCGAAGCTGCCTCGGAGTTT
GTTCCATCTGTGATCACTGTCTACATGCCGAGTGAGTCAAAAATAACGGA
GCCGGAAGGTATAGAAGCCGCTTCTCCCATCCCCGAAACCCTAAAGATTC
ACAATTTTGAGAGGTCAGTCAACCAACGTGGTGATTCCTCAATTGCATTT
TACAAAACTGCTGCTGATGAGGAGCCGTATTACACTCAATGGTACAGCAA
GGCTGGTGGCTTGATCTGTGACCACAACGTTTCGACTACAGTTGAAGAGA
ATCAATGCGCAAAGTGTTTTGCTTCCTATCATTCAGATAACACTACGGAT
TGGTTAGAATGTCCATCCTGCAAAAATTGGTTTCAGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008120XLOC_008120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014514-proteinTCONS_00014514-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014514-exon-sc0000188-1491911889:60192..61104TCONS_00014514-exon-sc0000188-1491911889:60192..61104Clytia hemisphaericaexon
TCONS_00014514-exon-sc0000188-1510915933:60192..61104TCONS_00014514-exon-sc0000188-1510915933:60192..61104Clytia hemisphaericaexon
TCONS_00014514-exon-sc0000188-1575043694:60192..61104TCONS_00014514-exon-sc0000188-1575043694:60192..61104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:60192..61104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100789	0.0982852	0.171178	0.111647	0	0.161108	0.323951	0.0606557	0	0.0526016	0.0510564	0.0335625	0	0	0.0286157	0.092127	0	0.116327	0	0	0.0974486	0	0.0577814	0.105063	0.270532	0.193155	0.207303	0.0737463	0.055934	0.0569879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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