|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014516 ID=TCONS_00014516|Name=TCONS_00014516|organism=Clytia hemisphaerica|type=transcript|length=1866bp
ttgtattttggcgcgaaaactgttaaaatcttttacaaagctatgggcca
cccggtggcccgtgcgtcatataggaacacgattcatgggccacccagtg
gccagtgcgtcatataggaacacgattcatgggccacccagtggcccgtg
cgtgcGGAAAGGGTCAAATGTTAAATAAAAATGTGACATTCCTACATTTC
ATACAACCAAAAATCTGGAAGTGTTACACtaagaggataaatactaaAGG
CTTTTTAGTGGGGCATTTGAGATGGTTGTGATAGTTGTAATGTCAGGATT
ATTCCATATTTTTGATTAGCTGAAttgatgcaaaaaatcattctgaaaaa
aattaatcgataATTATCGGTTGAAAATTAAATGTCTTTCTCTTCCGAAG
TTGATGTTGTTTTTGGGTGGAACGTGCAGCAGACTGTTTGTCTATTGTAG
CTGACTCGTCTTCTTTCTCTTTGTCGTCTGTTTGTTCTCCATTATCTTGT
TGAACTCCCGCTGATGCCCTGTCTTCATACACTAATCTCTGGTCACAATA
TTTCTTCTGTTACTGTTTGTAGGTTTGAATGTTGCGGGTGAGTTgagaaa
taattttctttttctgtctGTGTAATGGCTGTTCGAAAGGTTTATAGCTC
TATTTTAACAAGCAAGTTAAGGTTAATATTGACGCTCTTGTATCACAATT
TTCCATGTTAATGacatcaaaaagttaagagggAATTGCTACTCACAGTG
CAATCagtagaaattcaaattttcagtaaaaattaGATGGGCTGTTATTA
TGGTAAAACTATTCATAAAATCGATAATCACATTCTTGCTAAAAGCCTTT
TGTATAAACAACAGCAACATTGGTCACCTTTTGACTACCTCAGCTTGGAA
TATAGAATTTTGTAGTACTGAATTTATACAAAAAACTGTCGAATTTGTAA
ATATAAATTACCAAatgaataaaatattaaaaataaaaatgataataatt
aaaacacaaaacaaaataaaacaagaaagaactgaaaaaatactaaaaag
aactgaaaagaaaagaaataaaatggaaaaaattaaaatgaaaaagaaac
aaaaaaaaggagataataaaacaaaaaaaagaccatggattaaaaaaaaa
acatgaataaatgagaaaaatattttcctggtcaaattattttattataa
aTAGTACAGTTATACCCTTTTTTACAGCTACTGAAttgtaaacattttga
aaaatgaaaatagattTTCGTATACGGAAAATAGATAGTTAACCATAGGT
AGGTGGAGTGAGATAtaatttcaaaagactttttggcATGATATGTATTA
AATCTGTGTGGTTTGGAATGTTTATGAAATATATACTACTTGTGTAAACT
ATCTCATTTGCCACATTTGGAAAGGGGAGATTAATTTGAATTCGAATTAT
CACAACTTGGAAACTACCCAATCAATGTAAAGCAGAATGCCATTATTACA
CTGATCGCGTAAACCTGAAAAGCTACTATTCGTCGTTACATTTTTGAATC
AGACAAAGATTGCAAAGAAACGAAAATAGCATAATCAATATGAAAAACTT
ACGTACCTATTGCATCACGCACAAAATGATCCTTTTTTCTTACTTACTTA
CTGCATATATCAACTCAACTCGAATCGATTTGACTTTGATGAATTACTGG
CATAACGGAAACTTGCATCGTAATACATATATTAAAGCACAAACAGTACC
TTGTTTTCTTGCTTAGCAGATATAATATGTGTCTTGAATAACTTTATTCC
CTGCCAATGAGGTAGCTTCATTATTGTTACTGGTTTTGACTGGATGCTGG
TGTAGGAGAATTTGCT Run BLAST on NCBI protein sequence of TCONS_00014516-protein >TCONS_00014516-protein ID=TCONS_00014516-protein|Name=TCONS_00014516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MVKLFIKSIITFLLKAFCINNSNIGHLLTTSAWNIEFCSTEFIQKTVEFV
NINYQMNKILKIKMIIIKTQNKIKQERTEKILKRTEKKRNKMEKIKMKKK
QKKGDNKTKKRPWIKKKT Run BLAST on NCBI transcript from alignment at sc0000188:65004..66869 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014516 ID=TCONS_00014516|Name=TCONS_00014516|organism=Clytia hemisphaerica|type=transcript|length=1866bp|location=Sequence derived from alignment at sc0000188:65004..66869 (Clytia hemisphaerica)
AGCAAATTCTCCTACACCAGCATCCAGTCAAAACCAGTAACAATAATGAA
GCTACCTCATTGGCAGGGAATAAAGTTATTCAAGACACATATTATATCTG
CTAAGCAAGAAAACAAGGTACTGTTTGTGCTTTAATATATGTATTACGAT
GCAAGTTTCCGTTATGCCAGTAATTCATCAAAGTCAAATCGATTCGAGTT
GAGTTGATATATGCAGTAAGTAAGTAAGAAAAAAGGATCATTTTGTGCGT
GATGCAATAGGTACGTAAGTTTTTCATATTGATTATGCTATTTTCGTTTC
TTTGCAATCTTTGTCTGATTCAAAAATGTAACGACGAATAGTAGCTTTTC
AGGTTTACGCGATCAGTGTAATAATGGCATTCTGCTTTACATTGATTGGG
TAGTTTCCAAGTTGTGATAATTCGAATTCAAATTAATCTCCCCTTTCCAA
ATGTGGCAAATGAGATAGTTTACACAAGTAGTATATATTTCATAAACATT
CCAAACCACACAGATTTAATACATATCATgccaaaaagtcttttgaaatt
aTATCTCACTCCACCTACCTATGGTTAACTATCTATTTTCCGTATACGAA
aatctattttcatttttcaaaatgtttacaaTTCAGTAGCTGTAAAAAAG
GGTATAACTGTACTAtttataataaaataatttgaccaggaaaatatttt
tctcatttattcatgttttttttttaatccatggtcttttttttgtttta
ttatctccttttttttgtttctttttcattttaattttttccattttatt
tcttttcttttcagttctttttagtattttttcagttctttcttgtttta
ttttgttttgtgttttaattattatcatttttatttttaatattttattc
atTTGGTAATTTATATTTACAAATTCGACAGTTTTTTGTATAAATTCAGT
ACTACAAAATTCTATATTCCAAGCTGAGGTAGTCAAAAGGTGACCAATGT
TGCTGTTGTTTATACAAAAGGCTTTTAGCAAGAATGTGATTATCGATTTT
ATGAATAGTTTTACCATAATAACAGCCCATCtaatttttactgaaaattt
gaatttctactGATTGCACTGTGAGTAGCAATTccctcttaactttttga
tgtCATTAACATGGAAAATTGTGATACAAGAGCGTCAATATTAACCTTAA
CTTGCTTGTTAAAATAGAGCTATAAACCTTTCGAACAGCCATTACACaga
cagaaaaagaaaattatttctcAACTCACCCGCAACATTCAAACCTACAA
ACAGTAACAGAAGAAATATTGTGACCAGAGATTAGTGTATGAAGACAGGG
CATCAGCGGGAGTTCAACAAGATAATGGAGAACAAACAGACGACAAAGAG
AAAGAAGACGAGTCAGCTACAATAGACAAACAGTCTGCTGCACGTTCCAC
CCAAAAACAACATCAACTTCGGAAGAGAAAGACATTTAATTTTCAACCGA
TAATtatcgattaatttttttcagaatgattttttgcatcaaTTCAGCTA
ATCAAAAATATGGAATAATCCTGACATTACAACTATCACAACCATCTCAA
ATGCCCCACTAAAAAGCCTttagtatttatcctcttaGTGTAACACTTCC
AGATTTTTGGTTGTATGAAATGTAGGAATGTCACATTTTTATTTAACATT
TGACCCTTTCCgcacgcacgggccactgggtggcccatgaatcgtgttcc
tatatgacgcactggccactgggtggcccatgaatcgtgttcctatatga
cgcacgggccaccgggtggcccatagctttgtaaaagattttaacagttt
tcgcgccaaaatacaa Coding sequence (CDS) from alignment at sc0000188:65004..66869 >TCONS_00014516 ID=TCONS_00014516|Name=TCONS_00014516|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000188:65004..66869 (Clytia hemisphaerica)
tcatgttttttttttaatccatggtcttttttttgttttattatctcctt
ttttttgtttctttttcattttaattttttccattttatttcttttcttt
tcagttctttttagtattttttcagttctttcttgttttattttgttttg
tgttttaattattatcatttttatttttaatattttattcatTTGGTAAT
TTATATTTACAAATTCGACAGTTTTTTGTATAAATTCAGTACTACAAAAT
TCTATATTCCAAGCTGAGGTAGTCAAAAGGTGACCAATGTTGCTGTTGTT
TATACAAAAGGCTTTTAGCAAGAATGTGATTATCGATTTTATGAATAGTT
TTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014516-exon-sc0000188-1491911889:65004..66869 | TCONS_00014516-exon-sc0000188-1491911889:65004..66869 | Clytia hemisphaerica | exon |
| TCONS_00014516-exon-sc0000188-1510915933:65004..66869 | TCONS_00014516-exon-sc0000188-1510915933:65004..66869 | Clytia hemisphaerica | exon |
| TCONS_00014516-exon-sc0000188-1575043694:65004..66869 | TCONS_00014516-exon-sc0000188-1575043694:65004..66869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188 | supercontig | sc0000188:65004..66869 . |
Blast
The following BLAST results are available for this feature:
|
