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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014527 ID=TCONS_00014527|Name=TCONS_00014527|organism=Clytia hemisphaerica|type=transcript|length=1184bp
TTTATGTCATGAGGATGACAGAGGGGAGTtttaaaaatgaccaaatcgTG
TGTTTATAGTGTCTACAAAGAATCCTGGCACTCAACTCAAAATCGTTTAG
AAAAGTCCAGAGGAGAAAATTGCATTGACATGAAAAAATCGAATAACGat
ctggaaaaaatgaaaacatcgaagaagaaaaatgaagaaatgaaaGAACT
AAATAAATTTACAcgacttaaaaaaataaaatcttgaaaaaaatccCGAA
AATAAGTTCAACGAAAAGACCATAAAAGTtcgatgttttgaaatttaaaa
ttataataaaaagagCGAAGTAGCCTTTCCGTTGAACTATTTATTTAGAA
TCCATCCAAGCAAAATTTTGCTCTGGCGAGAAAATAACAATCAAAAGACG
GCCCTACTACCAATCCTATGATGCCCATCTTAATTACCGTAGTAACCGTG
ATGATGGTCATTATAGGAATGGTGGTAGGAGCTATCACCCCATCCATCAT
GATCCTTACTATGAGAAGTGGAGGGTTTGTCATTGCTGGGAGGAACAAAG
AATGATCCTCCCCCAGACTTCTTCCACTTTTCATAGCATCCTTCACTGTA
AGTGATGGAGTCTTGACAGTTATTATCCCGGCAAAGTTGTCGAAACTTGT
GCTTGGATAGATTCTGGGGTTTCGGGATGTTCTTCTTTAGCTCATTCACC
TCTTCATTCAACTTCTTCAATGTTTTCACCTTCTTCTCCAAAGTCGCTAT
CCGATCTTTCATGTCATCAATGGTATATTCCAATGTTATCTCCTCTGGTT
CTCTTTTCTCTTTCAAGATGACGCCAGGCTTGTAAATGTACAACAATTTT
GGCCATCCGTTACCGTTTGGAATATCTATCTCGTCCTCCGTCATCCTCAT
TAACACTGGTCTATCATCTACAAAGTAGGCCAGCCCTGTCGCCTCCGGAT
CGATAGACCGAACCTCACATAATTTGATGAATGACCTCACCAGATTGCCA
TCATCGTCCCGTTCTTCCCGTGTCAGAAGACTCATAAGAGATAAATTGAA
CAGAACAATATTGATGACAGCcattgtatttttgttttagttACAGATCT
AAAGAAACAATCAAATCAGCATTTAGATGAATATAAACAATAATGATaaa
agaattctttcaaaaccGCTAAAACCGAGCAAAA Run BLAST on NCBI protein sequence of TCONS_00014527-protein >TCONS_00014527-protein ID=TCONS_00014527-protein|Name=TCONS_00014527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MAVINIVLFNLSLMSLLTREERDDDGNLVRSFIKLCEVRSIDPEATGLAY
FVDDRPVLMRMTEDEIDIPNGNGWPKLLYIYKPGVILKEKREPEEITLEY
TIDDMKDRIATLEKKVKTLKKLNEEVNELKKNIPKPQNLSKHKFRQLCRD
NNCQDSITYSEGCYEKWKKSGGGSFFVPPSNDKPSTSHSKDHDGWGDSSY
HHSYNDHHHGYYGN Run BLAST on NCBI transcript from alignment at sc0000188:283414..284597 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014527 ID=TCONS_00014527|Name=TCONS_00014527|organism=Clytia hemisphaerica|type=transcript|length=1184bp|location=Sequence derived from alignment at sc0000188:283414..284597 (Clytia hemisphaerica)
TTTTGCTCGGTTTTAGCggttttgaaagaattcttttATCATTATTGTTT
ATATTCATCTAAATGCTGATTTGATTGTTTCTTTAGATCTGTaactaaaa
caaaaatacaatgGCTGTCATCAATATTGTTCTGTTCAATTTATCTCTTA
TGAGTCTTCTGACACGGGAAGAACGGGACGATGATGGCAATCTGGTGAGG
TCATTCATCAAATTATGTGAGGTTCGGTCTATCGATCCGGAGGCGACAGG
GCTGGCCTACTTTGTAGATGATAGACCAGTGTTAATGAGGATGACGGAGG
ACGAGATAGATATTCCAAACGGTAACGGATGGCCAAAATTGTTGTACATT
TACAAGCCTGGCGTCATCTTGAAAGAGAAAAGAGAACCAGAGGAGATAAC
ATTGGAATATACCATTGATGACATGAAAGATCGGATAGCGACTTTGGAGA
AGAAGGTGAAAACATTGAAGAAGTTGAATGAAGAGGTGAATGAGCTAAAG
AAGAACATCCCGAAACCCCAGAATCTATCCAAGCACAAGTTTCGACAACT
TTGCCGGGATAATAACTGTCAAGACTCCATCACTTACAGTGAAGGATGCT
ATGAAAAGTGGAAGAAGTCTGGGGGAGGATCATTCTTTGTTCCTCCCAGC
AATGACAAACCCTCCACTTCTCATAGTAAGGATCATGATGGATGGGGTGA
TAGCTCCTACCACCATTCCTATAATGACCATCATCACGGTTACTACGGTA
ATTAAGATGGGCATCATAGGATTGGTAGTAGGGCCGTCTTTTGATTGTTA
TTTTCTCGCCAGAGCAAAATTTTGCTTGGATGGATTCTAAATAAATAGTT
CAACGGAAAGGCTACTTCGctctttttattataattttaaatttcaaaac
atcgaACTTTTATGGTCTTTTCGTTGAACTTATTTTCGggatttttttca
agattttatttttttaagtcgTGTAAATTTATTTAGTTCtttcatttctt
catttttcttcttcgatgttttcattttttccagatCGTTATTCGATTTT
TTCATGTCAATGCAATTTTCTCCTCTGGACTTTTCTAAACGATTTTGAGT
TGAGTGCCAGGATTCTTTGTAGACACTATAAACACAcgatttggtcattt
ttaaaACTCCCCTCTGTCATCCTCATGACATAAA Coding sequence (CDS) from alignment at sc0000188:283414..284597 >TCONS_00014527 ID=TCONS_00014527|Name=TCONS_00014527|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000188:283414..284597 (Clytia hemisphaerica)
atgGCTGTCATCAATATTGTTCTGTTCAATTTATCTCTTATGAGTCTTCT
GACACGGGAAGAACGGGACGATGATGGCAATCTGGTGAGGTCATTCATCA
AATTATGTGAGGTTCGGTCTATCGATCCGGAGGCGACAGGGCTGGCCTAC
TTTGTAGATGATAGACCAGTGTTAATGAGGATGACGGAGGACGAGATAGA
TATTCCAAACGGTAACGGATGGCCAAAATTGTTGTACATTTACAAGCCTG
GCGTCATCTTGAAAGAGAAAAGAGAACCAGAGGAGATAACATTGGAATAT
ACCATTGATGACATGAAAGATCGGATAGCGACTTTGGAGAAGAAGGTGAA
AACATTGAAGAAGTTGAATGAAGAGGTGAATGAGCTAAAGAAGAACATCC
CGAAACCCCAGAATCTATCCAAGCACAAGTTTCGACAACTTTGCCGGGAT
AATAACTGTCAAGACTCCATCACTTACAGTGAAGGATGCTATGAAAAGTG
GAAGAAGTCTGGGGGAGGATCATTCTTTGTTCCTCCCAGCAATGACAAAC
CCTCCACTTCTCATAGTAAGGATCATGATGGATGGGGTGATAGCTCCTAC
CACCATTCCTATAATGACCATCATCACGGTTACTACGGTAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014527-exon-sc0000188-1491911889:283414..284597 | TCONS_00014527-exon-sc0000188-1491911889:283414..284597 | Clytia hemisphaerica | exon |
| TCONS_00014527-exon-sc0000188-1510915933:283414..284597 | TCONS_00014527-exon-sc0000188-1510915933:283414..284597 | Clytia hemisphaerica | exon |
| TCONS_00014527-exon-sc0000188-1575043694:283414..284597 | TCONS_00014527-exon-sc0000188-1575043694:283414..284597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188 | supercontig | sc0000188:283414..284597 . |
Blast
The following BLAST results are available for this feature:
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