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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014544 ID=TCONS_00014544|Name=TCONS_00014544|organism=Clytia hemisphaerica|type=transcript|length=3159bpRun BLAST on NCBI protein sequence of TCONS_00014544-protein >TCONS_00014544-protein ID=TCONS_00014544-protein|Name=TCONS_00014544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp MVFYSGVIEGFYGSPWSNEARKHLMEWLKSLNMNTYMYAPKDSSKHRKNWRun BLAST on NCBI transcript from alignment at sc0000190:87351..102264+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014544 ID=TCONS_00014544|Name=TCONS_00014544|organism=Clytia hemisphaerica|type=transcript|length=14914bp|location=Sequence derived from alignment at sc0000190:87351..102264+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000190:87351..102264+ >TCONS_00014544 ID=TCONS_00014544|Name=TCONS_00014544|organism=Clytia hemisphaerica|type=CDS|length=31410bp|location=Sequence derived from alignment at sc0000190:87351..102264+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014544 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2) HSP 1 Score: 326.635 bits (836), Expect = 2.363e-95 Identity = 150/283 (53.00%), Postives = 202/283 (71.38%), Query Frame = 1
Query: 547 FYSGVIEGFYGSPWSNEARKHLMEWLKSLNMNTYMYAPKDSSKHRKNWREPYGQAELDSLKTLIQAAKTNSINFVYAISPGLDVVFTSDTDVQSLKQKLEQVYKLGCRSFAILFDDIEPELCLVDKMEFASSAEAQAFLTNKVFEWFSDLQLILFCPTEYCTT--RADMKESEYLKTIGSKLHKEVQIFWTGPKVVPQEINSESLEYLTKLLQRKPVIWDNIHANDYDERRVFLGPYKGRPLDLYQNTNGILTNPNCEFEANFVAFESLALWYKQAEMNSTKE 1389
F GV+EGFYG PW E RK L L+ +NTY+YAPKD KHR WRE Y E + L TLI AA+ I F+YAISPGLD+ F++ +V +LK+KL+QV + GCRSFA+LFDDI+ +C DK F+S A AQ +TN+++++ + + LFCPTEYC T ++ +S YL+T+G KL +++ WTGPKVV +EI ES+E ++K+++R PVIWDNIHANDYD++R+FLGPYKGR +L G+LTNPNCEFEAN+VA +LA WYK + MN ++
Sbjct: 60 FLCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYK-SNMNGVRK 341 HSP 2 Score: 129.798 bits (325), Expect = 2.022e-30 Identity = 80/268 (29.85%), Postives = 134/268 (50.00%), Query Frame = 1
Query: 1606 KPICSMDLQIICHFFYLPYENGAIAEAFVKGFEWLKDN--MIQFDEQPSD-EEVEEWKTKSTNFQKRCEELCKVFDRISNIPNQRVAGELEQYISAARDAINMLKSYVKYLGSKEREETGSLIPPDPEAWFFRGGVIGQMERLVPT--CNDF----KSTISTNQIQVIRPYTKDDLEEIYKLCNKNL-----LPVE---DYLADKEKHQDAFDRSLGAFADFEQCTASFVLEIDDEICGVIFGHSEAKTFYTHQSKHWLPKMMSKYSK 2358
+P+ DLQ++ FYLPYE+G ++ F+WL+ N ++ + + D E++EEW++++ F++ C + +F R+SN N+ + ++ Y+ + ++M+KS+V++LG + LI D E W FRGG+ G+ +RL+P ND T+++ IRPY D +YK+C + LP + D + DK + C FVLE +D ICG G + F W+P M KY+K
Sbjct: 551 EPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWLGCRSHSSAQFLI-GDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSL-------DYC---FVLEDEDGICGYALGTVDVTPFIKKCKISWIPFMQEKYTK 807 The following BLAST results are available for this feature:
BLAST of TCONS_00014544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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