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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014548 ID=TCONS_00014548|Name=TCONS_00014548|organism=Clytia hemisphaerica|type=transcript|length=1178bp
TTCAGACGATAGAAAACGAAACTAAATGAATtattgaaaaagagaaaata
acaacaaagaaATGCTGAGAATGAAGAAGTCAAAACGTTTTTTAGTTCTG
TTGGTCCTATTAGCCACATTTTGTCGAGCCAAACCAATACCGCAGCTGTC
GGTAGTGCCAACACCATCTATAAGCAACAGTATACAAACTGAACTGTCAC
CTTCATCAAATATCGCTTCCGTAGTTTCAAGTGTTATACACGCATCATCA
GCTGTCACAAGCACAGAGTCTATTTTATTGAATCACATCGATACAAGTAC
AGTTTCAACATCTTCTATTATTGAtgtaaattctcaaaaatctaaTGACT
TGAAAAGTGTTATTCCTACGAGCTCTACATCATCGACGGTAACGGTCACT
TCGACCACCACtccaactacaacaacgaccgCTCCAACTACGACAAACAC
TATcccaactacaacaacgaccattccgacaacaacaacgaccattccga
caacaacaacgacaattccgacaacaacaacgaccaccccgaCTACGACA
ACAACAACCCcgacaacaacaacgacaaATCCGACAACCACAACGACCAC
TTCTACAACCACAACGACCACCCCGACTACCACAACGACCACcccaacta
caacaacgaccacgaCAACAACTACAGAGGCGAATGGGGAAGGAAAATGT
CAATCAAAAGTAAACCATGACTGCAGTATAGCAAATGGTGATGAAGATTG
TAAAGACAACTGTGGCAAGAAACTAAAATGCCGGGCTTTGTTCGGAGGCA
TTTTCGCCATGTGTATAGTTGATGGTTCTGACGGTAACGATATGACTGAT
ACAAATACGGCGTAGATTTTTGGTTACAATGTAGATTCGAGAACAAAAAA
AATCCCCAAAAAATACTTATGGAATTGACAGTTAGTTGGCTGGTTCAACA
AACATTGGAAATTAACGGTGGGATAAAAATGgtttgacaaatttttataa
aaagaaaatagaatataataatatgatatatattttaataaattaccttt
ttttgtaaatatagtTATAATAAGATTATTAGagtgtaaattatttttaa
atatttattcgTAGATAGGTAGGTTAACGACTataaaagagattttcaaa
agatatttaaacTTTAACAAAACCAAAA Run BLAST on NCBI protein sequence of TCONS_00014548-protein >TCONS_00014548-protein ID=TCONS_00014548-protein|Name=TCONS_00014548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MLRMKKSKRFLVLLVLLATFCRAKPIPQLSVVPTPSISNSIQTELSPSSN
IASVVSSVIHASSAVTSTESILLNHIDTSTVSTSSIIDVNSQKSNDLKSV
IPTSSTSSTVTVTSTTTPTTTTTAPTTTNTIPTTTTTIPTTTTTIPTTTT
TIPTTTTTTPTTTTTTPTTTTTNPTTTTTTSTTTTTTPTTTTTTPTTTTT
TTTTTEANGEGKCQSKVNHDCSIANGDEDCKDNCGKKLKCRALFGGIFAM
CIVDGSDGNDMTDTNTA Run BLAST on NCBI transcript from alignment at sc0000190:174681..176956+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014548 ID=TCONS_00014548|Name=TCONS_00014548|organism=Clytia hemisphaerica|type=transcript|length=2276bp|location=Sequence derived from alignment at sc0000190:174681..176956+ (Clytia hemisphaerica)
TTCAGACGATAGAAAACGAAACTAAATGAATtattgaaaaagagaaaata
acaacaaagaaATGCTGAGAATGAAGAAGTCAAAACGTTTTTTAGTTCTG
TTGGTCCTATTAGCCACATTTTGTCGAGCCAAACCAGTAAGTATTcttta
attgttttgttttttcataagGCGATGAAAATCTGTTCACTTATTCTTTC
CTTATTATGAAAAGCATGGAGCATTTTGGTAGAATTTCCTAAGAAACTGC
ATGTTTTAAAGCCCGCGAAGCCTTACAATCGTTCTTAGAATGTTCCTTAA
TTTCTctgcctcgaagccttatgtttttataaactttgctcttttagaaa
aaatacgTGTAATTGTTTTCttagaaattttcatcagaCAGTTTCATAGA
TGTATGTCTTTTGAATCACAAGGTTATTAAAAAACCGAACGTATCTCAAA
TCatgttatttttcattattctaGATACCGCAGCTGTCGGTAGTGCCAAC
ACCATCTATAAGCAACAGTATACAAACTGAACTGTCACCTTCATCAAATA
TCGCTTCCGTAGTTTCAAGTGTTATACACGCATCATCAGCTGTCACAAGC
ACAGAGTCTATTTTATTGAATCACATCGATACAAGTACAGTTTCAACATC
TTCTATTATTGAtgtaaattctcaaaaatctaaTGACTTGAAAAGTGTTA
TTCCTACGAGCTCTACATCATCGACGGTAACGGTCACTTCGACCACCACt
ccaactacaacaacgaccgCTCCAACTACGACAAACACTATcccaactac
aacaacgaccattccgacaacaacaacgaccattccgacaacaacaacga
caattccgacaacaacaacgaccaccccgaCTACGACAACAACAACCCcg
acaacaacaacgacaaATCCGACAACCACAACGACCACTTCTACAACCAC
AACGACCACCCCGACTACCACAACGACCACcccaactacaacaacgacca
cgaCAACAACTACAGAGGCGAATGGGGAAGGAAAATGTCAATCAAAAGTA
AACCATGACTGCAGTATAGCAAATGGTGATGAAGATTGTAAAGACAACTG
TGGCAAGAAACTAAAATGCCGGGCTTTGTNttagaaattttcatcagaCA
GTTTCATAGATGTATGTCTTTTGAATCACAAGGTTATTAAAAAACCGAAC
GTATCTCAAATCatgttatttttcattattctaGATACCGCAGCTGTCGG
TAGTGCCAACACCATCTATAAGCAACAGTATACAAACTGAACTGTCACCT
TCATCAAATATCGCTTCCGTAGTTTCAAGTGTTATACACGCATCATCAGC
TGTCACAAGCACAGAGTCTATTTTATTGAATCACATCGATACAAGTACAG
TTTCAACATCTTCTATTATTGAtgtaaattctcaaaaatctaaTGACTTG
AAAAGTGTTATTCCTACGAGCTCTACATCATCGACGGTAACGGTCACTTC
GACCACCACtccaactacaacaacgaccgCTCCAACTACGACAAACACTA
Tcccaactacaacaacgaccattccgacaacaacaacgaccattccgaca
acaacaacgacaattccgacaacaacaacgaccaccccgaCTACGACAAC
AACAACCCcgacaacaacaacgacaaATCCGACAACCACAACGACCACTT
CTACAACCACAACGACCACCCCGACTACCACAACGACCACcccaactaca
acaacgaccacgaCAACAACTACAGAGGCGAATGGGGAAGGAAAATGTCA
ATCAAAAGTAAACCATGACTGCAGTATAGCAAATGGTGATGAAGATTGTA
AAGACAACTGTGGCAAGAAACTAAAATGCCGGGCTTTGTTCGGAGGCATT
TTCGCCATGTGTATAGTTGATGGTTCTGACGGTAACGATATGACTGATAC
AAATACGGCGTAGATTTTTGGTTACAATGTAGATTCGAGAACAAAAAAAA
TCCCCAAAAAATACTTATGGAATTGACAGTTAGTTGGCTGGTTCAACAAA
CATTGGAAATTAACGGTGGGATAAAAATGgtttgacaaatttttataaaa
agaaaatagaatataataatatgatatatattttaataaattaccttttt
ttgtaaatatagtTATAATAAGATTATTAGagtgtaaattatttttaaat
atttattcgTAGATAGGTAGGTTAACGACTataaaagagattttcaaaag
atatttaaacTTTAACAAAACCAAAA Coding sequence (CDS) from alignment at sc0000190:174681..176956+ >TCONS_00014548 ID=TCONS_00014548|Name=TCONS_00014548|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0000190:174681..176956+ (Clytia hemisphaerica)
ATGCTGAGAATGAAGAAGTCAAAACGTTTTTTAGTTCTGTTGGTCCTATT
AGCCACATTTTGTCGAGCCAAACCAATACCGCAGCTGTCGGTAGTGCCAA
CACCATCTATAAGCAACAGTATACAAACTGAACTGTCACCTTCATCAAAT
ATCGCTTCCGTAGTTTCAAGTGTTATACACGCATCATCAGCTGTCACAAG
CACAGAGTCTATTTTATTGAATCACATCGATACAAGTACAGTTTCAACAT
CTTCTATTATTGAtgtaaattctcaaaaatctaaTGACTTGAAAAGTGTT
ATTCCTACGAGCTCTACATCATCGACGGTAACGGTCACTTCGACCACCAC
tccaactacaacaacgaccgCTCCAACTACGACAAACACTATcccaacta
caacaacgaccattccgacaacaacaacgaccattccgacaacaacaacg
acaattccgacaacaacaacgaccaccccgaCTACGACAACAACAACCCc
gacaacaacaacgacaaATCCGACAACCACAACGACCACTTCTACAACCA
CAACGACCACCCCGACTACCACAACGACCACcccaactacaacaacgacc
acgaCAACAACTACAGAGGCGAATGGGGAAGGAAAATGTCAATCAAAAGT
AAACCATGACTGCAGTATAGCAAATGGTGATGAAGATTGTAAAGACAACT
GTGGCAAGAAACTAAAATGCCGGGCTTTGTTCGGAGGCATTTTCGCCATG
TGTATAGTTGATGGTTCTGACGGTAACGATATGACTGATACAAATACGGC
GTAGATGCTGAGAATGAAGAAGTCAAAACGTTTTTTAGTTCTGTTGGTCC
TATTAGCCACATTTTGTCGAGCCAAACCAATACCGCAGCTGTCGGTAGTG
CCAACACCATCTATAAGCAACAGTATACAAACTGAACTGTCACCTTCATC
AAATATCGCTTCCGTAGTTTCAAGTGTTATACACGCATCATCAGCTGTCA
CAAGCACAGAGTCTATTTTATTGAATCACATCGATACAAGTACAGTTTCA
ACATCTTCTATTATTGAtgtaaattctcaaaaatctaaTGACTTGAAAAG
TGTTATTCCTACGAGCTCTACATCATCGACGGTAACGGTCACTTCGACCA
CCACtccaactacaacaacgaccgCTCCAACTACGACAAACACTATccca
actacaacaacgaccattccgacaacaacaacgaccattccgacaacaac
aacgacaattccgacaacaacaacgaccaccccgaCTACGACAACAACAA
CCCcgacaacaacaacgacaaATCCGACAACCACAACGACCACTTCTACA
ACCACAACGACCACCCCGACTACCACAACGACCACcccaactacaacaac
gaccacgaCAACAACTACAGAGGCGAATGGGGAAGGAAAATGTCAATCAA
AAGTAAACCATGACTGCAGTATAGCAAATGGTGATGAAGATTGTAAAGAC
AACTGTGGCAAGAAACTAAAATGCCGGGCTTTGTTCGGAGGCATTTTCGC
CATGTGTATAGTTGATGGTTCTGACGGTAACGATATGACTGATACAAATA
CGGCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014548-exon-sc0000190-1491911889:174681..174816 | TCONS_00014548-exon-sc0000190-1491911889:174681..174816 | Clytia hemisphaerica | exon |
| TCONS_00014548-exon-sc0000190-1510915933:174681..174816 | TCONS_00014548-exon-sc0000190-1510915933:174681..174816 | Clytia hemisphaerica | exon |
| TCONS_00014548-exon-sc0000190-1575043694:174681..174816 | TCONS_00014548-exon-sc0000190-1575043694:174681..174816 | Clytia hemisphaerica | exon |
| TCONS_00014548-exon-sc0000190-1491911889:175915..176956 | TCONS_00014548-exon-sc0000190-1491911889:175915..176956 | Clytia hemisphaerica | exon |
| TCONS_00014548-exon-sc0000190-1510915933:175915..176956 | TCONS_00014548-exon-sc0000190-1510915933:175915..176956 | Clytia hemisphaerica | exon |
| TCONS_00014548-exon-sc0000190-1575043694:175915..176956 | TCONS_00014548-exon-sc0000190-1575043694:175915..176956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000190 | supercontig | sc0000190:174681..176956 + |
Blast
The following BLAST results are available for this feature:
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