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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014553 ID=TCONS_00014553|Name=TCONS_00014553|organism=Clytia hemisphaerica|type=transcript|length=3925bpRun BLAST on NCBI protein sequence of TCONS_00014553-protein >TCONS_00014553-protein ID=TCONS_00014553-protein|Name=TCONS_00014553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1263bp MDERHWWITSKLLESFTKGVLEGKSVVEDFMTDGKTLKVIDKFFTDESDKRun BLAST on NCBI transcript from alignment at sc0000190:279263..315357+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014553 ID=TCONS_00014553|Name=TCONS_00014553|organism=Clytia hemisphaerica|type=transcript|length=36095bp|location=Sequence derived from alignment at sc0000190:279263..315357+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000190:279263..315357+ >TCONS_00014553 ID=TCONS_00014553|Name=TCONS_00014553|organism=Clytia hemisphaerica|type=CDS|length=71991bp|location=Sequence derived from alignment at sc0000190:279263..315357+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014553 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 127.102 bits (318), Expect = 4.282e-29 Identity = 116/530 (21.89%), Postives = 226/530 (42.64%), Query Frame = 2
Query: 1904 QHRERFHQLYLHFIKIIAEMEEKVETYTKGILEMKWNTLRRLEILACFHPLTTRSSLNALFKEHYDDTLMSFTNDMERVEETYMKLKDNAPTGRNLPTLSSSINWSRQLYHQIEAPMETFKDIKIVTELQKYPLAVKTYNKLATVLLCFEEKWMEIWRNQTEPTIPKLMKSSLLAIDTNNNKLVVHSNSRMFEVFKDIRSLKRLKVSIPKSLLTISAQEKNYKFYHQQLEYFVGKYYEIEATIPKDLEKLLMPMNDAVLATFQPGISILTWDNVNVDGYLHQLDVVISDWQSIISYVNIAMK-KLTQALSEMTSLLFIDKQTVFQQVWTTEDFATSCKDIIKQNYSRLSKLISNIDGLIKDVVRAMTSKTRMESAYPPHVXXXXXXSPKNVLA---------------NVKINAKYLFS----------------QLNSIFGDQVLNIIKQCTLNTFQ------------EFLMCCSIPQSHEEESVCFKVDITFKLPNIVLSPTLSQIQSTITDVGEFILETAYKLKLW 3361
Q + F Q Y F K ++ ++ + NT + L +L F L N + Y L ++ D++ + + Y K K + P RN P ++ I W+RQL+H+I+ PM+ F+ V + +++YN++A VLL FE + W Q E I +++SLL +L V+ + ++ +F++ + ++ + + ++ + YK ++ + +Y +++ IP +E+L++P V QPG++ LTW ++N++ YL I D + ++ VN ++ ++ L EM+S Q ++ T E+F KD+ L S ++ + ++V + + ++ N+ + KN + N + NA L + +L S F Q ++ + + T NT + F S + F+ +T +PNIV++P L +Q T+ E I+ ++ W
Sbjct: 528 QRKMDFDQDYEEFCKQTNDLHNELRKFMDVTFAKIQNTNQALRMLKKFERLNIP---NLGIDDKYQLILENYGADIDMISKLYTKQKYDPPLARNQPPIAGKILWARQLFHRIQQPMQLFQQHPAVLSTAEAKPIIRSYNRMAKVLLEFEVLFHRAWLRQIE-EIHVGLEASLLVKAPGTGELFVNFDPQILILFRETECMAQMGLEVSPLATSLFQKRDRYKRNFSNMKMMLAEYQRVKSKIPAAIEQLIVPHLAKVDEALQPGLAALTWTSLNIEAYLENTFAKIKDLELLLDRVNDLIEFRIDAILEEMSSTPLC--QLPQEEPLTCEEFLQMTKDLCVNGAQILHFKSSLVEEAVNELVNMLLDVEVLSEEESEKISNENSVNYKNESSAKREEGNFDTLTSSINARANALLLTTVTRKKKETEMLGEEARELLSHFNHQNMDALLKVTRNTLEAIRKRIHSSHTINFRDSNSASNMKQNSLPIFRASVTLAIPNIVMAPALEDVQQTLNKAVECIISVPKGVRQW 1051 HSP 2 Score: 87.4261 bits (215), Expect = 5.245e-17 Identity = 104/405 (25.68%), Postives = 179/405 (44.20%), Query Frame = 2
Query: 206 KSVVEDFMTDGKTLKVIDKFFTDESDKVILFCIVDTNGKKSLAIGDSG---ILSSLLQEN---VTED-------VVVYFIKCPNVSTVTVTNVEQEIYCGEIKQSAIVSFRDLVQKNIMKFAQKHLKVSNVTVQESKSFLLEMNKYAEMLVEFS---NAAEIPQQILNIPLEQSIGTFRSRQTALSANV----------------------------VAEYETYLQEWMQSIEHILMEHNSEDGEEDLYQVPSSMLAHWQKRLKRLSNVMLQVKTKQCKTVMAVLMTARSKLMRRWKVFDAGLTDAYNDAKDKVKYLELLLNSCEFDITTSKHLTKTLIPNLLANIKQSDSLSRYYAKTGFLGSFLCKFSFQLVECLKSNIKSLVVKELTSQPLDLWNSINEEVL 1288
K+ VED + +G ++ ID+ F + ++F D ++ +G G ++S +++ VTE V V+FI+ +T N+ QE VSF N++ A L +++V S F+ + + E +AA I Q+ L+ LE + Q +L V + + E ++ W++ E +L E+N E D P + L HW+KRL + + ++ Q+K+ K V+AVL A+SKL++ W+ D +TDA N+AKD VKYL L C+ ++ IP L+ IK S+S YY + + S K + Q++ K+ I + + +QP D+ + E++L
Sbjct: 52 KTEVEDAILEGNQIERIDQLFAVGGLRHLMFYYQDVEEAETGQLGSLGGVNLVSGKIKKPKVFVTEGNDVALTGVCVFFIRTDPSKAITPDNIHQE-----------VSF------NMLDAADGGL-LNSVRRLLSDIFIPALRATSHGWGELEGLQDAANIRQEFLS-SLEGFVNVLSGAQESLKEKVNLRKCDILELKTLKEPTDYLTLANNPETLGKIEDCMKVWIKQTEQVLAENNQLLKEADDVG-PRAELEHWKKRLSKFNYLLEQLKSPDVKAVLAVLAAAKSKLLKTWREMDIRITDATNEAKDNVKYLYTLEKCCDPLYSSDPLSMMDAIPTLINAIKMIYSISHYYNTSEKITSLFVKVTNQIISACKAYITNNGTASIWNQPQDV---VEEKIL 433 The following BLAST results are available for this feature:
BLAST of TCONS_00014553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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