TCONS_00014584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014584
Unique NameTCONS_00014584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014584 ID=TCONS_00014584|Name=TCONS_00014584|organism=Clytia hemisphaerica|type=transcript|length=413bp
AAAACGGGTTATCTCATCATAAATTATTCGAAGATAAAATCATGCAGTTG
TATCAAGTATCACAAATCAATCAAGGGATCGTGATATGCGGACAAAGCAA
AACAGGGAAATCAACTTTGGTTCAAACACTCATCCAATCGTTAGGTATTT
TAGCCGAAGAAACGGATAAAGAAAACCACATAACTTATCATCAAGAACAC
ATTAACGTTCTAGCGGTATCTAGCTTAGAGCAAATATTTGGTTGTATAAA
CGAGGCGGGTGATTGGGTGAATGGCGTGTTTACAGTGGCGTTGAAGAAAG
CCAATCAAAGTTTGTTGCAACATAAACAATCAACGTGGATTACACTGGAT
GGACCCTTACATGATGGATGGTGCTCTGCTTTGAATGGTCTCTTCGAACA
GAGAAAGGTTTAC
Run BLAST on NCBI

transcript from alignment at sc0000190:444211..446124+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014584 ID=TCONS_00014584|Name=TCONS_00014584|organism=Clytia hemisphaerica|type=transcript|length=1914bp|location=Sequence derived from alignment at sc0000190:444211..446124+ (Clytia hemisphaerica)
AAAACGGGTTATCTCATCATAAATTATTCGAAGATAAAATCATGCAGTTG
TATCAAGTATCACAAATCAATCAAGGTTTGTAATCACGTAAATCTCGCAT
CTTTTTTAGCAGGCAATTATATGGAGGGGTTTCGTCaatattttccccga
tttccgtcaaaccgtcaaacaaaaacagaaagtCCGCCACCAAAAATTCA
AGAATTCTGTCAAAAATTCCGAAAATTTGGACTATTACTTTCCTTCCGAA
CAATTTTTGTACTAAATGTCGATTTTTGGGACTAATAAAGCCTAGTTTTC
CGTCTGACGAGGAACTTGTGAATTTCCGTCAAATTTCGGCTATCTGTTCG
AAAAAAATGAGCGATTCCGCACCTCTGCCAACTGAGATTTTATTCATTTA
AGAAGATCTTAGACATTTCCCTATATTCTGTAAATTGAGGCTTGACCAGG
CTTGACTTTTAGGAATGTGTGAACCCATCACTGTTTTTTAAATAGACTTT
TTGATGTTCAATTGGGGGTGTTTCATTTAATATACATTTAAGACGAAGAC
GAACcctttcaagcaaaaaaattctttaaaatgtgTATGTTTtccccctg
gaaaatgaaaaaaattgcagaaaaaacCTTTGAAGAATTCTTCTTCGCAC
CTTTAAGTCAGTGTGGACGAACGAACATCAGTCTTTTAcgctttgcaaaa
aaaaaactcttaaacACCCTTCCCTGGAAATTCTTCATggattacccccc
ccccttggaaAAGTTTATCTGACCCACTGTATAGATGAAAAGTGGAATGG
CCCATTCTTGTATCGATTTTGATGCATTTCAGGGATCGTGATATGCGGAC
AAAGCAAAACAGGGAAATCAACTTTGGTTCAAACACTCATCCAATCGTTA
GGTATTTTAGCCGAAGAAACGGATAAAGAAAACCACATAACTTATCATCA
AGAACACATTAACGTTCTAGCGGTAAAGTtttcttatgaaattttttgat
ccTTTACATTCAAGAGTGAATGTAAGAGTTCGCATTGCTGAGCTCTAAAA
AGTTAAATGTCTTAAAATGAAGGacgattttattttttaagattgatatt
ttttatttttgaacataacttttgaaccaatgaagtagaattaaaaagta
atacaccaaattttaagttaggctttcttCTGAATTATTCcgaaacaatc
ttaaaaacgaAACGATATAAattcaaagagggtaacttatttgtggcaca
cccggtagttAGAGTGAGAATGGCGATTTCAATACTTCCACTTTACTTCA
TTGGATATTTTGATTTAGGAGAGGTTTAATGACTTCCAGACTATATTCTC
AATCTGCACCGTTTCCTCTGAACCAATCGTTTATCAAATGGGGGTAAGAA
ACGTGTAGTAAGTAACATTAAAACATAAAATGTCCTGAATTTATAGGTAT
CTAGCTTAGAGCAAATATTTGGTTGTATAAACGAGGCGGGTGATTGGGTG
AATGGCGTGTTTACAGTGGCGTTGAAGAAAGCCAATCAAAGTTTGTTGCA
ACATAAACAATCAACGTGGATTACACTGGATGGACCCTTACATGATGGAT
GGTGCTCTGCTTTGAATGGTCTCTTCGAACAGAGAAAGGTATACATTGTG
CATAGTTCTTTCGTCTTAGACTTATTTCTTCTTCAGCAAGGTACAAAAGG
AGGCTTTCTCGCCTTCAAACATaacaaaagcatttttttgacCACTGGGT
AAAGTACGCGATTTATAAAGGGTTCAAATTCAGATTCTCCTGACTGGTAT
GTTTTACACTTGTAAATTCAACCAGTTGTCTATCCTCTGCATTTAACAGT
CTTTCTATCTCTTACAATTGCGGACGGTTTAAGTTAAAACTATTATTTAT
TTCCACAGGTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008155XLOC_008155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014584-exon-sc0000190-1491911889:444211..444285TCONS_00014584-exon-sc0000190-1491911889:444211..444285Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1510915933:444211..444285TCONS_00014584-exon-sc0000190-1510915933:444211..444285Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1575043694:444211..444285TCONS_00014584-exon-sc0000190-1575043694:444211..444285Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1491911889:445043..445182TCONS_00014584-exon-sc0000190-1491911889:445043..445182Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1510915933:445043..445182TCONS_00014584-exon-sc0000190-1510915933:445043..445182Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1575043694:445043..445182TCONS_00014584-exon-sc0000190-1575043694:445043..445182Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1491911889:445657..445848TCONS_00014584-exon-sc0000190-1491911889:445657..445848Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1510915933:445657..445848TCONS_00014584-exon-sc0000190-1510915933:445657..445848Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1575043694:445657..445848TCONS_00014584-exon-sc0000190-1575043694:445657..445848Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1491911889:446119..446124TCONS_00014584-exon-sc0000190-1491911889:446119..446124Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1510915933:446119..446124TCONS_00014584-exon-sc0000190-1510915933:446119..446124Clytia hemisphaericaexon
TCONS_00014584-exon-sc0000190-1575043694:446119..446124TCONS_00014584-exon-sc0000190-1575043694:446119..446124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000190supercontigsc0000190:444211..446124 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.58162	0	0.294773	0	0	0	0.0875463	0	0	0	0	0	0	0	0	0	3.08967	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top