TCONS_00014585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014585
Unique NameTCONS_00014585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014585 ID=TCONS_00014585|Name=TCONS_00014585|organism=Clytia hemisphaerica|type=transcript|length=733bp
AAAACGGGTTATCTCATCATAAATTATTCGAAGATAAAATCATGCAGTTG
TATCAAGTATCACAAATCAATCAAGGGATCGTGATATGCGGACAAAGCAA
AACAGGGAAATCAACTTTGGTTCAAACACTCATCCAATCGTTAGGTATTT
TAGCCGAAGAAACGGATAAAGAAAACCACATAACTTATCATCAAGAACAC
ATTAACGTTCTAGCGGTATCTAGCTTAGAGCAAATATTTGGTTGTATAAA
CGAGGCGGGTGATTGGGTGAATGGCGTGTTTACAGTGGCGTTGAAGAAAG
CCAATCAAAGTTTGTTGCAACATAAACAATCAACGTGGATTACACTGGAT
GGACCCTTACATGATGGATGGTGCTCTGCTTTGAATGGTCTCTTCGAACA
GAGAAAGGTATACATGCAACCTGACATGAAGCAACACCATCTGAACAAGA
ATGTGACTTTTGTTTACGAAACACACACGTTAGATCACATATCTCCAACT
GTCTTTGCAAATATGAGTATCGTATACATGGATAACTCAGCACTTGGTTG
GAGGCCTCTTGCGAATGCATGGTTAGCTAAACAAGATCAAACTTATTTCC
ATGTACTTCAACGTTCTTTCCATAAAAGCGTTGACCGATGTCTACAATTT
GTACAAGATGAGGCTAGATGCTGTGTTACTTTATCAGAAGGTTCATTGTT
TTCTTCGTGTCTCAGCATGTTATCCAGTTTATT
Run BLAST on NCBI

transcript from alignment at sc0000190:444211..449086+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014585 ID=TCONS_00014585|Name=TCONS_00014585|organism=Clytia hemisphaerica|type=transcript|length=4876bp|location=Sequence derived from alignment at sc0000190:444211..449086+ (Clytia hemisphaerica)
AAAACGGGTTATCTCATCATAAATTATTCGAAGATAAAATCATGCAGTTG
TATCAAGTATCACAAATCAATCAAGGTTTGTAATCACGTAAATCTCGCAT
CTTTTTTAGCAGGCAATTATATGGAGGGGTTTCGTCaatattttccccga
tttccgtcaaaccgtcaaacaaaaacagaaagtCCGCCACCAAAAATTCA
AGAATTCTGTCAAAAATTCCGAAAATTTGGACTATTACTTTCCTTCCGAA
CAATTTTTGTACTAAATGTCGATTTTTGGGACTAATAAAGCCTAGTTTTC
CGTCTGACGAGGAACTTGTGAATTTCCGTCAAATTTCGGCTATCTGTTCG
AAAAAAATGAGCGATTCCGCACCTCTGCCAACTGAGATTTTATTCATTTA
AGAAGATCTTAGACATTTCCCTATATTCTGTAAATTGAGGCTTGACCAGG
CTTGACTTTTAGGAATGTGTGAACCCATCACTGTTTTTTAAATAGACTTT
TTGATGTTCAATTGGGGGTGTTTCATTTAATATACATTTAAGACGAAGAC
GAACcctttcaagcaaaaaaattctttaaaatgtgTATGTTTtccccctg
gaaaatgaaaaaaattgcagaaaaaacCTTTGAAGAATTCTTCTTCGCAC
CTTTAAGTCAGTGTGGACGAACGAACATCAGTCTTTTAcgctttgcaaaa
aaaaaactcttaaacACCCTTCCCTGGAAATTCTTCATggattacccccc
ccccttggaaAAGTTTATCTGACCCACTGTATAGATGAAAAGTGGAATGG
CCCATTCTTGTATCGATTTTGATGCATTTCAGGGATCGTGATATGCGGAC
AAAGCAAAACAGGGAAATCAACTTTGGTTCAAACACTCATCCAATCGTTA
GGTATTTTAGCCGAAGAAACGGATAAAGAAAACCACATAACTTATCATCA
AGAACACATTAACGTTCTAGCGGTAAAGTtttcttatgaaattttttgat
ccTTTACATTCAAGAGTGAATGTAAGAGTTCGCATTGCTGAGCTCTAAAA
AGTTAAATGTCTTAAAATGAAGGacgattttattttttaagattgatatt
ttttatttttgaacataacttttgaaccaatgaagtagaattaaaaagta
atacaccaaattttaagttaggctttcttCTGAATTATTCcgaaacaatc
ttaaaaacgaAACGATATAAattcaaagagggtaacttatttgtggcaca
cccggtagttAGAGTGAGAATGGCGATTTCAATACTTCCACTTTACTTCA
TTGGATATTTTGATTTAGGAGAGGTTTAATGACTTCCAGACTATATTCTC
AATCTGCACCGTTTCCTCTGAACCAATCGTTTATCAAATGGGGGTAAGAA
ACGTGTAGTAAGTAACATTAAAACATAAAATGTCCTGAATTTATAGGTAT
CTAGCTTAGAGCAAATATTTGGTTGTATAAACGAGGCGGGTGATTGGGTG
AATGGCGTGTTTACAGTGGCGTTGAAGAAAGCCAATCAAAGTTTGTTGCA
ACATAAACAATCAACGTGGATTACACTGGATGGACCCTTACATGATGGAT
GGTGCTCTGCTTTGAATGGTCTCTTCGAACAGAGAAAGGTATACATTGTG
CATAGTTCTTTCGTCTTAGACTTATTTCTTCTTCAGCAAGGTACAAAAGG
AGGCTTTCTCGCCTTCAAACATaacaaaagcatttttttgacCACTGGGT
AAAGTACGCGATTTATAAAGGGTTCAAATTCAGATTCTCCTGACTGGTAT
GTTTTACACTTGTAAATTCAACCAGTTGTCTATCCTCTGCATTTAACAGT
CTTTCTATCTCTTACAATTGCGGACGGTTTAAGTTAAAACTATTATTTAT
TTCCACAGGTTTACATGCAACCTGACATGAAGCAACACCATCTGAACAAG
AATGTGACTTTTGTTTACGAAACACACACGTTAGATCACATATCTCCAAC
TGTCTTTGCAAATATGGTACGAGTTAATCGATTCATTCTTTGCTTGTTCA
TTTaaaaactaggtcacagtgtggatgtaaaccacactgaaacgaccgcc
ttccatcacgcatcacgctcgcgaaagagcgcgcgcacattattaacgcc
tacatgtccagtaaattttagattattcattgaaaacagattacaatata
gtcatttttcatgtctcaaCTATTTAATTCCAAATAAAAGACATTcggga
aaaaaaaagagaaacacctgagtaatctagttaaaaaaaccgaaagtaaa
tggtagacaaagtaatgagccaaggcaaaaggagattagcgtaccactat
gaaagaaaccgcctccggcctTTGATTATTCCACTTTTACGGCTAAAAGG
GCAAGACTGAACAGGAAAAGCCAAAAGATTGAGGCTAGAAATCAGCTCTC
ACTGGGATTCAGAAGTTTGATGGTTAAACTGTgtgtaaagtaaagaaatc
taaatgtgaaaaaataaagaattttgtaaaaaagttcaCAACCACGGACA
AAGTATCAGCCATTATAAATCCNaaattgtaaaaaagttcaCAAACGGAC
AAAGTATCAGCCATTATAAATCCTTAAACTTTTTTCGTGGGTCACTTGGT
ATGTAAATAAAGTAACAGTTTACCGAGTTATTAGCTACTCCGTCTCAGCA
AAGTATGAGGCTTTTTCGTCTcgaaattctgcataattcaacaagatttc
aaaaaaatacgcTAATTTTCTGTGTACaatcatggaggtaataaaaatag
atggagagtcaatgccttttgttctattctgatttatcatcggaatcaaa
tagctgtttggttgctttgggaataagatgattaatgttgggtatactcg
tgggaatatttaaaaaagatgaatgaaaagacattacatttttaacaagt
ttattggaataaaaatgtcatgtcatgaaaaattgcaaaaaacttcacat
aataagcacaatactccaaacttctTCCCAAAAGGGGAAGCTGCCaataa
agccatcgatagatttaaaaaagaattacgtgttacgattaggaaccttg
tatcgatcattttgtcaaagtatgaaaaccgctgcccacttagacgtgaa
gattttaagataagaaactttcattgataatgtgatgcaattctcaatgt
taacaaaatgccagcccaaaaatgtgtccttatgaaattaatatactctt
ttagtcttgcatcagttgaaactatttcgaattgcattttaacaaggatt
ttcggcaaaattaagtttttcaaaatcaaccaaacagtctctttctgttc
tttataaagttataaattggtgttttttgcttccaatgatggtacatcaa
agaaaagccgctttgaatagatttataaaagatttcaacgaccatttaga
tcattaccgagacgttttctctccatCTATATCTTTATTACCTCCATGGT
ACAATCCAATTTcgtctcagacgaaaaaccTCGCTTTGACCACCGAATTT
CAGATGATAGAGTATCCTCCATTCAGTGCTTGGTAGCTGAATCattaatt
ttcatcattttgatttCATTCTAGAGTATCGTATACATGGATAACTCAGC
ACTTGGTTGGAGGCCTCTTGCGAATGCATGGTTAGCTAAACAAGATCAAA
CTTATTTCCATGTAAGTTAAACACAAAATCGACGGGGACgtaccgctggt
cagggtccctttttaggctctgaagatatttGACAGGGTcttaaatttac
taattttcacgatgtttatctgacagggtcgactgTTAATCATTTTGGCC
ACTTGTCAGggtgaaaatagtaaaatttttctacttttctttcTGACAGG
GTCTCAAATTTACCAACCATTaccgtccccgtcggccgtgaagctcagtg
cccccccccgggacaaGTAATAATTGATAAAGTAGTAAGCTCACGTGTCT
ACGTTATGGACTGAAAGGATTTTAAACAATACGGCATTTTCCCCAACAAA
ATTAATCAAGCACTGATAAGCCGTCGTTCTCAGTCCATCAGGATCTAAAC
AAAGGAAGTACTAACCGTCTCTGTCGCAAACAAAGGATACATCGACTTGC
TTGTTATTACCGGAACGCGTTCTCTACAGAATTTGTTATTTCACCAATCG
ATGTTTATCTGCATTTTATTTGTCTTTAATATgagatcaaaatatttttt
tatcaatttatggAATGATGGTCACGTGTCTAAGGCGTCAGAGCCACAAA
CAAAGAGTTCCCAGTTCTATTCCTTGCTCCCTCTGATATTCTGTTCAATT
CATAGATAGTCGATCTGGtgggccgtggaccccgtgaaaacagtTGAAAG
ACTATTAAAGCCATATTTTATTTGACTATCCACATAAAACATAGAATATT
TATCAATGAATTTATTATCGTTTGTTTTTCAGGTACTTCAACGTTCTTTC
CATAAAAGCGTTGACCGATGTCTACAATTTGTACAAGATGAGGCTAGGTT
AGTTTTCTTTCGTTGATTCACTTCAAACTTTCATTGCCATCTGAAGTTAT
GTCAAGATCACAGTAGCATAGACAAAaggggtgcaaaatttgtgtttgat
ttttatagtaataaagtcaaaaaatctGTTCTCTGACACAAATTTCGCGC
CCTTTTTGTCTACACTACTGGATCACGTGgtataaaaaagtttgaacact
AAAAACTACTTTCGGTCTTTTACAGTTTATATTTTACTTTAAATTCTTGT
TTATTTTCAGATGCTGTGTTACTTTATCAGAAGGTTCATTGTTTTCTTCG
TGTCTCAGCATGTTATCCAGTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008155XLOC_008155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014585-exon-sc0000190-1491911889:444211..444285TCONS_00014585-exon-sc0000190-1491911889:444211..444285Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1510915933:444211..444285TCONS_00014585-exon-sc0000190-1510915933:444211..444285Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1575043694:444211..444285TCONS_00014585-exon-sc0000190-1575043694:444211..444285Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1491911889:445043..445182TCONS_00014585-exon-sc0000190-1491911889:445043..445182Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1510915933:445043..445182TCONS_00014585-exon-sc0000190-1510915933:445043..445182Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1575043694:445043..445182TCONS_00014585-exon-sc0000190-1575043694:445043..445182Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1491911889:445657..445854TCONS_00014585-exon-sc0000190-1491911889:445657..445854Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1510915933:445657..445854TCONS_00014585-exon-sc0000190-1510915933:445657..445854Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1575043694:445657..445854TCONS_00014585-exon-sc0000190-1575043694:445657..445854Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1491911889:446125..446226TCONS_00014585-exon-sc0000190-1491911889:446125..446226Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1510915933:446125..446226TCONS_00014585-exon-sc0000190-1510915933:446125..446226Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1575043694:446125..446226TCONS_00014585-exon-sc0000190-1575043694:446125..446226Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1491911889:447835..447921TCONS_00014585-exon-sc0000190-1491911889:447835..447921Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1510915933:447835..447921TCONS_00014585-exon-sc0000190-1510915933:447835..447921Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1575043694:447835..447921TCONS_00014585-exon-sc0000190-1575043694:447835..447921Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1491911889:448693..448757TCONS_00014585-exon-sc0000190-1491911889:448693..448757Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1510915933:448693..448757TCONS_00014585-exon-sc0000190-1510915933:448693..448757Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1575043694:448693..448757TCONS_00014585-exon-sc0000190-1575043694:448693..448757Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1491911889:449021..449086TCONS_00014585-exon-sc0000190-1491911889:449021..449086Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1510915933:449021..449086TCONS_00014585-exon-sc0000190-1510915933:449021..449086Clytia hemisphaericaexon
TCONS_00014585-exon-sc0000190-1575043694:449021..449086TCONS_00014585-exon-sc0000190-1575043694:449021..449086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000190supercontigsc0000190:444211..449086 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0477053	0.937335	0.034938	1.66082e-05	2.69049	1.72089	0	0	0.163224	1.65997	0	3.2779	0	0.0627146	0	0.218795	0	0	0.204072	0.996104	0.213751	0	0.211056	1.24217	3.9524e-08	1.29688e-09	0.482837	0	0	0
Blast
[Close]
BLAST of TCONS_00014585 vs. Swiss-Prot (Human)
Match: DYH8 (Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.682e-23
Identity = 52/194 (26.80%), Postives = 105/194 (54.12%), Query Frame = 3 
Query:    6 GLSHHKLFEDKIMQLYQVSQINQGIVICGQSKTGKSTLVQTLIQSLGILAEETDKENHITYHQEHINVLAVSSLEQIFGCINEA-GDWVNGVFTVALKKANQSLLQHKQSTWITLDGPLHDGWCSALNGLFEQRKVYMQPDMKQHHLNKNVTFVYETHTLDHISPTVFANMSIVYMDNSALGWRPLANAWLAKQ 584
            GL +H  +  K++QLY+ S +  G++  G S +GK+T++  L+++          E    + +  +N  A+++  Q+FG ++ A  DW +G+F+   +K  ++  +  ++ ++ LDGP+   W   LN + +  K     +  +  +  +   ++E H +++ SP   + M +VY+ +SAL WRP+  AWL K+
Sbjct: 2100 GLINHPPWNLKLVQLYETSLVRHGLMTLGPSGSGKTTVITILMKA--------QTECGRPHREMRMNPKAITA-PQMFGRLDTATNDWTDGIFSTLWRKTLKA--KKGENIFLILDGPVDAIWIENLNSVLDDNKTLTLANGDRIPMAPSCKLLFEVHNIENASPATVSRMGMVYISSSALSWRPILQAWLKKR 2282
The following BLAST results are available for this feature:
BLAST of TCONS_00014585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH87.682e-2326.80Dynein heavy chain 8, axonemal OS=Homo sapiens GN=... [more]
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