Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014590 ID=TCONS_00014590|Name=TCONS_00014590|organism=Clytia hemisphaerica|type=transcript|length=2114bpRun BLAST on NCBI protein sequence of TCONS_00014590-protein >TCONS_00014590-protein ID=TCONS_00014590-protein|Name=TCONS_00014590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp MVSALISRVILLVFGTLYPAYRSYKAIKNKDVREYVKWMMYWIIFAFFTTRun BLAST on NCBI transcript from alignment at sc0000190:118605..134703- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014590 ID=TCONS_00014590|Name=TCONS_00014590|organism=Clytia hemisphaerica|type=transcript|length=16099bp|location=Sequence derived from alignment at sc0000190:118605..134703- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000190:118605..134703- >TCONS_00014590 ID=TCONS_00014590|Name=TCONS_00014590|organism=Clytia hemisphaerica|type=CDS|length=8532bp|location=Sequence derived from alignment at sc0000190:118605..134703- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014590 vs. Swiss-Prot (Human)
Match: REEP1 (Receptor expression-enhancing protein 1 OS=Homo sapiens GN=REEP1 PE=1 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 1.449e-60 Identity = 100/163 (61.35%), Postives = 123/163 (75.46%), Query Frame = 3 Query: 132 MVSALISRVILLVFGTLYPAYRSYKAIKNKDVREYVKWMMYWIIFAFFTTGETFADMFLSWLPLYYEIKIVFIVWLLSPATKGSSILYRKFVHPRLVKHEKAIDRYIARAQNRSYATLMDVGKKGFNVATDTLLKTAATGQIQLVQTLRKYNSMQDLTTDSTD 620 MVS +ISR+++L+FGTLYPAY SYKA+K+KD++EYVKWMMYWIIFA FTT ETF D+FL W P YYE+KI F+ WLLSP TKGSS+LYRKFVHP L EK ID + +A++RSY L+ GK+G NVA + A+ GQ L + LR + SMQDLTT D Sbjct: 1 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSF-SMQDLTTIRGD 162 The following BLAST results are available for this feature:
BLAST of TCONS_00014590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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