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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014593 ID=TCONS_00014593|Name=TCONS_00014593|organism=Clytia hemisphaerica|type=transcript|length=1477bp
GTCAAGAAGTTTGATGTATGACGTTGCTGGATCACCACGTAAAGGGAGCG
TTAAAACACCTTCTTCAATACTTGGCTCAAGACCTAATGCAATTCCTAAT
GAAAAGTTTACCAATATAGAAGATCCTGTACGACGCCAATCTAAGACAGC
ATCAGTATACGGTTCAGTAGATCCCGAATCAACATCCAAACTTCGTGGTT
TCATTTTGCTACCAGATGTTGTAGATTTTGGTGTCTTAACTGAAGGTTAT
TCTTACACACACCAAGTCACCATGAAAAATGTTGGAATTGATTCTTGTAG
ATATAAAATCAAACAACCACCCTTGTCTACTGGTTTAAAGATCATCTATC
AGCCGGGACAGGTGGCGGCAGGAATGCAAGTGACATTTGATGTGGAAATC
TTTGCTGTGGCAGTCGGTGTTGAAAGCGGCTCATGTGGAATCGGTCAAAT
TTCACACCACGTGGAGATTATCAGTGAAACTGATATCCTCTACCTTCCTG
TTATAGCAACAATCATAACACAAGATGAATTACAACACCCATCAGAAATG
ACGCCCCAGGGCGGGCCTTCCAAAGGCACCCTCATACTTGACAAACGCCC
GTCGTCTCGTGAGATGTTACGCTCAAGAAAAGAGTAAAAAAGTGCGGGAG
TATGCTTTCAGGTTATCTTGTTAGAAGATGAGATGTATGTACAggtatta
tttatttattttgttcatAGTGACTAACCATAGCGCTCTTAATCTTCAGA
CCTATCAAGTGTACACCAACTTCGATTTTGTGAGGGCTCAATTTTATTTT
CTGCAAATATTTGAAGATGCTGACGTCACTTCGTTAGCTATAAAACAGTG
AGAAAAGTCGGAAGGGAGATAAGATTTTGGTGAAAAAAGACGCATAAATA
GACAAAAATCAACCATGACAGAACGAGTACATTGGGAGCTTGTTTGTTaa
agatttagaacgccatgtgaCTAACAATATATATTTTCAGCACTTACGAG
CATCTTCCAATATTTTCTATAGAAATCACCGAATGCTATAGTGCTCTATC
CCATACATAAGTTATGGGGTGATTTACGTTGCTTGATTCCTCGTTAGGAC
AACATCAATTATATTCAATCAATGTGCCCAAAAATGATATACTGAAGTGG
AATTTTTAAGTATGAGTGGGcgagatttcaaaaaaaaaatttctgacgtc
aattcCCACTCAAAGCACTTTTAAAACGGCCCGTCAAAAAACTTCAAGAC
CGTTCACTTTAGATAACTACAGTATTTATTTAAAAGGGTGGAGTCCATAT
TGAGGTCACAATTTGGCAATCTTTTTCACAAAACAGAACGTGAAGATTAA
TATAATTACCTCTAGTGTTTATTTTTGGTCAAAACTTGTATAATAGCAAA
CTTTagattgtaaatatttcaaataatttcgAATCTATTTTTTAACCAAA
CGTAAATAAACAAAGTTATTTTCTGAC Run BLAST on NCBI transcript from alignment at sc0000190:192794..198843- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014593 ID=TCONS_00014593|Name=TCONS_00014593|organism=Clytia hemisphaerica|type=transcript|length=6050bp|location=Sequence derived from alignment at sc0000190:192794..198843- (Clytia hemisphaerica)
GTCAAGAAGTTTGATGTATGACGTTGCTGGATCACCACGTAAAGGGAGCG
TTAAAACACCTTCTTCAATACTTGGCTCAAGACCTAATGCAATTCCTAAT
GAAAAGGTTTGTGAAGAAATTGTCCAGAATGCATTGTAAATTGTATCCAT
TACATGTATTGTAAGGGGAAACTTTTTGACAGAGGTCAGATTTTAAGGTA
TTGCCGGATAAGTAAATGGAAGATTTGCCCAGTGTTTCGGGTAGTAATTT
TCCAAATAAGATCTAAACGATTTCTTGTGGGGTGTTTAAAAATGTTTGGA
TTTAGAGGCAATCCCCCTAGTATTATTTATGTGGCTTTTGATTCTCCCAA
AAATTTCATATACATCAGAGAACAGTGCCTCGAAATACGAACTCTAAACC
CTTGACAATAATTTATAACCGGTGATTTCTATCATATAGATTAGACTGAA
ATGCTTACAAACTCGTACAAAATAATTTGTGTAATTGAAAAATCTTCTTC
TATAGTTTACCAATATAGAAGATCCTGTACGACGCCAATCTAAGACAGCA
TCAGTATACGGTTCAGTAGATCCCGAATCAACATCCAAACTTCGTGGTTT
CATTTTGCTACCAGATGTTGTAGATTTTGGTGTCTTAACTGAAGGTTATT
CTTACACACACCAAGTCACCATGAAAAATGTTGGAATTGATTCTTGTAGA
TATAAAATCAAACAACCACCCTTGTCTACTGGTTTAAAGATCATCTATCA
GCCGGGACAGGTAATAGTAAATCTCGTACCTTCTCCAACTTCCTTTCTTA
CAACACTCGTAATTTCATCACTCCATACCACATATATTTTTTTAAACATA
AAGTTTTTGTAATCTTTTTCTTTCCAGGTGGCGGCAGGAATGCAAGTGAC
ATTTGATGTGGAAATCTTTGCTGTGGCAGTCGGTGTTGAAAGCGGCTCAT
GTGGAATCGGTCAAATTTCACACCACGTGGAGATTATCAGTGAAACTGAT
ATCCTCTACCTTCCTGTTATAGCAAGTATCCTTTTCAATTCAATTAATAT
GTTTCAATTTTTGCACCCTCAAAGNCCCCCCCCGGCTATTAGGTACCCGA
GAGTACCAAGGCTGTCTTAATCCCTTCAGTCTTCAAGTGTTACTTTTATA
ATAGAATAAACTTCTTATTAATTCCGCAATATTTTGAAAACAAGGTGAGC
GTTGCACGTGACGTAATTTATGAAAAGGTCTATCTAGGCTAATTTGTCGT
TTTGAGTATATTTTCCTATCAACTTCCTTTCAGTTTCGTCAAGCACGCCA
CACCATGAAGATTCTTCCTTCTTGATTGAAGATCCTTCTTCCTCAATGTC
AATGAAGAACGATTACAGTATCAACAGTATATCACCTTACGATAGCAGCA
CAAGTGGGCGTCCTCTTAATCCGACACCGCAACGTGCCAAGAATACAAGT
TTTACTAAGAATAGTGTTCCGTTACTGGAATCGAAGCTAGATCCAATCAC
AGAATCTAATTTCACTGAACAACCTTCGTCAATGAATGAGAGTAGTAAAG
GTTTGTGTACTAAGTATTCATTAATGTAAAGGGAACAAATTTTCGCGGAA
CAAATTTTCGCGGAATTTAATTTCACGCTTTTTCGACAAATCTGCAAAAT
TAAATCCTGTGCAACAAGAATATTCTCATGATTTAAAAAATCGCTTTTCA
GGGCAAACTAGGCCATATTTGAAACAAAAAATCCTCTCAACCGCGAAATT
AAATTCCGTGAAAATTTCTTCCCTTAAGGTGTTTCTATGACAAAATGTTG
AAACGTCCAAAGAGAATCGTAGAAATCCTTGCGCTTGTTCATCAAAATTC
TTCTTTAGTGATCACATCAGTTAGTTTTTAATTTGTCTAGATCCCGACTG
ACTGAGGACGATGGTTCATCAGCTCTTTTTTACCGTCCTCGATTTTGCAG
GTTTTTAAATAAATACAAATACGACTGTTTTGATTTGTAAATTAGTAATA
AATGTCAACTATAAAATAGCCAGAGAAACACACGATTACTCTATAACACC
ATGTGTATAACTGTCTTTTTGATGAGGTAAATGCTTTCCAACTGAATTTA
CCAAATATCATCATCGTGGGCTCTTTTCCCCCAAAAAAACCCAAATCACG
AGTCATCATAAAAGGAAGTGATTGATTGTACAGCTCCCCTGGGGGGGGGC
ACTTAGGTTGTGATCTGACAGGGGGTGCCGCCTGACTGAATTTTGTGAAT
TTTATGATCCTTATTGGGACAAATTTGACCAATTTTGTCCAAATTTTGAT
CTTTCTGGGGGTAAAAAGTTGAAATTTTCCTATTTCTCTGACCCTAATGA
TTTTCCCGACCCTTAGCGAGACTTTCGAAATCCAAAAAGGTACCCTTAAG
ATCGGCATATACCGTACCCTCCATTTGTTTAAGTACCCTCCCCCGGGACG
GCTCCTCAGAAGTCTTACTCTTTTGTTACAGGCATGTTGTCAAGAAGTTT
GATGTATGACGTTGCTGGATCACCACGTAAAGGGAGCGTTAAAACACCTT
CTTCAATACTTGGCTCAAGACCTAATGCAATTCCTAATGAAAAGGTTTGT
GAAAAAATTGTCCAGAATGCATTGTAAATTGTATCCATTACATGTATTGT
AAGGGGAAACTTTTTGACAGAGGTCAGATTTTAAGGTATTGCCGGATAAG
TAAATGGAAGATTTGCCCAGTGTTTCGGGTAGTAATTTTCCAAATAAGAT
CTAAACGATTTCTTGTGGGGTGTTTAAAAATGTTTGGATTTAGAGGCAAT
CCCCCTAGTATTATTTATGTGGCTTTTGATTCTCCCAAAAATTTCATATA
CATCAGAGAACAGTGCCTCGAAATACGAACTCTAAACAATAATTTATAAC
CGGTGATTTCTATCATATAAATCAGACTGGAATGCTTACAAACTCGTACA
AAATTTGTGCAATTGACAAATTTTCCCTTATAGTTTACCAATATAGAAGA
TCCTGTACGACGCCAATCTAAGACAGCATCAGTATACGGTTCAGTAGATC
CCGAATCAACATCCAAACTTCGTGGTTTCATTTTGCTACCAGATGTTGTA
GATTTTGGTGTCTTAACTGAAGGTTATTCTTACACACACCAAGTCACCAT
GAAAAATGTTGGAATTGATTCTTGTAGATATAAAATCAAACAACCACCCT
TGTCTACTGGTTTAAAGATCATCTATCAGCCGGGACAGGTAATAGTAAAT
CTCGTACCTTCTCCAACTTCCTTTCTTACAGTACTCGTAATTTCATCACT
CCATACCACATATATTTTTTTAAACATTTAAAAAGTTAAACAGTTTTTGT
AATCTTTTTCTTTCCAGGTGGCGGCAGGAATGCAAGTGACATTTGATGTG
GAAATCTTTGCTGTGGCAGTCGGTGTTGAAAGCGGCTCATGTGGAATCGG
TCAAATTTCACACCACGTGGAGATTATCAGTGAAACTGATATCCTCTACC
TTCCTGTTATAGCAAGTATCCTTTTCAATTCAATTAATATGTTTCAATTT
TTGCACCCTCAAAGGTCAGTTTTCAAATTATAAATGGTAAAGGATTAGAA
AAACGAACTTCTGGGAGAACAGCTTTGACCAATATCTTAACTATTTTTGC
CCTAAAATGAACAAAAAAAATAAGAAACAAAACGCGACCACTAAAATATG
CCCAAATTTTGTTAGAGTTTTCTCTACAGTGTAACGATCTAATTTGGAGA
CCCTTATTTTCTATTCCCACTCACGCGTGTACCCCTAGATAAAATCACTA
CCTATTGCTTACTTTTTGGTCAATTTCTGCTCGTTTTTTACAACTGTACA
ATAGTAGGAAGTTACACACTTTTTTGTGAGAACAAGTAAATTTTGGCTTA
TCCTGGGCTATTTTTAATTTCTTGAAATTTTAAGAATTGGGGCTTAATGT
TCTTACGATGTTCTTAATACGCTCAGTTTATTTACTTAAAATCTGCTAAA
ATCAGTACTTTTAAAGTAATTTCTGAAACCTGGGGCTTAGGCTTATTCTT
AATTGGTATTAGCCAATTTTCAACTTCATGCTCTTATAAAATTGCTCTCA
TAAAAAAGACATATATATTCTATGAATGTTCATTCTAGATTTTTGTTGTA
TTGTATTGTCTTTTTGTTTTGTGGGTTTTGTCTTTATTGTTTCCATTTTT
ATACTTCTAGACTATATAGGGCCCCTACATATATATATGGTGAAGATCAG
AGATCTGGCCTCAAGGAGAGCAAGTGTTGAAAATACTAAATGAAATAAAG
ATGAAACATAAAAAGGAACTAATATTTTTATAATTATACGTGTTTTTCTA
TTTTTTTCTATTTATACTCCATTAAATGATGTATTGTTGACTACTTTAAT
GGGATAAATTTTCGGGGGGATTAATTTTCGCGGATTTCGCGGATTTGGGT
GTCATCCGCGAAAATAAGTCCCATTGGAAATTTGAAAAAGGCCCATCCGC
GAAAATTAGTTTCCGCAAAAAATTTGAATTTTTTTTGCAATCCGCGAAAT
TTCTATTTTTGTCGTTTTTAATTTTTTTTCTACATGAGGGCACGCAACCC
TCGAAAAAGGTCAAATCCTCGATATGCTTGTTAGCAAAAAATCGTTTTCC
TCAAAATTTTCTTCACAAATTTACAAACTTGGAAGAGGTATTGGAAAAAT
CTTTATCTAAATCCTGTAAAAATTTTATTTCATNTATATTCTATGAATGT
TCATTCTAGATTTTTGTTGTATTGTATTGTCTTTTTGTTTTGTGAGTTTT
GTCTTTATTGTTTCCATTTTGAGTAGTTGAAGGTTTTATACTTCTTGACT
ATATATATATATGGTGAAGATCAGAGATCTGACCTCAAGGAGAGCAAGTG
TTGAAAATACTAAATAAAATAAAGATGAAACATAAAAAGCGACTAATATT
TTTATAATTATACGTGTTTTTCTATTTTTTCTATTTGTACTCCATTAAAT
GATGTATTGTTGACTATATATTTTGAGGCGTATTTTCGGTTCTGATGTTT
TCTTTGTATTCCTTAACAAAAATATTTACCAGCAATCATAACACAAGATG
AATTACAACACCCATCAGAAATGACGCCCCAGGGCGGGCCTTCCAAAGGC
ACCCTCATACTTGACAAACGCCCGTCGTCTCGTGAGATGTTACGCTCAAG
AAAAGAGTAAAAAAGTGCGGGAGTATGCTTTCAGGTTATCTTGTTAGAAG
ATGAGATGTATGTACAGGTATTATTTATTTATTTTGTTCATAGTGACTAA
CCATAGCGCTCTTAATCTTCAGACCTATCAAGTGTACACCAACTTCGATT
TTGTGAGGGCTCAATTTTATTTTCTGCAAATATTTGAAGATGCTGACGTC
ACTTCGTTAGCTATAAAACAGTGAGAAAAGTCGGAAGGGAGATAAGATTT
TGGTGAAAAAAGACGCATAAATAGACAAAAATCAACCATGACAGAACGAG
TACATTGGGAGCTTGTTTGTTAAAGATTTAGAACGCCATGTGACTAACAA
TATATATTTTCAGCACTTACGAGCATCTTCCAATATTTTCTATAGAAATC
ACCGAATGCTATAGTGCTCTATCCCATACATAAGTTATGGGGTGATTTAC
GTTGCTTGATTCCTCGTTAGGACAACATCAATTATATTCAATCAATGTGC
CCAAAAATGATATACTGAAGTGGAATTTTTAAGTATGAGTGGGCGAGATT
TCAAAAAAAAAATTTCTGACGTCAATTCCCACTCAAAGCACTTTTAAAAC
GGCCCGTCAAAAAACTTCAAGACCGTTCACTTTAGATAACTACAGTATTT
ATTTAAAAGGGTGGAGTCCATATTGAGGTCACAATTTGGCAATCTTTTTC
ACAAAACAGAACGTGAAGATTAATATAATTACCTCTAGTGTTTATTTTTG
GTCAAAACTTGTATAATAGCAAACTTTAGATTGTAAATATTTCAAATAAT
TTCGAATCTATTTTTTAACCAAACGTAAATAAACAAAGTTATTTTCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014593-exon-sc0000190-1575043694:198738..198843 | TCONS_00014593-exon-sc0000190-1575043694:198738..198843 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1575043694:198084..198338 | TCONS_00014593-exon-sc0000190-1575043694:198084..198338 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1575043694:195329..195476 | TCONS_00014593-exon-sc0000190-1575043694:195329..195476 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1575043694:192794..193761 | TCONS_00014593-exon-sc0000190-1575043694:192794..193761 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1510915933:198738..198843 | TCONS_00014593-exon-sc0000190-1510915933:198738..198843 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1510915933:198084..198338 | TCONS_00014593-exon-sc0000190-1510915933:198084..198338 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1510915933:195329..195476 | TCONS_00014593-exon-sc0000190-1510915933:195329..195476 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1510915933:192794..193761 | TCONS_00014593-exon-sc0000190-1510915933:192794..193761 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1491911889:198738..198843 | TCONS_00014593-exon-sc0000190-1491911889:198738..198843 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1491911889:198084..198338 | TCONS_00014593-exon-sc0000190-1491911889:198084..198338 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1491911889:195329..195476 | TCONS_00014593-exon-sc0000190-1491911889:195329..195476 | Clytia hemisphaerica | exon |
| TCONS_00014593-exon-sc0000190-1491911889:192794..193761 | TCONS_00014593-exon-sc0000190-1491911889:192794..193761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000190 | supercontig | sc0000190:192794..198843 - |
Blast
BLAST of TCONS_00014593 vs. Swiss-Prot (Human)
Match: SPG17 (Sperm-associated antigen 17 OS=Homo sapiens GN=SPAG17 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 6.559e-44 Identity = 87/187 (46.52%), Postives = 121/187 (64.71%), Query Frame = 2
Query: 2 SRSLMYDVAGSPRKGSVKTPSSILGSRPNAIPNEKFTNIEDPVRRQSKTASVYGSVDPESTSKLRGFILLPDVVDFGVLTEGYSYTHQVTMKNVGIDSCRYKIKQPPLSTGLKIIYQPGQVAAGMQVTFDVEIFAVAVGVESGSCGIGQISHHVEIISETDILYLPVIATIITQDELQHPSEMTPQG 562
++SL+ DVAG RK VK P +L S+P + P ++D V + T+SV + + S L GF LLP V FGVL EG++Y V +KNVG+D CR+K+KQPP STGLK+ Y+PG VAAGMQ ++E+FA AVG E G+ G ISH++EI++E ++L+LPV AT++T + PQG
Sbjct: 2013 TQSLLQDVAGQTRKEKVKLPHYLLSSKPKSQP---LAKVQDSVGGKVNTSSVASAAINNAKSSLFGFHLLPSSVKFGVLKEGHTYATVVKLKNVGVDFCRFKVKQPPPSTGLKVTYKPGPVAAGMQTELNIELFATAVG-EDGAKGSAHISHNIEIMTEHEVLFLPVEATVLTSSNYDKRPKDFPQG 2195
The following BLAST results are available for this feature:
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