TCONS_00014612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014612
Unique NameTCONS_00014612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014612 ID=TCONS_00014612|Name=TCONS_00014612|organism=Clytia hemisphaerica|type=transcript|length=337bp
CTTGAAATCGTGGCTTTGGCCCTGCACGCTCTATTACAATGGGTTATATT
CAAACTTCGTGTAACGGAAAATCAATATCATCTGGTTCGAATACTGTCAA
TATTTGATTCGATACACGCCATCTTGGCTATTTGCCAAGTATCTTACTTT
ATTGAATCGACTGTCAATGACACGCTACCTAACCAGACAGTAATGGTTTT
GTTGACAATGTCTGTATACATTTTTCATGCCTCACCAATGCTTATCACTG
TCTTGATAATCACCGACCGATGGATAGCTGTCAAATACCCTTTACGATAT
CAAGAACTCGTCTCCAAACTTAGAATCAACATTGCTG
Run BLAST on NCBI

protein sequence of TCONS_00014612-protein

>TCONS_00014612-protein ID=TCONS_00014612-protein|Name=TCONS_00014612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
LEIVALALHALLQWVIFKLRVTENQYHLVRILSIFDSIHAILAICQVSYF
IESTVNDTLPNQTVMVLLTMSVYIFHASPMLITVLIITDRWIAVKYPLRY
QELVSKLRINIA
Run BLAST on NCBI

transcript from alignment at sc0000190:461961..462297

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014612 ID=TCONS_00014612|Name=TCONS_00014612|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0000190:461961..462297 (Clytia hemisphaerica)
CAGCAATGTTGATTCTAAGTTTGGAGACGAGTTCTTGATATCGTAAAGGG
TATTTGACAGCTATCCATCGGTCGGTGATTATCAAGACAGTGATAAGCAT
TGGTGAGGCATGAAAAATGTATACAGACATTGTCAACAAAACCATTACTG
TCTGGTTAGGTAGCGTGTCATTGACAGTCGATTCAATAAAGTAAGATACT
TGGCAAATAGCCAAGATGGCGTGTATCGAATCAAATATTGACAGTATTCG
AACCAGATGATATTGATTTTCCGTTACACGAAGTTTGAATATAACCCATT
GTAATAGAGCGTGCAGGGCCAAAGCCACGATTTCAAG

Coding sequence (CDS) from alignment at sc0000190:461961..462297

>TCONS_00014612 ID=TCONS_00014612|Name=TCONS_00014612|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000190:461961..462297 (Clytia hemisphaerica)
AGCAATGTTGATTCTAAGTTTGGAGACGAGTTCTTGATATCGTAAAGGGT
ATTTGACAGCTATCCATCGGTCGGTGATTATCAAGACAGTGATAAGCATT
GGTGAGGCATGAAAAATGTATACAGACATTGTCAACAAAACCATTACTGT
CTGGTTAGGTAGCGTGTCATTGACAGTCGATTCAATAAAGTAAGATACTT
GGCAAATAGCCAAGATGGCGTGTATCGAATCAAATATTGACAGTATTCGA
ACCAGATGATATTGATTTTCCGTTACACGAAGTTTGAATATAACCCATTG
TAATAGAGCGTGCAGGGCCAAAGCCACGATTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008178XLOC_008178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014612-exon-sc0000190-1491911889:461961..462297TCONS_00014612-exon-sc0000190-1491911889:461961..462297Clytia hemisphaericaexon
TCONS_00014612-exon-sc0000190-1510915933:461961..462297TCONS_00014612-exon-sc0000190-1510915933:461961..462297Clytia hemisphaericaexon
TCONS_00014612-exon-sc0000190-1575043694:461961..462297TCONS_00014612-exon-sc0000190-1575043694:461961..462297Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014612-proteinTCONS_00014612-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000190supercontigsc0000190:461961..462297 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277167	0.270281	0.313822	0.307026	8.59682	9.74694	0.712683	1.33441	0.233563	0.289306	0	0.369183	0	0	0	0	0	0	0	0	0	0.392135	0	0	0	0.265585	0.380051	0	0.307633	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0194207TM_GPCR_serpentine_rcpt_Srbc
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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