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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014645 ID=TCONS_00014645|Name=TCONS_00014645|organism=Clytia hemisphaerica|type=transcript|length=874bp
GCGCTCTTGAGGACACTAATGTTTTAATGTTCTTCATAGTGAGAGGAATC
GTTCTCAACATGACCGTCCTATCCGTCAACACCTATATACGAACGTCATC
TATTCGAAATGTCGCCATCAATTATCCGTCATGTCGGAAAATGATTCATA
AATTTACAATACCTATTTGGATTTTAGCTGGTTTGTTGGCAGGTACTGGA
GTTATTTTAGAAGGAAAACTTTCAAGAAATTTTACCGAAGTTGTTATGAC
ACTTCTGTCCCCATTCTTCTTAGTAGTAATCATACTTAACATTCAACTTG
CTGTTTTCTTGCATAATCAAAAACGAGCCACAGCCATCACTTTAAACAGT
CAACCGAcctcaaaatcacaaaaaaacATCGGCACTGCAGAAAGTATCGT
CAATCGTGTAGTATACTTTCAAATCTTGTATTacattttatggattttaa
tTGTTGTGTTGATCAAATGTTTTGAAGAGAGACAGGGATTGTACACTTTG
TTTATTTGGATATCTCGCGTCACTTTCTTCTTATCTCTCATATTGGAATG
TAATGTTTTTATCGTATCCCGATGGAAACGATGTCGGACATTTTTACGAC
GTCTCGCGACGTGTTCTTCTTCCGATACCAATGATGATAACAGCAACATA
ACGTCAAATTTGACTCCGTCATATCGACGTCGTACAATGATGACGGACAT
CAGCAATCGATCAACGCCGGTGACAAGCCCAAGGCCTGATCATCGCCATG
AGATAGCATTCATACCATGAGTTTAAAAGTAGACTTCAGATGGGATATTA
TAGGGACAAGTTTCCTATGGAGCTTGCTTTTTCCTtataaattgtcattt
tgaaaacttCCTTCTCGCGCTGCA Run BLAST on NCBI protein sequence of TCONS_00014645-protein >TCONS_00014645-protein ID=TCONS_00014645-protein|Name=TCONS_00014645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
ALEDTNVLMFFIVRGIVLNMTVLSVNTYIRTSSIRNVAINYPSCRKMIHK
FTIPIWILAGLLAGTGVILEGKLSRNFTEVVMTLLSPFFLVVIILNIQLA
VFLHNQKRATAITLNSQPTSKSQKNIGTAESIVNRVVYFQILYYILWILI
VVLIKCFEERQGLYTLFIWISRVTFFLSLILECNVFIVSRWKRCRTFLRR
LATCSSSDTNDDNSNITSNLTPSYRRRTMMTDISNRSTPVTSPRPDHRHE
IAFIP Run BLAST on NCBI transcript from alignment at sc0000191:463155..464707- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014645 ID=TCONS_00014645|Name=TCONS_00014645|organism=Clytia hemisphaerica|type=transcript|length=1553bp|location=Sequence derived from alignment at sc0000191:463155..464707- (Clytia hemisphaerica)
GCGCTCTTGAGGACACTAATGTTTTAATGTTCTTCATAGTGAGAGGTTAG
TTTTTTGGCGGTCTTTACTTTATTATGCAGGGCCCTTCTGAGAAAACGTT
TGAAGATCTATACCATATGGAACCACCACTACGGGTCTCTTTCTAATGCA
TGGATCGTGGTATCCTGTCACGTAACGTAGCCCTGTTTTAGGGATAGCCG
TCACTGGCCGTTTTTACGATTAATTTGAAATCATTTTTCAGTAATAATCT
AAAATCTAATCAACATAAAATACAAAGATATCAACAAATATGGCTTGTAC
AAACTTAGCATCAGAAACACAACATGGATACGTTCTAATCGCACTTCAAA
TTTGCGTTCTGATTTTCTTCATTTTGGTTGTTCTGNCACGTCCTAATCGC
TCTTCAAATTTGCGTTCTGATTTTCTTCATTTTGGTTGTTCTGGTCTGCA
ATTCATTCACTCTGTATATAACACTCAAATCGTTACGCAAATGCTTCATC
AGCTCATTTTTCAATTTCAGTTACCTTGGTAACATAATAGCGGCTTTGTC
GTTATTTGGTGGTGATCTATACACGCTTTTCAAATGGAAAGGTTTGTACG
ACTGTACGCGAACTATCGATAGTCATTTCTTCCTTTACTTAGGAATCGTT
CTCAACATGACCGTCCTATCCGTCAACACCTATATACGAACGTCATCTAT
TCGAAATGTCGCCATCAATTATCCGTCATGTCGGAAAATGATTCATAAAT
TTACAATACCTATTTGGATTTTAGCTGGTTTGTTGGCAGGTACTGGAGTT
ATTTTAGAAGGAAAACTTTCAAGAAATTTTACCGAAGTTGTTATGACACT
TCTGTCCCCATTCTTCTTAGTAGTAATCATACTTAACATTCAACTTGCTG
TTTTCTTGCATAATCAAAAACGAGCCACAGCCATCACTTTAAACAGTCAA
CCGACCTCAAAATCACAAAAAAACATCGACACTGCAGAAAGTATCGTCAA
TCGTGTAGTATACTTTCAAATCTTGTATTACATTTTATGGATTTTAATTG
TNGAACATCGGCACTGCAGAAAGTATCGTCAATCGTGTAGTATACTTTCA
AATCTTGTATTACATTTTATGGATTTTAATTGTTGTGTTGATCAAATGTT
TTGAAGAGAGACAGGGATTGTACACTTTGTTTATTTGGATATCTCGCGTC
ACTTTCTTCTTATCTCTCATATTGGAATGTAATGTTTTTATCGTATCCCG
ATGGAAACGATGTCGGACATTTTTACGACGTCTCGCGACGTGTTCTTCTT
CCGATACCAATGATGATAACAGCAACATAACGTCAAATTTGACTCCGTCA
TATCGACGTCGTACAATGATGACGGACATCAGCAATCGATCAACGCCGGT
GACAAGCCCAAGGCCTGATCATCGCCATGAGATAGCATTCATACCATGAG
TTTAAAAGTAGACTTCAGATGGGATATTATAGGGACAAGTTTCCTATGGA
GCTTGCTTTTTCCTTATAAATTGTCATTTTGAAAACTTCCTTCTCGCGCT
GCA Coding sequence (CDS) from alignment at sc0000191:463155..464707- >TCONS_00014645 ID=TCONS_00014645|Name=TCONS_00014645|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0000191:463155..464707- (Clytia hemisphaerica)
ATCGGCACTGCAGAAAGTATCGTCAATCGTGTAGTATACTTTCAAATCTT
GTATTACATTTTATGGATTTTAATTGTTGTGTTGATCAAATGTTTTGAAG
AGAGACAGGGATTGTACACTTTGTTTATTTGGATATCTCGCGTCACTTTC
TTCTTATCTCTCATATTGGAATGTAATGTTTTTATCGTATCCCGATGGAA
ACGATGTCGGACATTTTTACGACGTCTCGCGACGTGTTCTTCTTCCGATA
CCAATGATGATAACAGCAACATAACGTCAAATTTGACTCCGTCATATCGA
CGTCGTACAATGATGACGGACATCAGCAATCGATCAACGCCGGTGACAAG
CCCAAGGCCTGATCATCGCCATGAGATAGCATTCATACCATGAGAATCGT
TCTCAACATGACCGTCCTATCCGTCAACACCTATATACGAACGTCATCTA
TTCGAAATGTCGCCATCAATTATCCGTCATGTCGGAAAATGATTCATAAA
TTTACAATACCTATTTGGATTTTAGCTGGTTTGTTGGCAGGTACTGGAGT
TATTTTAGAAGGAAAACTTTCAAGAAATTTTACCGAAGTTGTTATGACAC
TTCTGTCCCCATTCTTCTTAGTAGTAATCATACTTAACATTCAACTTGCT
GTTTTCTTGCATAATCAAAAACGAGCCACAGCCATCACTTTAAACAGTCA
ACCGACCTCAAAATCACAAAAAAACGCTCTTGAGGACACTAATGTTTTAA
TGTTCTTCATAGTGAGAGATCGGCACTGCAGAAAGTATCGTCAATCGTGT
AGTATACTTTCAAATCTTGTATTACATTTTATGGATTTTAATTGTTGTGT
TGATCAAATGTTTTGAAGAGAGACAGGGATTGTACACTTTGTTTATTTGG
ATATCTCGCGTCACTTTCTTCTTATCTCTCATATTGGAATGTAATGTTTT
TATCGTATCCCGATGGAAACGATGTCGGACATTTTTACGACGTCTCGCGA
CGTGTTCTTCTTCCGATACCAATGATGATAACAGCAACATAACGTCAAAT
TTGACTCCGTCATATCGACGTCGTACAATGATGACGGACATCAGCAATCG
ATCAACGCCGGTGACAAGCCCAAGGCCTGATCATCGCCATGAGATAGCAT
TCATACCATGAGAATCGTTCTCAACATGACCGTCCTATCCGTCAACACCT
ATATACGAACGTCATCTATTCGAAATGTCGCCATCAATTATCCGTCATGT
CGGAAAATGATTCATAAATTTACAATACCTATTTGGATTTTAGCTGGTTT
GTTGGCAGGTACTGGAGTTATTTTAGAAGGAAAACTTTCAAGAAATTTTA
CCGAAGTTGTTATGACACTTCTGTCCCCATTCTTCTTAGTAGTAATCATA
CTTAACATTCAACTTGCTGTTTTCTTGCATAATCAAAAACGAGCCACAGC
CATCACTTTAAACAGTCAACCGACCTCAAAATCACAAAAAAACGCTCTTG
AGGACACTAATGTTTTAATGTTCTTCATAGTGAGAGATCGGCACTGCAGA
AAGTATCGTCAATCGTGTAGTATACTTTCAAATCTTGTATTACATTTTAT
GGATTTTAATTGTTGTGTTGATCAAATGTTTTGAAGAGAGACAGGGATTG
TACACTTTGTTTATTTGGATATCTCGCGTCACTTTCTTCTTATCTCTCAT
ATTGGAATGTAATGTTTTTATCGTATCCCGATGGAAACGATGTCGGACAT
TTTTACGACGTCTCGCGACGTGTTCTTCTTCCGATACCAATGATGATAAC
AGCAACATAACGTCAAATTTGACTCCGTCATATCGACGTCGTACAATGAT
GACGGACATCAGCAATCGATCAACGCCGGTGACAAGCCCAAGGCCTGATC
ATCGCCATGAGATAGCATTCATACCATGAGAATCGTTCTCAACATGACCG
TCCTATCCGTCAACACCTATATACGAACGTCATCTATTCGAAATGTCGCC
ATCAATTATCCGTCATGTCGGAAAATGATTCATAAATTTACAATACCTAT
TTGGATTTTAGCTGGTTTGTTGGCAGGTACTGGAGTTATTTTAGAAGGAA
AACTTTCAAGAAATTTTACCGAAGTTGTTATGACACTTCTGTCCCCATTC
TTCTTAGTAGTAATCATACTTAACATTCAACTTGCTGTTTTCTTGCATAA
TCAAAAACGAGCCACAGCCATCACTTTAAACAGTCAACCGACCTCAAAAT
CACAAAAAAACGCTCTTGAGGACACTAATGTTTTAATGTTCTTCATAGTG
AGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014645-exon-sc0000191-1575043694:464663..464707 | TCONS_00014645-exon-sc0000191-1575043694:464663..464707 | Clytia hemisphaerica | exon |
| TCONS_00014645-exon-sc0000191-1575043694:463734..464065 | TCONS_00014645-exon-sc0000191-1575043694:463734..464065 | Clytia hemisphaerica | exon |
| TCONS_00014645-exon-sc0000191-1575043694:463155..463651 | TCONS_00014645-exon-sc0000191-1575043694:463155..463651 | Clytia hemisphaerica | exon |
| TCONS_00014645-exon-sc0000191-1510915933:464663..464707 | TCONS_00014645-exon-sc0000191-1510915933:464663..464707 | Clytia hemisphaerica | exon |
| TCONS_00014645-exon-sc0000191-1510915933:463734..464065 | TCONS_00014645-exon-sc0000191-1510915933:463734..464065 | Clytia hemisphaerica | exon |
| TCONS_00014645-exon-sc0000191-1510915933:463155..463651 | TCONS_00014645-exon-sc0000191-1510915933:463155..463651 | Clytia hemisphaerica | exon |
| TCONS_00014645-exon-sc0000191-1491911889:464663..464707 | TCONS_00014645-exon-sc0000191-1491911889:464663..464707 | Clytia hemisphaerica | exon |
| TCONS_00014645-exon-sc0000191-1491911889:463734..464065 | TCONS_00014645-exon-sc0000191-1491911889:463734..464065 | Clytia hemisphaerica | exon |
| TCONS_00014645-exon-sc0000191-1491911889:463155..463651 | TCONS_00014645-exon-sc0000191-1491911889:463155..463651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000191 | supercontig | sc0000191:463155..464707 - |
Blast
The following BLAST results are available for this feature:
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