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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014647 ID=TCONS_00014647|Name=TCONS_00014647|organism=Clytia hemisphaerica|type=transcript|length=1838bp
aaaaaaatatatatagggaAATACCCACTCGACctaaatttttcgatgac
cggcAAATCGCCACGTAATTTCATAAACAAACGTGGTCGGGCTCACTAGA
AGATATTTGGTTTTAGTAATCGTAAGACCGTTTGGCCACGGAAAATTAGC
ATTTGATTTACTCATGGCGTCCTCGCAGTGCGGATGATTTTGAGTCAAAG
TGCAAAAGCTGTTTGGTTAGGACTGGCAGCAGCAAACAAAATGGAacagt
ttttgtttgttttatttattgCATCTAGTTTTATAACGGTCCATTCGGTA
GAATTGACTTTTGAATTGGAAGATAATGCCAGAGAATGTTTCCACGAAAC
CATtgtcaacaaaacaaaatgtacACTTGAGTTTCAGGTTGTAACTGGTG
GTCATTATGACGTAGATGTGATAGTTAAAGATCCCCATGGGAAAATATTA
TatgatgaaaagaagaaacaatATGACAGTGTCAACTTTGATGCTGAAGT
TCTAGGTGAATACGTATTTTGTTACAGTAACGAATTCTCCTCATTCAGTC
ATAAAAccatttattttgatttcaacCATGGTAACGAGGACCCGCTCACC
CCTGGTATCGGCTCTCAGCATACGGCCTTAACACAAATTGAGACGTCATC
GGTCCAGATTCACGAATCGTTAAATGTTATTATCGATTATCAAACACATC
ATCGGTTAAGAGAGGCAACTTCTAGGGATAATGCTGAATATTTGAATGAA
CGAGTCCAATATTGGTCTATAGGACAAGCTGTTATAATTTTAATTGTCTC
GCTTGTTCAAGTTTTTGTATTGAAGAATTTCTTTGCAGAGAAAAGGGACC
GGATTTGATATGCGTTTTTCTGGAAGATGATTGatttagaatttatttat
ttgttataCTTTGTTcattaaatagagtttttttattattgttgtCTACT
TCAGTAAACTTCCGTTGTCTTGATGCTTTTTTTAACTAGAGATTTCTTAT
TTGGGTTATTTTACTTTTGGACAGTATATATAAACAAACGCTTTGAAGAT
TAAAAAgcagaaaattaaaaacatagCCTGAAACTATTTCGTCTTATTTT
TAACAAAGATTTTTACTCTTATTTACTACTAGCTAAGATATTCCAGATAT
TTTTCATTCCATAgcttttatatattatattactACAATTCGGAGAAAGC
AAAAACGAAGTATTTTACACCGATTCACAGTTCTGAAAATGTAGCAattg
attacacgtttttttataagaacaaactatataagaacatgggGCTtagc
tggccaaaatgttaagaacattttaaggctttgtggactcaaaaacaccc
catttcttgggaaaattggcaaaaatattcacaaaattgtcgatataaga
acatgttaagaacatttttcggcttaaaactaaaaaagttcagaacatcc
caaggctttgaaaatttgtgatgtgttcttataaaaaaaacgtgtaccat
tTGAACCTGCACTTATGAAAAGAGAACTGGTGGATTTTCCTAAGTTTATC
TCATTGAGCAATGAGCatatttctaattttgaccTGGTGGAttcttttta
aagcattttttgtgaTGTTGTGATTGCTTGAGTTTTGGTCCGGTGTTTGG
AGGGGACTTTCATTCATATtgtcaaagtttttgttttctgtATTGTTGAt
atttatataattattatagagagaattttttatgcaagaataattttcaa
aaaatgaatttgattttaCTGTATTTTACTTTTCAATCGCTTTGTCAGTG
AAACTGAACCATTTTAAATACCAGTTTTTTTacgagcc Run BLAST on NCBI transcript from alignment at sc0000191:470940..476839- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014647 ID=TCONS_00014647|Name=TCONS_00014647|organism=Clytia hemisphaerica|type=transcript|length=5900bp|location=Sequence derived from alignment at sc0000191:470940..476839- (Clytia hemisphaerica)
AAAAAAATATATATAGGGAAATACCCACTCGACCTAAATTTTTCGATGAC
CGGCAAATCGCCACGTAATTTCATAAACAAACGTGGTCGGGCTCACTAGA
AGATATTTGGTTTTAGTAATCGTAAGACCGTTTGGCCACGGAAAATTAGC
ATTTGATTTACTCATGGCGTCCTCGCAGTGCGGATGATTTTGAGTCAAAG
TGCAAAAGCTGTTTGGTTAGGACTGGCAGCAGCAAACAAAATGGAACAGT
TTTTGTTTGTTTTATTTATTGCATCTAGTTTTATAACGGTCCATTCGGTA
GAATTGACTTTTGAATTGGAAGATAATGCCAGAGAATGTTTCCACGAAAC
CATTGTCAACAAAACAAAATGTACACTTGAGTTTCAGGTATAAAAGCTTT
TATACTGTACACTTTTTTGCTTCATACTTGCCCTATAACAACTTTTTTTT
ACTAAGCTCTACTCATCAAGTTCTGTCATTATTCTCTGTTTGAATCTTTT
TCTAAAAATTTTTTAAGCACACCCTTGACCCAATGTTATAAGATAAACCA
GACGGTACTAATCGAACATTCGATAATTAATTGTGATCGAAGTATCTAAT
CAATAATGATCGATAATAATCGAAGTTGGTCAGTGACCACCTATCGGTTT
TATCGGTGATCAAATATTCACTCGACTCCAGATTATGGCATTTTCTTCTC
AACCATTTTCAATTACAATTTGCTCAATCATTACGATTACTTTTCGAATA
CCTTTGATCATATTGAATACCTTAGATTGTATTGAGTACCGTGAGATCGG
CTAACTTGCATCAGTGGAGGCTAACATGCATAGTTAGAGACAGGAGTAAT
AGGAAAGCTTGAATCACTGATTGAAAAAGGATTATTCCTCTCTGACACTA
CTAACCAAAGAAAAACTGTTTTGACCTTTCTATCAATTTCAGCTGATAAA
TAAAAGGTAGCCTGGATATCCAAGCTCAAAATTTTAGAAAAAACAAAAAT
TACCTCAGCATACAAAGTTCTAAAATTATAGAGCTTGGTCTCCCTAAAGA
ATGAAAGTGCAAACCCATGTTTCCTAGCCAACCCAGGGCAGCAAAAAAGA
AATTAATAAAAAGCAGTCTTACAAGATCTAACACTATTTAAAACATCCAA
AGATTACACCAAAGTCCATAAAAAAGTTTGCATGCATTATCATGACCAAC
CATGTTTTCTTGGAAAATGAACTGGCCTCTGTTTTCTTCTTTTTCATGTT
TTCATGTAACAGAAAGCCCTATCTTCACTAGCAACTGGAGGACTATCCTT
TTTTTGATTTAGAATTGCTCCACGCCGTGTAGATTGGCCCTTACGGTTTT
AGCGAAGTGAGCACAAGCAAGCGGATTGCATTCTCTTTAAGAGAATGCAA
ATCGCTCTAGGGAGACCAAGCTGTAAACCAGAACATAAAATATCAAAACT
AGACTGTGAAATAGTTTACAGCCTGGATATCCAGGCTAATAAAAAGGGTG
TCGGAATTAGAGGAGGGGTGTCAACATTAGACCAAGTTACGGTAAATGAC
CTGGCTGGTCATTAAAATACATAAAGTTAAATCAAAACAAAAATGGTAGA
GTAGAGCTGCGAGAGGAGCTGCGTAATTTCATTTGTTTTGAAATTTTGCT
GGTTTAATTGGTCAGTCATTCGATAGCTATGGTATGCAAGTTTCCCTCAA
CTGATACAAGTTACCCAACTTCACGGTGCTTTCCAGCCTTCAATTTTATC
AAATATGTTTCCAGTAGCAGCGCATCAAAATAATCTAAAACCAAGTTTAC
TTCGGCCAATCAAAACACGCGATTCATGTGCAAAAACCACTTTCGTTTTC
ACCGACCAATCAGAATGCATGATATGAGTTATTTGGGGCAGGAAACCCAG
GGCGAAGGCACACAAAATGGCAGGGAAATAAGGGGGTCAATCTTTATGGC
AGGGCTTCTTTTTGTGCTTTGGTTTTTGTCACTCGCGCGACAAATTATAC
ACTCGTTATTTGTTGATTCCATTGGGCGATAGGCGGTTAGGCGACGGGCG
TTCTCTAATTCTCCAATCGGCGTCCGGTCATTTTGAATGAAAACAACAAA
AAAACTTGCCATCTTTACAAAAATTGTATTTTTGATTTTTCAAACATTCG
TCTTAAGCGTTCACTTCCACAATAATTTCAAGTAATTGTTATGTAATTCC
ACTTTCAATTAGTCGGGTTCATCATATAGACGCACACTGTTCTGGGGGTA
AGTGTTGTTGAAGCAATACAGATTATTCTTAAAGAGATTCCTATTACGAA
TAGAACAATTGAGAACATCGTAAGAACATTCAGGAACATTTAAGCATGAA
AATTTCAAAAAATTAAGAACAGCCCAGCCTGTGTGCCAAAATTTTCTGTT
AAAAAAAAGCATGTAATTTGTTAAGAAATGCAGAGGGGCAAGTGCTCATA
AAGTCCTCCAAAATTTTGAATATCTGCATGATAAAAGGACAAGTTGTTTG
GATCCTACAATTCTTGTCACAAAGTTTTGGCTATAACAATACATTTTTCC
CTCACTGATTTTTTAAAGGTTGTAACTGGTGGTCATTATGACGTAGATGT
GATAGTTAAAGATCCCCATGGGAAAATATTATATGATGAAAAGAAGAAAC
AATATGACAGTGTCAACTTTGATGCTGAAGTTCTAGGTTTGTGACTTTTT
GTTGTTTTTTTGCACTGGTCCCCTGGCCGAAAATGAGATTTCCTTTTCTT
CACATCATTTGATGCTAATATAATCAGTGCTAACTCAATTAAAATGATCC
AATTTTCTTTAATTGGATACCGTAGATTTAGATAATTTGAACTTGTGGTA
TTGTTTTAACTCCTGTCTGATTAGTATAATAGTAGCTTCTTAATAAAACT
ATTGTCAAGTATTCTAGTGTTTTTTAGCTGCAATCCTATTTATTCAGCAA
TTTCATTAAAATATTATAGTAATCAAACGATCTTGAAGGCTTGCCTGAAA
TTGTCTCTTGGGTTGTGCATATATTGTATCTAATTTGCTAGCCCCCCTAA
CAATAAAAGTTCTTTTCGGATTTTTCTTAACCTCCCTTGGACTGTCATGG
CTAGCCTTCAGGGCCATTTTAGAAATGTACTATTTTCAAAATGTAAATAA
ATTATCTTGATAACCACTGATTTTTCTGAATGCTGAATCCAAGAGACAAC
ATAATTAACATAATGAGAGGCAAGCTTTCAAGGTGTTCAAGAAAACCACC
ATGTCTCTTTTCAGGGGAATACGAGTTTTGCTTCAGTAATGAGTTCTCAA
GCTACAGTCACAAAACCATTTACATGGACTTCCAAGACGGCAGTAAAGAA
CCCCCTCTACCTATCGGGCGAGGTCGAGGAATGGATGAAGGTCAATATTC
CTTAACCCTCATTGAGTCATCAGCTGTACAAATTCATGAATCATTGAACA
CTATTATTGATTATCAAACACACCATCGTTTAAGAGAAGCCAAATCAAGA
AGCTTAGCTGAATACATTTTTGAACGTGTGAACTATTGGTCTATTGGTCA
AACTTTGATCATGTTGGGCATGTCACTCTTACAGGTGTTCACGTTGAAAA
GGTTATTCACTGAAAAACGAGATCGAATTTGAAAGAAATGACGTAATTCG
GCTTACACACACAATTTACTGAAAGATTAACCGAAAAACTTTATTTCATA
TGGTCGATGTTCCGGTTTGGATCAGTCTTTGGTAAACCTCTGGAGGATAC
CTATGTGTAATTTGAAGTGATGTTGATGTTGATTGGAAAGGTGTTTTTAA
TAAAATTCTAGACTGTTAGACAAATTTTTATACATTTTAGTTTCTCATTG
TTCTTATGCTTCTTGTAGTTATGTATCTCTCCATGTAATTCAATTTTGAA
GTTCTGGCGTTTTCCACTTCGATTTTCTCTTCAGCTTCATAAATATTGTG
ACTACCATTGTTAAATGGGTATGAAAATACCTATCAAGCTTTTCAATAGC
GTACTTTTGTAGACCTTGTTTGGCCACCACCTTTCTAACTAGACTCAGGT
TTTAAATTATTTTATTTTTGTTATAATTAGAGGTGGTTTTTATGTTGCTT
TTGATATTTTGAAAGATTCATTTTTAAAAACATTTTCACGATCAGCCAAG
AATTTCACCTGAATGTCTCTCGTGCAGAGAAAACTTTATCAACTAAGAGA
AATAATTCTGAGATTCTTGGCTGGGCTGTATATTTCATTTTTTTGTAAAC
TTTTTATGTAAAAATTTCAAAGTTATATCAAATATATACGAGAAAATCTT
TAAAAAGTTATTTCAAAGTGTGAATGTGGTGTGAATGTCCTTGAAGAATT
TTATTTTCTTATTGATTTGAGATTTTTTTTTATTTTTTAAGAATTTTCAC
ACTGTTTGTTTGTCACACTTTGCATTTCGTATTGTCGGTTTCTATTGATC
TACCTATGCTAGTATTACATAAGATGTTTTTAAAAAATTGAGTAAACTCT
AATAATATGACAGAAGCCTTCTGTACTACACAGCCCTACAAATGACCCAT
CATTTCTTTAATTTTAGGTGAATACGTATTTTGTTACAGTAACGAATTCT
CCTCATTCAGTCATAAAACCATTTATTTTGATTTCAACCATGGTAACGAG
GACCCGCTCACCCCTGGTATCGGCTCTCAGCATACGGCCTTAACACAAAT
TGAGACGTCATCGGTCCAGATTCACGAATCGTTAAATGTTATTATCGATT
ATCAAACACATCATCGGTTAAGAGAGGCAACTTCTAGGGATAATGCTGAA
TATTTGAATGAACGAGTCCAATATTGGTCTATAGGACAAGCTGTTATAAT
TTTAATTGTCTCGCTTGTTCAAGTTTTTGTATTGAAGAATTTCTTTGCAG
AGAAAAGGGACCGGATTTGATATGCGTTTTTCTGGAAGATGATTGATTTA
GAATTTATTTATTTGTTATACTTTGTTCATTAAATAGAGTTTTTTTATTA
TTGTTGTCTACTTCAGTAAACTTCCGTTGTCTTGATGCTTTTTTTAACTA
GAGATTTCTTATTTGGGTTATTTTACTTTTGGACAGTATATATAAACAAA
CGCTTTGAAGATTAAAAAGCAGAAAATTAAAAACATAGCCTGAAACTATT
TCGTCTTATTTTTAACAAAGATTTTTACTCTTATTTACTACTAGCTAAGA
TATTCCAGATATTTTTCATTCCATAGCTTTTATATATTATATTACTACAA
TTCGGAGAAAGCAAAAACGAAGTATTTTACACCGATTCACAGTTCTGAAA
ATGTAGCAATTGATTACACGTTTTTTTATAAGAACAAACTATATAAGAAC
ATGGGGCTTAGCTGGCCAAAATGTTAAGAACATTTTAAGGCTTTGTGGAC
TCAAAAACACCCCATTTCTTGGGAAAATTGGCAAAAATATTCACAAAATT
GTCGATATAAGAACATGTTAAGAACATTTTTCGGCTTAAAACTAAAAAAG
TTCAGAACATCCCAAGGCTTTGAAAATTTGTGATGTGTTCTTATAAAAAA
AACGTGTACCATTTGAACCTGCACTTATGAAAAGAGAACTGGTGGATTTT
CCTAAGTTTATCTCATTGAGCAATGAGCATATTTCTAATTTTGACCTGGT
GGATTCTTTTTAAAGCATTTTTTGTGATGTTGTGATTGCTTGAGTTTTGG
TCCGGTGTTTGGAGGGGACTTTCATTCATATTGTCAAAGTTTTTGTTTTC
TGTATTGTTGATATTTATATAATTATTATAGAGAGAATTTTTTATGCAAG
AATAATTTTCAAAAAATGAATTTGATTTTACTGTATTTTACTTTTCAATC
GCTTTGTCAGTGAAACTGAACCATTTTAAATACCAGTTTTTTTACGAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014647-exon-sc0000191-1575043694:476453..476839 | TCONS_00014647-exon-sc0000191-1575043694:476453..476839 | Clytia hemisphaerica | exon |
| TCONS_00014647-exon-sc0000191-1575043694:474154..474271 | TCONS_00014647-exon-sc0000191-1575043694:474154..474271 | Clytia hemisphaerica | exon |
| TCONS_00014647-exon-sc0000191-1575043694:470940..472272 | TCONS_00014647-exon-sc0000191-1575043694:470940..472272 | Clytia hemisphaerica | exon |
| TCONS_00014647-exon-sc0000191-1510915933:476453..476839 | TCONS_00014647-exon-sc0000191-1510915933:476453..476839 | Clytia hemisphaerica | exon |
| TCONS_00014647-exon-sc0000191-1510915933:474154..474271 | TCONS_00014647-exon-sc0000191-1510915933:474154..474271 | Clytia hemisphaerica | exon |
| TCONS_00014647-exon-sc0000191-1510915933:470940..472272 | TCONS_00014647-exon-sc0000191-1510915933:470940..472272 | Clytia hemisphaerica | exon |
| TCONS_00014647-exon-sc0000191-1491911889:476453..476839 | TCONS_00014647-exon-sc0000191-1491911889:476453..476839 | Clytia hemisphaerica | exon |
| TCONS_00014647-exon-sc0000191-1491911889:474154..474271 | TCONS_00014647-exon-sc0000191-1491911889:474154..474271 | Clytia hemisphaerica | exon |
| TCONS_00014647-exon-sc0000191-1491911889:470940..472272 | TCONS_00014647-exon-sc0000191-1491911889:470940..472272 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000191 | supercontig | sc0000191:470940..476839 - |
Blast
BLAST of TCONS_00014647 vs. Swiss-Prot (Human)
Match: TMED7 (Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2) HSP 1 Score: 241.891 bits (616), Expect = 7.716e-75 Identity = 111/182 (60.99%), Postives = 142/182 (78.02%), Query Frame = 1
Query: 301 ELTFELEDNARECFHETIVNKTKCTLEFQVVTGGHYDVDVIVKDPHGKILYDEKKKQYDSVNFDAEVLGEYVFCYSNEFSSFSHKTIYFDFNHGNEDPLTPGIGSQHTALTQIETSSVQIHESLNVIIDYQTHHRLREATSRDNAEYLNERVQYWSIGQAVIILIVSLVQVFVLKNFFAEKR 846
E+TFEL DNA++CF+E I TKCTLEFQV+TGGHYDVD ++DP GK+LY E KKQYDS F A G Y FC+SNEFS+F+HKT+YFDF G + PL P ++ +ALTQ+E++ V IHE+L +IDYQTH RLREA R AE LN RV YWS+G+A+I+L+VS+ QVF+LK+FF++KR
Sbjct: 36 EITFELPDNAKQCFYEDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPS-ENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKR 216
The following BLAST results are available for this feature:
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