TCONS_00014677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014677
Unique NameTCONS_00014677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014677 ID=TCONS_00014677|Name=TCONS_00014677|organism=Clytia hemisphaerica|type=transcript|length=1822bp
ACTAAGCTTGAAAGTAGTCAACACATCAAGTTTTGTATGAAATAGGAAGT
ATAAGGAAAAGGTGAAAACCTGGTGTCGACTACACCTTTATAAACagtga
aaaaaatatcattacTTTCATTGTAAAAGCATCATCGTGCTGTACATgtc
aaagtttttatgattttaggaGGAGCGTTCATTCGAGGATGgcgtttaaa
aaagggggcTTTTTTATTGAATTATCCTTAACTAAAGTCACTTTCTTCGT
TATCTTTCAGTTCAAATTATGTCATTTTAAAGATGTAAATGGGTCAAAAT
GAGTTTAAATAAATACTGAAAGAATACAATTATAAACACATATTTAAGTT
TTTCTTCATGTAACTCGCCCTCACAGCTACTTGACTCGAGCAAACGCCCC
TCCTAGAGGGGAGGCgattattcgaagtaatacggtatgtcACGTTCTAT
TTCATGCAGGCTTGTTTCGTTTCTTAGTTAAAAATAtcacaaatcaaaaa
aattcacaatggtATCAAAAGCTGGAATCATAGCTATCATATTCTCAGGT
CTTGCTTTCATTTTTGGGTTTACTTCGATAGTTGATAATGATTGGTTGCA
TTCGAAATCTACAATTAACGGCGTTTTGATTTCTGAATTCACTGCTAGTA
TGTGGGAAAGTTGCATTAGATTCAGTGGCCAACCAACTGAGTGTTCAGCT
AACAACCTCCCATGGGATTGGCTGAAAGCTGCTCAAGGTTTTCTTGTGAT
TGGCACCATCTTTAGTTTCGCAAGTCTCCTAGCAACCATGATTGTCGTGT
TCAAGCAGAAAATGAAACCTATCATTCCACCCATAATGCAATGAAAACGA
CAATCATGGTTGCAAGTCTCCTAGCAACCATGATTGTCGTGTTCAAGCAG
AAAATGAAACCTATCATTCCACCCATAATGCAATTCATCACTGCCGGATT
TATATTCATTGGattgattgttttcattagCAACAAAGAAGGAAATGAGG
ATTCGGAGTTTGTAAGATGGGCTTGGTATGGTCGAGATTTTTATTTGTCT
TGGGCTGGATGGTTATTTTCAGTTGTAGCAGGTTGTGTGAGTGTATGTGG
ATGCAGATGTATCACTACTACCGCTTTGACGGAGTAGAAAAACCGCTCCT
AAACGTGGCGTGGAGCTGTGTAATACCGTTTGTGATTTGAATACAGGTGT
ATGATGTAATTTAGGCttagaaaacttttgtaaaCGATTGTATTCCTTTA
AAAGTGAGGTTGGGTAAAGAGACAAAGACACATACTGTAcccaaaaatag
aaaattatatGTATTTTAGTGTAATTATTTGtgtaaaaattttgtatttt
ttaaattatttttttaaagtttttcctttatttcctttgtttttactcGC
TGAAAGAGAtataaaacaagacgacttgaagtcgaaaatttcgcctagga
tttgaactacatgggaaaaacaagaagtagatgaagctaatctgaaatct
actttacatcgagccttgatgaaacaattttacaacaagaaccAATTTTa
gaacaattgttgtttaatttttaagaactctcataaagtatatgcttata
aaaaatagatatgctcttattgcacgccatcccttgtttactttgtaaga
actaattaccgaaaggtatatcaccgtctatcaagagttattgatttgat
tctcataaagtaaatgcttataagaaaaaaaaatatgctcatattgtaca
ccaacccttgtttactttgtaagaactaattaccgaaaggtatatcaccg
tctatcaagagttattgatttg
Run BLAST on NCBI

protein sequence of TCONS_00014677-protein

>TCONS_00014677-protein ID=TCONS_00014677-protein|Name=TCONS_00014677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MVSKAGIIAIIFSGLAFIFGFTSIVDNDWLHSKSTINGVLISEFTASMWE
SCIRFSGQPTECSANNLPWDWLKAAQGFLVIGTIFSFASLLATMIVVFKQ
KMKPIIPPIMQ
Run BLAST on NCBI

transcript from alignment at sc0000197:156324..158201+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014677 ID=TCONS_00014677|Name=TCONS_00014677|organism=Clytia hemisphaerica|type=transcript|length=1878bp|location=Sequence derived from alignment at sc0000197:156324..158201+ (Clytia hemisphaerica)
ACTAAGCTTGAAAGTAGTCAACACATCAAGTTTTGTATGAAATAGGAAGT
ATAAGGAAAAGGTGAAAACCTGGTGTCGACTACACCTTTATAAACagtga
aaaaaatatcattacTTTCATTGTAAAAGCATCATCGTGCTGTACATgtc
aaagtttttatgattttaggaGGAGCGTTCATTCGAGGATGgcgtttaaa
aaagggggcTTTTTTATTGAATTATCCTTAACTAAAGTCACTTTCTTCGT
TATCTTTCAGTTCAAATTATGTCATTTTAAAGATGTAAATGGGTCAAAAT
GAGTTTAAATAAATACTGAAAGAATACAATTATAAACACATATTTAAGTT
TTTCTTCATGTAACTCGCCCTCACAGCTACTTGACTCGAGCAAACGCCCC
TCCTAGAGGGGAGGCgattattcgaagtaatacggtatgtcACGTTCTAT
TTCATGCAGGCTTGTTTCGTTTCTTAGTTAAAAATAtcacaaatcaaaaa
aattcacaatggtATCAAAAGCTGGAATCATAGCTATCATATTCTCAGGT
CTTGCTTTCATTTTTGGGTTTACTTCGATAGTTGATAATGATTGGTTGCA
TTCGAAATCTACAATTAACGGCGTTTTGATTTCTGAATTCACTGCTAGTA
TGTGGGAAAGTTGCATTAGATTCAGTGGCCAACCAACTGAGTGTTCAGCT
AACAACCTCCCATGGGATTGGCTGAAAGCTGCTCAAGGTTTTCTTGTGAT
TGGCACCATCTTTAGTTTCGCAAGTCTCCTAGCAACCATGATTGTCGTGT
TCAAGCAGAAAATGAAACCTATCATTCCACCCATAATGCAATGAAAACGA
CAATCATGGTTGCAAGTCTCCTAGCAACCATGATTGTCGTGTTCAAGCAG
AAAATGAAACCTATCATTCCACCCATAATGCAATTCATCACTGCCGGATT
TATATTCATTGGattgattgttttcattagCAACAAAGAAGGAAATGAGG
TTTCGGATTTGGTAAGATGGGCTTGGTATGGTCGAGATTTTTATTTGTCT
NCGAGGATTCGGAGTTTGTAAGATGGGCTTGGTATGGTCGAGATTTTTAT
TTGTCTTGGGCTGGATGGTTATTTTCAGTTGTAGCAGGTTGTGTGAGTGT
ATGTGGATGCAGATGTATCACTACTACCGCTTTGACGGAGTAGAAAAACC
GCTCCTAAACGTGGCGTGGAGCTGTGTAATACCGTTTGTGATTTGAATAC
AGGTGTATGATGTAATTTAGGCttagaaaacttttgtaaaCGATTGTATT
CCTTTAAAAGTGAGGTTGGGTAAAGAGACAAAGACACATACTGTAcccaa
aaatagaaaattatatGTATTTTAGTGTAATTATTTGtgtaaaaattttg
tattttttaaattatttttttaaagtttttcctttatttcctttgttttt
actcGCTGAAAGAGAtataaaacaagacgacttgaagtcgaaaatttcgc
ctaggatttgaactacatgggaaaaacaagaagtagatgaagctaatctg
aaatctactttacatcgagccttgatgaaacaattttacaacaagaaccA
ATTTTagaacaattgttgtttaatttttaagaactctcataaagtatatg
cttataaaaaatagatatgctcttattgcacgccatcccttgtttacttt
gtaagaactaattaccgaaaggtatatcaccgtctatcaagagttattga
tttgattctcataaagtaaatgcttataagaaaaaaaaatatgctcatat
tgtacaccaacccttgtttactttgtaagaactaattaccgaaaggtata
tcaccgtctatcaagagttattgatttg

Coding sequence (CDS) from alignment at sc0000197:156324..158201+

>TCONS_00014677 ID=TCONS_00014677|Name=TCONS_00014677|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000197:156324..158201+ (Clytia hemisphaerica)
atggtATCAAAAGCTGGAATCATAGCTATCATATTCTCAGGTCTTGCTTT
CATTTTTGGGTTTACTTCGATAGTTGATAATGATTGGTTGCATTCGAAAT
CTACAATTAACGGCGTTTTGATTTCTGAATTCACTGCTAGTATGTGGGAA
AGTTGCATTAGATTCAGTGGCCAACCAACTGAGTGTTCAGCTAACAACCT
CCCATGGGATTGGCTGAAAGCTGCTCAAGGTTTTCTTGTGATTGGCACCA
TCTTTAGTTTCGCAAGTCTCCTAGCAACCATGATTGTCGTGTTCAAGCAG
AAAATGAAACCTATCATTCCACCCATAATGCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008218XLOC_008218Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014677-proteinTCONS_00014677-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014677-exon-sc0000197-1491911889:156324..157322TCONS_00014677-exon-sc0000197-1491911889:156324..157322Clytia hemisphaericaexon
TCONS_00014677-exon-sc0000197-1510915933:156324..157322TCONS_00014677-exon-sc0000197-1510915933:156324..157322Clytia hemisphaericaexon
TCONS_00014677-exon-sc0000197-1575043694:156324..157322TCONS_00014677-exon-sc0000197-1575043694:156324..157322Clytia hemisphaericaexon
TCONS_00014677-exon-sc0000197-1491911889:157379..158201TCONS_00014677-exon-sc0000197-1491911889:157379..158201Clytia hemisphaericaexon
TCONS_00014677-exon-sc0000197-1510915933:157379..158201TCONS_00014677-exon-sc0000197-1510915933:157379..158201Clytia hemisphaericaexon
TCONS_00014677-exon-sc0000197-1575043694:157379..158201TCONS_00014677-exon-sc0000197-1575043694:157379..158201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:156324..158201 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86028	1.40556	3.65573	4.39869	2.96209	1.45474	2.44551	2.91078	4.57351	15.618	8.04546	5.25008	109.487	35.5347	4.27527	7.6108	5.64383	5.46304	11.7036	49.2052	14.3127	13.6377	68.4046	61.9297	170.398	107.805	99.2867	158.206	11.2802	7.18882
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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