TCONS_00014679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014679
Unique NameTCONS_00014679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014679 ID=TCONS_00014679|Name=TCONS_00014679|organism=Clytia hemisphaerica|type=transcript|length=873bp
GGAAAAAGGGAAATGAAGATAATATGattatgtaaaaaaatattgctttt
tattaaatttgttttaaagttaAGAGATGATGAAAAAGATATTCACTATT
TTGCTGTTCTTTGAACAATATATCATTACTGAGACATCAAAACTGGATAC
ATGTGGCTATGCTGATAATCCATCTGATCAATATGATTTCAAAACTGATA
AATGGTTTCACATTGGGCAATTGTATTCTTATTGTATGCAGCCTGGAAAT
TTGACCACTTTTGATGCAGATTGCAAAACTACTGAATGTAAAAACTGTAT
GAAAGCATGCCCAAATGGAGATTTTAACTTGGCAGCTTGCATCTCCGAGT
GCAACTCAAACGAGCACTGCATCAATGGATGCAAATTCTTCAATCAAGTA
GTTGGAGGTTCTGACAAGTTTTTGACACTTGATATATTAAATACACCAAA
GATTATTCAAGATGCTCCAGAAATTACCGAATATGATTACAATGTCAATT
ATAAATGGGACAGTATCGTATCCGGTGGTTCTGTCAATTTATCCAGTGTC
TACTTGGTGACAACTGTCCTTGGATCTGACCAATTCCAATCGGGTTATAC
TGAAGAGAAGTTTCTTATGCTGACAACAGATACTGCATACAATTTGACCA
TCAATGATGTTTGTCAACGGATGGGAGGAATTCATAGACACACCCCGAAA
AAGAAATATCGGATTAAAATATACCCCATCAATCGAAATGGTTGGAATCG
ATCAAATGCCCTTAATGCAACTTTTATACGTAAAAGATTGCCGAATGTAT
CTTCAGTAGAAATTTCACGACCTCGATTTTATGGTTCTGCTAATTTAGAA
TGGGAATTTACTGTACCACCCGT
Run BLAST on NCBI

transcript from alignment at sc0000197:177385..185035+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014679 ID=TCONS_00014679|Name=TCONS_00014679|organism=Clytia hemisphaerica|type=transcript|length=7651bp|location=Sequence derived from alignment at sc0000197:177385..185035+ (Clytia hemisphaerica)
GGAAAAAGGGAAATGAAGATAATATGattatgtaaaaaaatattgctttt
tattaaatttgttttaaagttaAGAGATGATGAAAAAGATATTCACTATT
TTGCTGTTCTTTGAACAATATATCATTACTGAGACATCAAAACTGGATAC
ATGTGGCTATGCTGATAATCCATCTGATCAATATGATTTCAAAACTGATA
AATGGTTTCACATTGGGCAATTGTATTCTTATTGTATGCAGGTAAAGAGC
CTACTTCGTACTTTGAGAAAATCTAAgatgaaaaaaagttatgttttggG
AGTGGAGACGTTTTGTTTCTAAGAATGTTATGATGACTATATTCAAGCAA
TTAACAAACATCAATTAATTAAAGAGCAAAACATTGTCTTCTTGccatta
agaaaaaattgatagTTCGACTTTTTTGGTTTGTAATGTTATTTTTGTCA
TCACTGTTAGAAACCTACTCTTTCTAATCATAACATGAAAAAACATTCTT
GTTCAATCTTCAAGTACCTTTTTTTCATTTGGCTCTAGGGTCCCCCTCAc
atcaaatgtaaacaaaaaagctcTTATCATCTCTCATCTCTTTCAGCCTG
GAAATTTGACCACTTTTGATGCAGATTGCAAAACTACTGAATGTAAAAAC
GTAAGAgaatttcacaatttttattttctattcaattaaCACCTATAGTG
GGGGTCTGATCACTCTAAAATGTAAGCAAATAATGGAAATATACACAGAC
ATATTTGCATTAGAGCAGTAGCAATCTAAAGGAGGGTGTTATAATTTTTG
ACAAGACTTTAGGACTGTTGATATCCATATTAGGAATATAACCCTCTCTA
TCATAAATGGAACATTTtcctgattttatttttttgaaaatatgatatat
aactaatctaaaaacacaaatatttgaaaaatatatagatTTCGTATATA
CTTGCGATTCATGtgattaaaattgaaaaagtaaaTAATATAAAGTCTAC
GTGTATACGCGGCGGGGTGTTGAACCAAAATTATGACCAGAGTGATGGGA
AGACCATCAATAGTTTTCATAGTCATCAACTAGCTATAGGATGTGTTTTT
CCATATCAGTTCACCATTTTCTTGGCAATATCCTTGCCAGTTACCCCATA
CTCTTGTTGTGCTGAAGGGATAAATCTTCATACCAACTATAAGAAGAATA
AAAGACAAATTATAATATATCCCTTACAAATGAGCACACTTGAGGAACAC
TTAAACAAggatttttgtcatatttactCTTTAGATCTCCCCAGATATCT
CTTCTTTCAAGTTTTACAAGCACATATAATTCTAATTTAATTAATACTCC
TGACCTGTTCTGGAGAGCTAAGCACGTGCTTCAACAGTGTCAAAGAAGAG
CCAACATGTCATTTTCGGGATTATTTTACTGGGTCACTATCTAGTGATTT
TGACAGTTTTCAAGGAGAATTTTTAAAGTGGCAGAAACCTTGCATTTATa
gcaaaagtaaacaaagtaatCAGATTTTTCATACAATGTCAACATTAGTC
TATGATATATTTACTCCATTTATCTGTGCAAATTTACTTAGTCTAACAGG
TCAGGTATCAATCTAATACTTCCTCCTTTAGAAATGTCGAGTTTCATGAG
GGATTGAACTAAAATCTGTCTTAATATAATCTGCAGCAGAGATATAGGGA
CAAGCTGGattttttacaagctcttatttgatttggttggtcgttaagat
gtaataaaagaatcttattactttttctaaagaacgcgtcatctctatca
cttcaaatgaccaattagtgaagtatcttgtaaaaactccagctcatccc
gagATATAAACTGCTATTGCTTTtaatagaattcgaattagacaGCCGTT
tggtgctcgttgaaaagatgatCAGGAGTGGAGTATTGGGTATCAAAAAT
GCTCTTACTCGTAACTCCTCATTTACTATAAATGATAGATCTCTTTTTTG
GTCGAAAGATTATCATTATGCTACTTACTGTAAGAAACACAAAACGTTTG
ACTTGATGTTAAAGATATCAAATGCATCAGCAACATCGCCAATATTGAAA
AATAGTATGAGAAATTCATCCTGCAGGCGAATAATGTAAAATCTAATTGA
TTGAGAAACAAACGAATGCTACACGGGATTCCTAATAAAATTCTAGTTTG
GAAGACtaaattaaataattaaatatCTGTTTGATAGAAGTATTAATGCA
ATTTGAATCAGGATTCATTGACTTTTCCTTTTGTTATTGATGATTCAATC
atatttattaaatattttattaaaGGTTGGTACCTGTTTAtattaaaaat
ggaaaatagtTTATAATGCACGCAATCATCGCTGAATTCACTGCATTTCA
AACGGAAAACACAATTTGCTGGTTTAGGGATAAACAAAATGAAACCTTCC
TTTCGAAGCCTTTCAAACAGCAGGATAACTAATTTAAGActaatttttta
aacaaaaatgattATCATAGTATTGGTAATTGTAAAGCACTTTTTCAAAG
ACCTTTGGAAACTTCTATCTAAAGAAGTTTTAGAATGAACAAGGCTCTAT
CGCTTTCGATCGAAATCAAATTTAAGCTTTCGTAacatctacacgttttt
tttataagaacaaactatataagaacataaggttttgatggccaaaatat
taagaacaagttaagaacattttaaggttttgcggactctaaaacagcca
atttcttaggaaaagggacaaaaatactcacaaaatggtgaaaaaagaac
atgttaagaacctttttaggcttccaaaagcttcgaaaattttggatgtt
cttaaaaacaACGTGTAGAAGGTCAAATGCCTCTTTAAGGATCTGTTAAT
TATCAGTTTGTAGTAATAATGCTGAGTTTAATTAAGCTTGTTATAGAATG
gtctttttttgtatttgttgATTTTAATTCCCTGAACActagaattttga
ttttttacttatGAGCTCAGAGGAATATTAAGCTATCGTTACTAAGAACA
CATTTCTCGCATTCTCAGTGTAGCCCAATGACGTAATGACTTTTCGATCA
ATGACTTCCTCTGATTTAAGAAAATCAACTCTattgaatttggaaaaaaa
gcaTTTATTTTTTTAGCTCCATATCAAATTTTCCCGATCGGAGTTTGGTA
GAAAGATAAGTGCCCTCCCCATCTAAACACATTACTGACTAAAACATGAT
CAACCTTCAAAACCCTTCACTCTCTCGTTCCTTTATTTTCCTGCCTCATG
TTCTAGGGAATGAAACCAAGAATCTTATATTGTCgagatttcaaatattt
tttgacacttttataTATGTGAATAAGGGTCTGATAATTAGAATAAGGTT
CTGAACATTATTCCGACTCATTCCGATTGTTCCCTTTCAGAAACGAAATT
TATTTTACGTCAAGTGATATATTATTCCGTATTTTAGTGTATGAAAGCAT
GCCCAAATGGAGATTTTAACTTGGCAGCTTGCATCTCCGAGTGCAACGTA
AGTACTATTACATTTTCTGTTATAATCATTTGGGGAATCAGTATTTATTT
AAGCGAGGGTTCATTAAATcgttagcgaggttaagcaatgtttatttaga
ccgttcaatgtgataccgtaggcctgtacataagatttcatttgcatggt
ttgctttgataagttatgtacaggcctacggtatcgcactttacggtcaa
aataaacccgtgaTTAACATTGCTATTAACATGTATGCAATGATTTGAAT
TTGACAAACTCTTCTATCAAATTACTAAAGGTCTTGGTGGGTCTTAAAGG
AGGTTTAAGATTTATGACACGAGTTgtatttttatataagaaatgttata
aaaagaaaattgttcataTCAGTCTTATACAGTTGACGGTTGTAATGAAA
TGTGTGCTTCCTTTCGAAAGGTATAAATAATACCGGATATTAAAGCGAAA
CACTCCAGCATCAGTTTCAAACCCTTTAGATCCACCACTTAAATTCCTTT
GACAtcaaatttaatactgttttaAACTTAGCAGCAAACACCTCATTGGG
TTTTCTTAGTTTAGTTGAAAAGGAACAGAATTTAATGAGCCTCGAACCTC
GTTTATCATAAAGTGTTTTGACGTCAACAAGCCTTTTGATTTTGCgtaaa
aatacaaacaaaatgtCGCAAGTTTTGAAATTATACATTGATTCCCTGCA
GAGAGACAATATCATTTTACAAACATTGCAAATCTTTTGCCACCAGGAAA
CTCATAGATTAAATGAGTAATCTTTCAGATATGAAATATAACTTAACGAA
TGCGTTGGCtatttcgatttaaaaacgCATGTTTTAAGAATACTATATAA
TAATATCAGGCATTTTTGAGTGGGCCAATTATTGTAATTATCTAATCCTA
TCAAACCTATTGATcttgaaaaatgtttgtttattttCGATATGTGGAAA
AATCTTCCTCTCCCATCTCTATCACAGTACTAggtaaaactgaaaataaa
aagcATATACTGTAATGATCTTAAACAGTGTCTATCAATGTCCACTAAAG
TTGCCGGTTATTTTCATTGATTAAAATGAACATGAATCATTATGATGCGA
TGTGTAGTGTAATGTACTTTATACCCTGGACACAGTTTCTTGATCTCAGC
CAAACTAAAAATCTTTGATGGAAGTTTCTTGAAGTGGTACCACTACTCAA
TACTGTAGTagttaaaacttttttgaacGGAAAATTTCATCGAATTATAC
CATAAGGatacctttaaaaaaaatctgatcGAAGATCAGGCGGATATAGC
ATAGTAAAGGGTTTATGAAGGTCAATGACTCTAACCCTCTTATATCccta
aaataataattattatCATTTGTATAATTGGTTTCTTTTTTCGGTTTTCC
AGTCAAACGAGCACTGCATCAATGGATGCAAATTCTTCAATCAAGTAGTT
GGAGGTAGGTCTTCTTTAAGTTGAGCTTTTCAATTCTATTGTCACTTTAT
TCGGgtacaaaaatactaaaaatgagGCGAAAATGGTCTCATCAATTCTA
GCGAATTTACCCCTGGGAGATTTGTCCCTCGGAAAAATGCCCCCGCGGGA
ATTGGCTTTTCAATATATATACTGATGACGCAAGATGGTATTTTGAACGC
TTAAAAAGAATACTTATTCCAAAATAAACACGTCAGATCTCATTGTTCTG
ATATAATTCAAAAGCTAGTCTTTATAACGTCAGACTTTCGTATGGAATTC
GTTGAATGTAGTTTACCTTGAATAAGGTCGTAGATTATGTAAGTCGTTAT
ATAGAACGTCGTCAAATTCTAGAAAATGAATTTCAGAGACGTCAACACAT
AATGCCAATCATCTTTTAAACGTGTGCCAAAAAGATGAATCTAATTTAAG
AGTGGCACCAATAAAAAATCCACAAATATTCAAGAAATGTTGAATAACTA
TTTAAAAGTGGATTCTACCTCAAgtgtttttttgtaaattgtATAGGTTA
TTTCATGTCTCCTTATGTTGTAAAGACCAAAATTTAATGCGGTTTTATCG
TCTCCTGGCTGTCTCCTTAGACAAAGCCATGATTagtccaatttttttta
aatttcgatttcgCTTTTTAGTTAATACATAGCAGAATTCTCCTNGTTTT
GTAGGGAATTCGTTGAATGTAGTTTACCTTGAATAAGGTCGTAGATTATG
TAAGTCGTTATATAGAACGTCGTCAAATTCTAGAAAATGAATTTCAGAGA
CGTCAACACATAATGCCAATCATCTTTTAAACGTGTGCCAAAAAGATGAA
TCTAATTTAAGAGTGGCACCAATAAAAAATCCACAAATATTCAAGAAATG
TTGAATAACTATTTAAAAGTGGATTCTACCTCAAgtgtttttttgtaaat
tgtATAGGTTATTTCATGTCTCCTTATGTTGTAAAGACCAAAATTTAATG
GTTTTATCGTCTCCTGGCTGTCTCCTTAGACAAAGCCATGATTagtctaa
ttttttttaaaagcttaCAAACCCACTGAGGAGTATAATGTATTACTGAA
TCCGACGCTATACACAAGTTTTCCCGTATCTATTAGGGGCGTAGATCCAA
CCTCGTGTCAGGCACTAATCTTTTGAAATACAGTGCTTAGGAGTAATCTT
AtagtcactttcgatttcgcttTTTGGTTAATACATAGCAGAATTCTCCT
TTGACTCCTGAAACTTGGTAACACTTACTCACTTGTTTGAATCAGTCATT
CTATAAAGTAACAAgaaagcttttgctgaaaacttgttgtttttcttatt
aCTTATACTCACTTGTTTTAATTAAATAGATTGTTTGTCTGCTGGCATTC
TCTACCTAAAATAGTCATTTAGCAGTCCGACTAGAACTTTTCTCTTTCCA
TTTTTTAAGGTTCTGACAAGTTTTTGACACTTGATATATTAAATACACCA
AAGATTATTCAAGATGCTCCAGAAATTACCGAATATGATTACAATGTCAA
TTATAAATGGGACAGTATCGTATCCGGTGGTTCTGTCAATTTATCCAGTG
TCTACTTGGTGACAACTGTCCTTGGATCTGACCAATTCCAATCGGGTTAT
ACTGAAGAGAAGTTTCTTATGCTGGTAAGTGTAAATAGGTCTGTTGTTGC
ATTTACCAAATGAGTGGTCTTTAATGTTACTACCCAGAAAGAATCCAACA
GAGTTATCTATTTTCAACTACAAACTATAGGGTTCAATGAGACTGAAATG
AGCTAATCTAGATCGGTCACTGGTCACATTCGGCTCTGCGAAATGTACAT
AGTGTCTTATTCTGAGCCTGTGATCATCCTGGTCTTTCTTCTGAGAATAT
AACAATAGTGCACGAACATTTGCAATATCAATGTTGCGAGGAGGAAAAAA
CCTTGGTGGACCTAATTTCTTGCATGACGCATTGATAGCATAGTAGTGAT
GCATGACTGTTCCTAACAATTCGTGTTTTCCTCAATCTCAAGACAACAGA
TACTGCATACAATTTGACCATCAATGATGTTTGTCAACGGATGGGAGGAA
TTCATAGACACACCCCGAAAAAGAAATATCGGATTAAAATATACCCCATC
AATCGAAATGGTTGGAATCGATCAAATGCCCTTAATGCAACTTTTATACG
TAAGTATTAAGAAAGATCCTTTCAAAACACGTATCAATTCTATTGTGATA
CATTCATGGGTCAAGGACCGTGTGATACCCGCCACTTTTGGCCAAAATTG
TTTCCTCCTGGGTTGAGTAAATAATCtaaaatttcatatttatttCTTCA
TCATTTTGTAGATGTATTCTCTAAggattcgaatagtagaggaGAGTCTC
CCATATTTTCTAAAAGTATGATTAACGGGGAAGTAGCATTTATTTATCTT
ATCTATTAAGACTCAGACGTCTCTGAATTCTTTAGGTATCAATTaaagag
ttttttgaaataattaagtTTAGAATTCAAAGTAGTCCTTCTTTTTCTCT
TCCACAGGTAAAAGATTGCCGAATGTATCTTCAGTAGAAATTTCACGACC
TCGATTTTATGGTTCTGCTAATTTAGAATGGGAATTTACTGTACCACCCG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008220XLOC_008220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014679-exon-sc0000197-1491911889:177385..177625TCONS_00014679-exon-sc0000197-1491911889:177385..177625Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1510915933:177385..177625TCONS_00014679-exon-sc0000197-1510915933:177385..177625Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1575043694:177385..177625TCONS_00014679-exon-sc0000197-1575043694:177385..177625Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1491911889:177981..178034TCONS_00014679-exon-sc0000197-1491911889:177981..178034Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1510915933:177981..178034TCONS_00014679-exon-sc0000197-1510915933:177981..178034Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1575043694:177981..178034TCONS_00014679-exon-sc0000197-1575043694:177981..178034Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1491911889:180872..180931TCONS_00014679-exon-sc0000197-1491911889:180872..180931Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1510915933:180872..180931TCONS_00014679-exon-sc0000197-1510915933:180872..180931Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1575043694:180872..180931TCONS_00014679-exon-sc0000197-1575043694:180872..180931Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1491911889:182337..182388TCONS_00014679-exon-sc0000197-1491911889:182337..182388Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1510915933:182337..182388TCONS_00014679-exon-sc0000197-1510915933:182337..182388Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1575043694:182337..182388TCONS_00014679-exon-sc0000197-1575043694:182337..182388Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1491911889:183844..184058TCONS_00014679-exon-sc0000197-1491911889:183844..184058Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1510915933:183844..184058TCONS_00014679-exon-sc0000197-1510915933:183844..184058Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1575043694:183844..184058TCONS_00014679-exon-sc0000197-1575043694:183844..184058Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1491911889:184427..184583TCONS_00014679-exon-sc0000197-1491911889:184427..184583Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1510915933:184427..184583TCONS_00014679-exon-sc0000197-1510915933:184427..184583Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1575043694:184427..184583TCONS_00014679-exon-sc0000197-1575043694:184427..184583Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1491911889:184942..185035TCONS_00014679-exon-sc0000197-1491911889:184942..185035Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1510915933:184942..185035TCONS_00014679-exon-sc0000197-1510915933:184942..185035Clytia hemisphaericaexon
TCONS_00014679-exon-sc0000197-1575043694:184942..185035TCONS_00014679-exon-sc0000197-1575043694:184942..185035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:177385..185035 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.319075	0	0	0	0	0.0344777	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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