TCONS_00014694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014694
Unique NameTCONS_00014694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014694 ID=TCONS_00014694|Name=TCONS_00014694|organism=Clytia hemisphaerica|type=transcript|length=2311bp
cTCATTTGGCTTGGTGATCGAGTTTTCTGCCAAGCATCTTGCAGAAAcca
ttctgattggatgaataatCTACCAATAGAAATGCACGAAATGAAGATAA
CGGAAATAGCCATTCCAGGCTCCCACGACTCGGGAACTTATTCGTTGATG
AAGACAAGTGATATTTTTATTGATGGCTCAAGTCATAAGAATGACATCAT
CcttgattttttgaagtttcgaTCACAATATAAACAAAACGGCCTGCTGG
GAGAATTAATTTACAGATGGTCCATGACGCAAGATCTTAACATCACAAGC
CAGTTGTATTGTGGAGTGAGATACCTTGACCTTCGCATTGCCTTTGATCA
AAAAAATGAAAGTCGAATCGTTCATGGTCTATTCGGGACAACACTCCACG
ACATATTTACTCAGATCAAAGACTTCATCATAAAATACTCCAAAGAAATC
ATCTTACTGGACTTGCAAAGTATGGCAACAAACCATGAAATCAGCAAAGA
GAATGCTCTAAAGAATGTTACAGATTTGTTACAAGATTATTTTTCTGACC
GTATCATATttgcagaaaacattcaaagTTATAAACTGAAAGATCTGTGG
CAGCAAAACATTAGCGTTATTGTATTCAAGCGATCACGTGACAATAACAA
AAAAGATTCGATTCTTCACGCGCATGCGTCAATTCGATCACCATTCGATT
ATAAACAATTCACGCAAACATGGTCATGGTTGCACTTCCTTGATTTAAAT
TATGCAAATAGAGGTAAACAAGGCACTGATACTTTCTATGTGACTCAAGG
GATCATGCAGCCACACTGGATGGAAGTCGTGATCGCTGGCATTTCAGAAA
ATGCAACCTTGAGAAGTTGGGTGTCAAGTAAAGCGACACGAAAAATAAGG
GACTGGTTACACGGTAAACAGATTGGAAAAAATGGTATTAATATAGTGAT
CGCTGACTTTGTAGAGTTTTCCAATTTCACAGACACAGTTCTAGATTTAA
ACGCAGTCACCAATGTGAGAGGTCCTACATCTCGAAAAAGTGGCTCAGTC
TGTTACAGGTCCATCGATAACAATTTGTTATGGTTGCTCTTAATTATTTT
CAtgttgttggaaagatattgagAAATAATGTGGACTGTGATTTGAAAGT
AATTTAAACTGGCTAAAAATATATCATACCTTTATTTAACAATGCTACTA
AGTGTTCTAAATataaaaatcgaagaaaattatTTGCTACGTTTGTACCA
TTTAACATGCTTCTGTCTAAGTGAGGGCGTCCTGTATTTTTTTGGCAAGT
ACAATCTTTTTCTCTTGTGTCTTGCAAACCTCTTTGTAATTTCAGACTTC
CCATAATTTCATTTGGACCACGAATCACGTTGCATTCCTTTCTGAGAGTC
ATGCATACCGCCCTGAAATAGATCATTTGGGAGAGCGAAGGGTTGGTTTT
GAACGTCATGCATACCGCCCTGAACTTCATCATTAGGGAGGGCGAAGGGC
TGGTTTTGAACGTCATGCATACCGCCCTGAACTTCATTATTAGGGAGGGC
GAAGGGTTGACTTTGGATATCATGCATACCGCCCTGAACTTCATCATTAG
GGAGGGCGAAGGGTTGACTTTGGGCGTCATGTATACCGCCCTGTACTTCA
TCGTTTGGAAGTGGCGGGGAGGAATGCGATTCAATATTGTCCATGTGAAG
CATCAAAGGCATGGGTTTGCGATAAGGTCCATCTCTATCTAGAAGGAAAA
GTTATGAATTTATGTAATAATGTAATTTAAGTTCTCTATCCTTAAGTAAC
CCCGCTGTGTGATCAATGATCAAATAAGTAACTCTGAACAAGTGTTAAGA
TTAATAAGAATACGAGAATGAAAAATGGTTGCTTTAGGGTGATGACAAAG
CCCCAAATTAGATTGACGGTTGAAGTTGATTGAAGATTACGGGGGGGGTT
AAAGAGTGTGTATTCATACCTTCAATATACCTTTGATGTGAAAATTCCAC
CAAGCAGAACAGTTGGAACACGAAAAATGTGAATGCGTGTTTCATTTTGT
CTTTGAttcccaaaaaaatatttgtgtgAATATCACTTAAACTGACGAAA
AGATTAGCTTCGCAACGTCTGGAGGGTTAGCTTAAATCAGATTTTCGTGG
TCTGATGTCCTCACTCTGAGTGAAATTATACTTTCATAATTTTTGTGTTA
TATATTAATTTGAAGCAAAAATTAACCAGATGGCATCCGCTTTCATCCTT
ATACTGTTTATCTTTCTGAACAAGCGTCAACTTCAATCAAAGTCTATTTT
GCGATAGATAG
Run BLAST on NCBI

transcript from alignment at sc0000197:282398..286637+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014694 ID=TCONS_00014694|Name=TCONS_00014694|organism=Clytia hemisphaerica|type=transcript|length=4240bp|location=Sequence derived from alignment at sc0000197:282398..286637+ (Clytia hemisphaerica)
cTCATTTGGCTTGGTGATCGAGTTTTCTGCCAAGGTTGGTAATTCTTATA
CACAGTAACTAACCTCTTTCCTTTGATGACAAACTGCCATAGTTGCCAGA
GGTTTGCTAACAAACAGAGAGTGAGATCAAGATAGGATCAgggacacccc
tgtctcacagccccggtggaaccttttccctcagtggggacgaaaatttc
catcgaaatcccaatggggatagaaattctattgttccaaggatataaaa
aatccagtggggattgttttagagtgtaatttttaaacatggaatttcga
gtggggatgaaatcaaagtaaatttcccagtggggtttcCACCGGGGAaa
gaatttttgctaaattttccagtagggctGGTGTGCCAGCGgctctgtga
cacaggggtgttcagGGTGTGTGTAAAAACTGCAATTCCATCAAAGTCGT
TTCACGTCTATTGACTttggctcaaatgaaagaaaCAATGAATAAAGCAG
ATATTACTGCCTCTTCAAAACATCAAAGCAAAGCACTTTTATATTTTCCT
CTTTCACTATGGCATGCAGCATCTTGCAGAAAccattctgattggatgaa
taatCTACCAATAGAAATGCACGAAATGAAGATAACGGAAATAGCCATTC
CAGGCTCCCACGACTCGGGAACTTATTCGTTGATGAAGACAAGTGATATT
TTTATTGATGGCTCAAGTCATAAGGTAAGTAGAATTATTACTATATGCAT
CAACATATTAAAGTTTTCTtcactgtttttcttttcatctttaaAGGGCG
TCAAGCCATGATATTCATTACATAATATTTTCTACGGAATCACCCCGGAT
TTTGCAAGTAGTGGAAATTTCAATTTACCAATACTGGAAAAAACCGTACA
GTAGTgcttccgtagaaaacattacatcataaaTATCACATAAATCTTGc
aaagaaataaattttttgaaataactttttcatGGCTTTTTTAACTCCCG
TGGgagagggggtactagggcaaaatgggttacggggatgcgtAGATGTG
ATGACTCCCAGGTAGAGTcacaaaaaaacaccaaaatagaaaaatcagtc
cctcgtagggtgccttttttggaaaatttggagaaaaagtagaaaatttg
tcaaaattttggaatttcagtcccattcaggatcacttttttcgcaaatt
tcggcaaaatgtttgaaaaaacgagtcccacgtaggttccattttttgaa
cctcagcggagcacccctgTCGGTTGGCAAGGGTAGTATCCCCCCGGGTT
TTAACTTCAGTTTATATTCAACAATCGATTTAAAACGATTACCGTCTGGT
GTATAAATAAGAAAGTTTCAAAactaaataaagcttttttgaCATAACTT
AGTTTTTctcacaaacaaacaaacaaacaagatgGTCTTGAAAATGATTA
AATATTATAAAAACCCTTTTTCCCTATAGAATGACATCATCcttgatttt
ttgaagtttcgaTCACAATATAAACAAAACGGCCTGCTGGGAGAATTAAT
TTACAGATGGTCCATGACGCAAGATCTTAACATCACAAGCCAGTTGTATT
GTGGAGTGAGATACCTTGACCTTCGCATTGCCTTTGATCAAAAAAATGAA
AGGTAGGCCTTTTTTCAGAAACCGAGAAAAGATGTGCAACcacgttccct
gcgtattatcagctttttgatgcttactgatagcgctagataatatttTC
TGGCGTCAATCAGCAACGTAAATAAAACCTGAGATACACGAGGACGAGAT
TGCAAAATGATTTCTCCTTACGCAAATGGTCCCATTGTTTTTTCGAAAAC
CACCATGAAGTTGTGTTGAAGGGTGGGTTTGTTTCTTTACGTTTGTGAAA
AATATGGTCAGTTTATAGACAACGCATTTAATGTTATTCGTTTTCAGTCG
AATCGTTCATGGTCTATTCGGGACAACACTCCACGACATATTTACTCAGA
TCAAAGACTTCATCATAAAATACTCCAAAGAAATCATCTTACTGGACTTG
CAAAGTATGGCAACAAACCATGAAATCAGCAAAGAGAATGCTCTAAAGAA
TGTTACAGATTTGTTACAAGATTATTTTTCTGACCGTATCATATttgcag
aaaacattcaaagTTATAAACTGAAAGATCTGTGGCAGCAAAACATTAGC
GTTATTGTATTCAAGCGATCACGTGACAATAACAAAAAAGATTCGATTCT
TCACGCGCATGCGTCAATTCGATCACCATTCGATTATAAACAATTCACGC
AAACATGGTCATGGTTGCACTTCCTTGATTTAAATTATGCAAATAGAGGT
AAACAAGGCACTGATACTTTCTATGTGACTCAAGGGATCATGCAGCCACA
CTGGATGGAAGTCGTGATCGCTGGCATTTCAGAAAATGCAACCTTGAGAA
GTTGGGTGTCAAGTAAAGCGACACGAAAAATAAGGGACTGGTTACACGGT
AAACAGATTGGAAAAAATGGTATTAATATAGTGATCGCTGACTTTGTAGA
GTTTTCCAATTTCACAGACACAGTTCTAGATTTAAACGCAGTCACCAATG
TGAGAGGTCCTACATCTCGAAAAAGTGGCTCAGTCTGTTACAGGTCCATC
GATAACAATTTGTTATGGTTGCTCTTAATTATTTTCAtgttgttggaaag
atattgagAAATAATGTGGACTGTGATTTGAAAGTAATTTAAACTGGCTA
AAAATATATCATACCTTTATTTAACAATGCTACTAAGTGTTCTAAATata
aaaatcgaagaaaattatTTGCTACGTTTGTACCATTTAACATGCTTCTG
TCTAAGTGAGGGCGTCCTGTATTTTTTTGGCAAGTACAATCTTTTTCTCT
TGTGTCTTGCAAACCTCTTTGTAATTTCAGACTTCCCATAATTTCATTTG
GACCACGAATCACGTTGCATTCCTTTCTGAGAGTCATGCATACCGCCCTG
AAATAGATCATTTGGGAGAGCGAAGGGTTGGTTTTGAACGTCATGCATAC
CGCCCTGAACTTCATCATTAGGGAGGGCGAAGGGCTGGTTTTGAACGTCA
TGCATACCGCCCTGAACTTCATTATTAGGGAGGGCGAAGGGTTGACTTTG
GATATCATGCATACCGCCCTGAACTTCATCATTAGGGAGGGCGAAGGGTT
GACTTTGGGCGTCATGTATACCGCCCTGTACTTCATCGTTTGGAAGTGGC
GGGGAGGAATGCGATTCAATATTGTCCATGTGAAGCATCAAAGGCATGGG
TTTGCGATAAGGTCCATCTAGAAAGGAAATAACACTACTGTTTAGGCTAA
AGAAATAGGATATCACAGATAAAAACTCTCAATttgttttgagaaatttt
aagTTGGAAGTTTGAAGGACAGTAGAAAAGTATCCATAAAGGtcctttga
aaaatctcttaaatttctaaaattatagaatGCATACCATCTTTCGCTGT
GTCATGCATACGGCCTTGCACTTCATCATTCGGGAGAGCGAAGGGCTGGT
TTTGAGCGTCGTGCATACCACCTTGCATTTCATCGTTAGGAAGTGGGAAG
GACGGCGATTCAATATTGTCCATGTGAAGCATCAAAGGCATGGGTTTGCG
ATAAGGTCCATCTCTATCTAGAAGGAAAAGTTATGAATTTATGTAATAAT
GTAATTTAAGTTCTCTATCCTTAAGTAACCCCGCTGTGTGATCAATGATC
AAATAAGTAACTCTGAACAAGTGTTAAGATTAATAAGAATACGAGAATGA
AAAATGGTTGCTTTAGGGTGATGACAAAGCCCCAAATTAGATTGACGGTT
GAAGTTGATTGAAGATTACGGGGGGGGTTAAAGAGTGTGTATTCATACCT
TCAATATACCTTTGATGTGAAAATTCCACCAAGCAGAACAGTTGGAACAC
GAAAAATGTGAATGCGTGTTTCATTTTGTCTTTGAttcccaaaaaaatat
ttgtgtgAATATCACTTAAACTGACGAAAAGATTAGCTTCGCAACGTCTG
GAGGGTTAGCTTAAATCAGATTTTCGTGGTCTGATGTCCTCACTCTGAGT
GAAATTATACTTTCATAATTTTTGTGTTATATATTAATTTGAAGCAAAAA
TTAACCAGATGGCATCCGCTTTCATCCTTATACTGTTTATCTTTCTGAAC
AAGCGTCAACTTCAATCAAAGTCTATTTTGCGATAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008225XLOC_008225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014694-exon-sc0000197-1491911889:282398..282431TCONS_00014694-exon-sc0000197-1491911889:282398..282431Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1510915933:282398..282431TCONS_00014694-exon-sc0000197-1510915933:282398..282431Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1575043694:282398..282431TCONS_00014694-exon-sc0000197-1575043694:282398..282431Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1491911889:282967..283121TCONS_00014694-exon-sc0000197-1491911889:282967..283121Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1510915933:282967..283121TCONS_00014694-exon-sc0000197-1510915933:282967..283121Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1575043694:282967..283121TCONS_00014694-exon-sc0000197-1575043694:282967..283121Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1491911889:283877..284049TCONS_00014694-exon-sc0000197-1491911889:283877..284049Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1510915933:283877..284049TCONS_00014694-exon-sc0000197-1510915933:283877..284049Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1575043694:283877..284049TCONS_00014694-exon-sc0000197-1575043694:283877..284049Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1491911889:284345..285690TCONS_00014694-exon-sc0000197-1491911889:284345..285690Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1510915933:284345..285690TCONS_00014694-exon-sc0000197-1510915933:284345..285690Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1575043694:284345..285690TCONS_00014694-exon-sc0000197-1575043694:284345..285690Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1491911889:286035..286637TCONS_00014694-exon-sc0000197-1491911889:286035..286637Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1510915933:286035..286637TCONS_00014694-exon-sc0000197-1510915933:286035..286637Clytia hemisphaericaexon
TCONS_00014694-exon-sc0000197-1575043694:286035..286637TCONS_00014694-exon-sc0000197-1575043694:286035..286637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:282398..286637 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0789285	1.06488	0.568618	0.394851	0.140951	0.427404	0.413584	0.824974	0.596071	0.144857	0.406517	0.769067	0.584408	0.151225	0	0.390529	0.216672	0.237127	0.193008	0.840741	1.46646	0.0464089	0	0	0
Blast
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BLAST of TCONS_00014694 vs. Swiss-Prot (Human)
Match: PLCX3 (PI-PLC X domain-containing protein 3 OS=Homo sapiens GN=PLCXD3 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.347e-39
Identity = 93/331 (28.10%), Postives = 161/331 (48.64%), Query Frame = 1 
Query:   52 SDWMNNLPIEMHEMKITEIAIPGSHDSGTYSLMKTSDIFIDGSSHKNDIILDFLKFRSQYKQNGLLGELIYRWSMTQDLNITSQLYCGVRYLDLRIAF---DQKNESRIVHGLFGTTLHDIFTQIKDFIIKYSKEIILLDLQSMATNHEISKENALKNVTDLLQDYFSDRIIFAENIQSYKLKDLWQQNISVIVFKRSRDNNKKDSILHAHASIRSPFDYKQFTQTWSW---------LHFLDLNYANRGKQGTDTFYVTQGIMQPHWMEVVIAGISENATLRSWVSSKATRKIRDWLHGKQIGKNGINIVIADFVEFSNFTDTVLDLNAV 1008
            +DWM  LP  MH + +T +AIPGSHDS ++ + + S +       + + + +F+       +     +L+ +W  TQ +N T QL  G+RY DLRI+    D  NE    HGLF   +++   +I  F+  + KE++ LD        +   E     +  +L+D + +++  A   Q   LK LW+++  V+VF             H+  ++  PF +        W         + FL  +   R K+G+  F+++Q ++ P     V+ G++    LR  ++ +A   +  W+  ++ G++GINIV ADFVE  +F  TV+ LN V
Sbjct:   13 ADWMATLPESMHSIPLTNLAIPGSHDSFSFYIDEASPV----GPEQPETVQNFVSVFGTVAK-----KLMRKWLATQTMNFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEK----LVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVF------------YHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGS--FFISQVVLTPK-ASTVVKGVASG--LRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLNYV 313
The following BLAST results are available for this feature:
BLAST of TCONS_00014694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLCX33.347e-3928.10PI-PLC X domain-containing protein 3 OS=Homo sapie... [more]
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