|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014697 ID=TCONS_00014697|Name=TCONS_00014697|organism=Clytia hemisphaerica|type=transcript|length=1347bp
AAAAGCTTTTCACTACATCACTGTATATTGGATTTGAAGTTGAATTCATC
AATAAACGTAAATAAGAACGGAAACTCACAAAAAAAAATGGACGAAAACA
TGAAATATCTGTTTTGATCAATAATTTATTAAATCtcgcttcactttttt
ttactttgttttgatttttgattttctccaACCGCGCGGCTAATGATAAA
TCAATATCGTTTTTTATTCGATTATGTATGCAGTCAATAAAATTAAAACT
CATTCCTACTTGGAAAAAGGATTCGGCGAGTTGGTACTGTGCTCCGTTTG
ATCCAGCGCCATGCTATTCAGTCctgctttgatggccaaaagaTTCATAA
AGCGAAAATCAGCATCCACATCTACAGCCATAGAAAGCgaggaaaaagaa
agaaacactCCCTCACCACATAATCTACAAGTTCCTTCAGATTGCAGACG
AAGAGCTCACACCTTTGATGAAAAAAACCAGAATACCTTCGGCAGTGCTC
TATTCATACGTAAACAGAAAGCCGAGCGGATACATTCCTACAAAACTTTC
AGGATATCAGTGTTAGGTAGCTGTCAAGTTGGAAAGAGTACcataataaa
atgttttcttggACAGCTTTTTGAAGATTATTATAATCCAACAATAAGTT
GTGAAGTTTTTGAAGCCGGGATCTTCTTGGAGATCGAAAACAAATTAAAA
CAGTTTGATTTGGTTTTCCACGATTTTCGTGGTGATTTTCACACAAACAA
TCCTTTACAATATCGAGATGAGTTGACCCACAGCCAGGGTTTCATTCTGG
TGCACACTAAAAATGAGCTGCAAAGTTTTCCTCAAGTCTTAGAAATGTTA
TCTGATATACGAAAAGTTAAAGGTGACAATTTCACATCAATTTTGATTAT
GGAGAATAAATGTGACGAGTTATGTTATTATGGAGATAAAAGAAACAATA
GACGTTCTTTTGATATGGATGGTTGTCTAAATTCTGCTGTGTCAGCAAAA
CAGAACAAAAATGTAACAGAAGCCATAGGTTCACTGGTGGAAAACATAGA
AATGACTCAATCATGACGATTGACCATGACTTTTGATTGAAAACTTATTG
GGTGTACAATCTttagtaatttttcttttttttatattttttgaacaaGA
TTATTGTCAGCAAAACAGAACAAAAATGTAACAGAAGCCATAGGTTCACT
GGTGGAAAACATAGAAATGACTCAATCATGACGACTGACCATGGCTTTTG
ATTGAAAACTTATTGGGTGTAcaatcttttgtatttttttttaaaaatat
tttttgaacaaGATTATTTAGGAAAGAAAACCAAAATTATTGCTAAA Run BLAST on NCBI protein sequence of TCONS_00014697-protein >TCONS_00014697-protein ID=TCONS_00014697-protein|Name=TCONS_00014697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MLFSPALMAKRFIKRKSASTSTAIESEEKERNTPSPHNLQVPSDCRRRAH
TFDEKNQNTFGSALFIRKQKAERIHSYKTFRISVLGSCQVGKSTIIKCFL
GQLFEDYYNPTISCEVFEAGIFLEIENKLKQFDLVFHDFRGDFHTNNPLQ
YRDELTHSQGFILVHTKNELQSFPQVLEMLSDIRKVKGDNFTSILIMENK
CDELCYYGDKRNNRRSFDMDGCLNSAVSAKQNKNVTEAIGSLVENIEMTQ
S Run BLAST on NCBI transcript from alignment at sc0000197:308772..310743+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014697 ID=TCONS_00014697|Name=TCONS_00014697|organism=Clytia hemisphaerica|type=transcript|length=1972bp|location=Sequence derived from alignment at sc0000197:308772..310743+ (Clytia hemisphaerica)
AAAAGCTTTTCACTACATCACTGTATATTGGATTTGAAGTTGAATTCATC
AATAAACGTAAATAAGAACGGAAACTCACAAAAAAAAATGGACGAAAACA
TGAAATATCTGTTTTGATCAATAATTTATTAAATCtcgcttcactttttt
ttactttgttttgatttttgattttctccaACCGCGCGGCTAATGATAAA
TCAATATCGTTTTTTATTCGATTATGTATGCAGTCAATAAAATTAAAACT
CATTCCTACTTGGAAAAAGGATTCGGCGAGTTGGTACTGTGCTCCGTTTG
ATCCAGCGCCATGCTATTCAGTCctgctttgatggccaaaagaTTCATAA
AGGTATAAACCttccatttttcaaataaaatctgAAAGCGGTTTATTGGC
TTTTACAGCCAATCAACATTGGTTTTTACAGCCAATATACGGAGCACTTT
TGGACGACTTTTGTCATCATGTTGACTAAGGTCCCGGGGGAGGGGCACTC
GATTGAAAAACAGCCATACGCGCGGCCCAAAATTAAGCttttaaaatcgg
acccttacagaaAATCTTGTGCGAAAAATCaatccttacagtgcattttc
ttgaaaatttttgaccatttccaggcaaaatatggtcagattttcgaaat
tttacagAGTGagatttttctcatctttgctgactttcgacccttacagt
gcactttgggaatgggaactttggaaaatatacccttaGTAGGTATAGTA
GGTCATTTActttgagtgccccccccccctaggtgGGGTGTACCACTGGG
GCCCGAAAAATTGACCCTGATCATGTCTAACTATTTGTTGATTTTGCTTG
TCCGATCTATTTTCAGAACGTCAGTGTTTAAAGCGATCAGAGCGAAAAAA
CCTAGGCTTtcgttttcaacatttttccttGTAAGATTTGTCACAATCAA
GGAATTTCAATACTTTTTCTATTTCAGCGAAAATCAGCATCCACATCTAC
AGCCATAGAAAGCgaggaaaaagaaagaaacactCCCTCACCACATAATC
TACAAGTTCCTTCAGATTGCAGACGAAGAGCTCACACCTTTGATGAAAAA
AACCAGAATACCTTCGGCAGTGCTCTATTCATACGTAAACAGAAAGCCGA
GCGGATACATTCCTACAAAACTTTCAGGATATCAGTGTTAGGTAGCTGTC
AAGTTGGAAAGAGTACcataataaaatgttttcttggACAGCTTTTTGAA
GATTATTATAATCCAACAATAAGTTGTGAAGTTTTTGAAGCCGGGATCTT
CTTGGAGATCGAAAACAAATTAAAACAGTTTGATTTGGTTTTCCACGATT
TTCGTGGTGATTTTCACACAAACAATCCTTTACAATATCGAGATGAGTTG
ACCCACAGCCAGGGTTTCATTCTGGTGCACACTAAAAATGAGCTGCAAAG
TTTTCCTCAAGTCTTAGAAATGTTATCTGATATACGAAAAGTTAAAGGTG
ACAATTTCACATCAATTTTGATTATGGAGAATAAATGTGACGAGTTATGT
TATTATGGAGATAAAAGAAACAATAGACGTTCTTTTGATATGGATGGTTG
TCTAAATTCTGCTGTGTCAGCAAAACAGAACAAAAATGTAACAGAAGCCA
TAGGTTCACTGGTGGAAAACATAGAAATGACTCAATCATGACGATTGACC
ATGACTTTTGATTGAAAACTTATTGGGTGTACAATCTttagtaatttttc
ttttttttatattttttgaacaaGATTATTGTCAGCAAAACAGAACAAAA
ATGTAACAGAAGCCATAGGTTCACTGGTGGAAAACATAGAAATGACTCAA
TCATGACGACTGACCATGGCTTTTGATTGAAAACTTATTGGGTGTAcaat
cttttgtatttttttttaaaaatattttttgaacaaGATTATTTAGGAAA
GAAAACCAAAATTATTGCTAAA Coding sequence (CDS) from alignment at sc0000197:308772..310743+ >TCONS_00014697 ID=TCONS_00014697|Name=TCONS_00014697|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000197:308772..310743+ (Clytia hemisphaerica)
ATGCTATTCAGTCctgctttgatggccaaaagaTTCATAAAGCGAAAATC
AGCATCCACATCTACAGCCATAGAAAGCgaggaaaaagaaagaaacactC
CCTCACCACATAATCTACAAGTTCCTTCAGATTGCAGACGAAGAGCTCAC
ACCTTTGATGAAAAAAACCAGAATACCTTCGGCAGTGCTCTATTCATACG
TAAACAGAAAGCCGAGCGGATACATTCCTACAAAACTTTCAGGATATCAG
TGTTAGGTAGCTGTCAAGTTGGAAAGAGTACcataataaaatgttttctt
ggACAGCTTTTTGAAGATTATTATAATCCAACAATAAGTTGTGAAGTTTT
TGAAGCCGGGATCTTCTTGGAGATCGAAAACAAATTAAAACAGTTTGATT
TGGTTTTCCACGATTTTCGTGGTGATTTTCACACAAACAATCCTTTACAA
TATCGAGATGAGTTGACCCACAGCCAGGGTTTCATTCTGGTGCACACTAA
AAATGAGCTGCAAAGTTTTCCTCAAGTCTTAGAAATGTTATCTGATATAC
GAAAAGTTAAAGGTGACAATTTCACATCAATTTTGATTATGGAGAATAAA
TGTGACGAGTTATGTTATTATGGAGATAAAAGAAACAATAGACGTTCTTT
TGATATGGATGGTTGTCTAAATTCTGCTGTGTCAGCAAAACAGAACAAAA
ATGTAACAGAAGCCATAGGTTCACTGGTGGAAAACATAGAAATGACTCAA
TCATGAATGCTATTCAGTCctgctttgatggccaaaagaTTCATAAAGCG
AAAATCAGCATCCACATCTACAGCCATAGAAAGCgaggaaaaagaaagaa
acactCCCTCACCACATAATCTACAAGTTCCTTCAGATTGCAGACGAAGA
GCTCACACCTTTGATGAAAAAAACCAGAATACCTTCGGCAGTGCTCTATT
CATACGTAAACAGAAAGCCGAGCGGATACATTCCTACAAAACTTTCAGGA
TATCAGTGTTAGGTAGCTGTCAAGTTGGAAAGAGTACcataataaaatgt
tttcttggACAGCTTTTTGAAGATTATTATAATCCAACAATAAGTTGTGA
AGTTTTTGAAGCCGGGATCTTCTTGGAGATCGAAAACAAATTAAAACAGT
TTGATTTGGTTTTCCACGATTTTCGTGGTGATTTTCACACAAACAATCCT
TTACAATATCGAGATGAGTTGACCCACAGCCAGGGTTTCATTCTGGTGCA
CACTAAAAATGAGCTGCAAAGTTTTCCTCAAGTCTTAGAAATGTTATCTG
ATATACGAAAAGTTAAAGGTGACAATTTCACATCAATTTTGATTATGGAG
AATAAATGTGACGAGTTATGTTATTATGGAGATAAAAGAAACAATAGACG
TTCTTTTGATATGGATGGTTGTCTAAATTCTGCTGTGTCAGCAAAACAGA
ACAAAAATGTAACAGAAGCCATAGGTTCACTGGTGGAAAACATAGAAATG
ACTCAATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014697-exon-sc0000197-1491911889:308772..309123 | TCONS_00014697-exon-sc0000197-1491911889:308772..309123 | Clytia hemisphaerica | exon |
| TCONS_00014697-exon-sc0000197-1510915933:308772..309123 | TCONS_00014697-exon-sc0000197-1510915933:308772..309123 | Clytia hemisphaerica | exon |
| TCONS_00014697-exon-sc0000197-1575043694:308772..309123 | TCONS_00014697-exon-sc0000197-1575043694:308772..309123 | Clytia hemisphaerica | exon |
| TCONS_00014697-exon-sc0000197-1491911889:309749..310743 | TCONS_00014697-exon-sc0000197-1491911889:309749..310743 | Clytia hemisphaerica | exon |
| TCONS_00014697-exon-sc0000197-1510915933:309749..310743 | TCONS_00014697-exon-sc0000197-1510915933:309749..310743 | Clytia hemisphaerica | exon |
| TCONS_00014697-exon-sc0000197-1575043694:309749..310743 | TCONS_00014697-exon-sc0000197-1575043694:309749..310743 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:308772..310743 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
|
