|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014713 ID=TCONS_00014713|Name=TCONS_00014713|organism=Clytia hemisphaerica|type=transcript|length=1832bpRun BLAST on NCBI transcript from alignment at sc0000197:22292..31230- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014713 ID=TCONS_00014713|Name=TCONS_00014713|organism=Clytia hemisphaerica|type=transcript|length=8939bp|location=Sequence derived from alignment at sc0000197:22292..31230- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014713 vs. Swiss-Prot (Human)
Match: METH (Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV=2) HSP 1 Score: 837.025 bits (2161), Expect = 0.000e+0 Identity = 411/607 (67.71%), Postives = 489/607 (80.56%), Query Frame = 2
Query: 5 YRLNKVSAELARKAADDVTEITGCQKYVAGAMGPTNRTLSISPSVENPGYRNVTFDELVDAYTEQAKXXXXXXXXXXXXETIFDTANSKAALFAIESLFEKEYRPVPIFVSGTIVDKSGRTLSGQTTEAFVTSVQHANPLCIGLNCALGAEDMRPFVERMGLSYEGFVLCYPNAGLPNAFGGYDETPEEMSATLKVFAEDGLVNIVGGCCGTTPEHIHAIKEATKHCKPRSLPDPINQDCMVLSGLEPKYITPESIFVNIGERCNVAGSRRFCNLIKKGKFEDALAIAKSQVENGAQILDINMDDGLLDGEKCMTDFCKLIASEPDISKVPLCIDSSKFEVIEAGLKCAQGKSIVNSISLKNGEEDFIEKALLIKKYGAAVVIMAFDEEGQAASLERRIEICKRSYDILVDRVHFNANDIIFDSNILTIATGMEEHNEYAIDFIKAVAEIKKLCPGSRCSGGLSNLSFSFRGMDVVRDALHAVFLYHAIKAGLDMAIVNAGTIPLYDDIPQDLLNLCEDLIWNKNTEATDKMLEFAQKQSKTGNKPQTDEEWRKEHVCKRLEYALIKGIDKYVTNDVEEARQMKEDFPRPLNIIEGPLMSGMSIVGD 1825
YR+N SA +ARKAA++VT TG +++VAGA+GPTN+TLS+SPSVE P YRN+TFDELV+AY EQAKGLLDGG D+LL+ETIFDTAN+KAALFA+++LFE++Y P PIF+SGTIVDKSGRTLSGQT E FV SV H PLCIGLNCALGA +MRPF+E +G +VLCYPNAGLPN FG YDETP M+ LK FA DGLVNIVGGCCG+TP+HI I EA K+CKPR P + M+LSGLEP I P + FVNIGERCNVAGSR+F LI G +E+AL +AK QVE GAQ+LD+NMDDG+LDG MT FC LIASEPDI+KVPLCIDSS F VIEAGLKC QGK IVNSISLK GE+DF+EKA IKKYGAA+V+MAFDEEGQA + +I +C R+Y +LV ++ FN NDIIFD NILTI TGMEEHN YAI+FI A IK+ PG+R SGGLSNLSFSFRGM+ +R+A+H VFLYHAIK+G+DM IVNAG +P+YDDI ++LL LCEDLIWNK+ EAT+K+L +AQ Q G K +EWR V +RLEYAL+KGI+K++ D EEAR ++ +PRPLNIIEGPLM+GM IVGD
Sbjct: 115 YRMNMCSAGVARKAAEEVTLQTGIKRFVAGALGPTNKTLSVSPSVERPDYRNITFDELVEAYQEQAKGLLDGGVDILLIETIFDTANAKAALFALQNLFEEKYAPRPIFISGTIVDKSGRTLSGQTGEGFVISVSHGEPLCIGLNCALGAAEMRPFIEIIGKCTTAYVLCYPNAGLPNTFGDYDETPSMMAKHLKDFAMDGLVNIVGGCCGSTPDHIREIAEAVKNCKPRVPPATAFEGHMLLSGLEPFRIGPYTNFVNIGERCNVAGSRKFAKLIMAGNYEEALCVAKVQVEMGAQVLDVNMDDGMLDGPSAMTRFCNLIASEPDIAKVPLCIDSSNFAVIEAGLKCCQGKCIVNSISLKEGEDDFLEKARKIKKYGAAMVVMAFDEEGQATETDTKIRVCTRAYHLLVKKLGFNPNDIIFDPNILTIGTGMEEHNLYAINFIHATKVIKETLPGARISGGLSNLSFSFRGMEAIREAMHGVFLYHAIKSGMDMGIVNAGNLPVYDDIHKELLQLCEDLIWNKDPEATEKLLRYAQTQGTGGKKVIQTDEWRNGPVEERLEYALVKGIEKHIIEDTEEARLNQKKYPRPLNIIEGPLMNGMKIVGD 721 The following BLAST results are available for this feature:
BLAST of TCONS_00014713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.