TCONS_00014715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014715
Unique NameTCONS_00014715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014715 ID=TCONS_00014715|Name=TCONS_00014715|organism=Clytia hemisphaerica|type=transcript|length=1738bp
ATTATTTTAATTTCTcaacaaaatgtcaaaatatgtACAAATAAATCTAA
CCGCAATATCTTTGCTTCAAACTTCAGGTTctgagaaaaaatcaaaagtc
aaaGTAGAAGGGAAAGGCAAGAAACGTTCAAAAGATTCTATTGATGACGA
TCTCAATGACGAGCCCGGAAACGAAGAAACTGGGGGCACAAAAGTCGTCC
GCGAGTCCGAACGACGACACGCGAACAACGCCCGTGAAAGGATACGAGTG
CGAGATATCAACGAAGCTTTCAAAGAACTCGGGCGAATGTGTTCGTTACA
CCTCAAAAACGAAAGTCCACAAACGAagttgacgATTTTACATCAAGCAG
TCACAATTATCACTAGTCTCGAATCACAAGTTCGAGAACGAAATTTGAAT
CCTAAAGCAGCGTGTTTGAAGCGGCGTGGAGATGAGGAGAAGATGAATGA
TGACGTGTCAGAAAAAAGGATGAACATGAATGGCTCTTTTGATGGCTCAA
AGAGACCTGGAAACAAGAAACCTCAACAAGTTCGAAGGACGGgTTTTCCA
ACCGATCAACTAGACGGCTCAGTTCAACCCATGGTACCGGATGCCGGCAT
TTTCTCTCATTAGCTTCTACACTTTCCGAATAGGCTGTGACAAATGACTA
GAAGATGTAGATCACTAGATCCAGTCTCCTCCCGAGTCTTATGCAGCTCT
TTGAGCCATTGGAGTTGACagacctttttttgaaaaaaagacatTCATAA
AAAACCACCCATTCATTTTTCTATCCGGCTGTGCTTTTGTATCCGAGCTT
CTGTTATTATGGAGAGATTGTTTTTTGTATATATGTCCCCCTGATCCAGT
ATATGTGCCGCCGTCAAAAGTTCATTGGTTAGAGATATCTGGTTGAAACA
TTCAAATCAATGacaatgaaaaacatttaaaaggaaCTTTCTTTTATTCC
AAAGCGGCAAAACTGTAATCAAAGATACACctaattattattattgtacA
AAGTAGAATATTTGACCCAAGTTTTTTGAGAGAGATTTTTTTATTCGTAT
TGCGGACGATGTATGAcggaaagtttatttttttcggACAACATTTGGTT
TTGATGTAGATTTTGACGATTTCGCaaaatttcttgatttcataatattg
aggatttttgcagtaaaaacaaaacaacccTTAGAAATATTTATTATTAT
CTTGATTAGAAGCAaagttattgttttatttttagactGATTATTTTGGT
TGTATATGTTTTTTAAGGCaaattttattttgctttttatGTTTCCATGA
GCGCTCAAGTAACCTTATTTTGGTTTAGCAGATCttctgaaatttatttt
caatttcaaagtttcaaaCTCATTACAGACCACCATTAGCCTCTGGTACA
GTGTCTCTTGTGTGTATTGTTTAGGCTTTAGTTTTAATTATTGTATATTA
TGACCCTATTATGGTTGTTATTTTAGCGAAGTAGTACAGTGTTTATTTTT
GAACCGTCCATATGTTTTGTAGGAGAGCTGGTTAGGCGCCTAACCGTACT
TTTGGTGTATGTTGATTCGTTGTAGACACAATGACGTCACATCAGCTCTC
CACGACAATCTATCCCCAAAtatcaagagaagcaaattcaattttaataa
aaagatacaaaaatgcaaaaatgaagctTTTTGTTGTCATTATTTGTCGA
ATATATTCTGACTTttatcatggaggtataaagaaata
Run BLAST on NCBI

transcript from alignment at sc0000197:65892..69790-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014715 ID=TCONS_00014715|Name=TCONS_00014715|organism=Clytia hemisphaerica|type=transcript|length=3899bp|location=Sequence derived from alignment at sc0000197:65892..69790- (Clytia hemisphaerica)
ATTATTTTAATTTCTCAACAAAATGTCAAAATATGTACAAATAAATCTAA
CCGCAATATCTTTGCTTCAAACTTCAGGTTCTGAGAAAAAATCAAAAGTC
AAAGTAGAAGGGAAAGGCAAGAAACGTTCAAAAGATTCTATTGATGACGA
TCTCAATGACGAGCCCGGAAACGAAGAAACTGGGGGCACAAAAGTCGTCC
GCGAGTCCGAACGACGACACGCGAACAACGCCCGTGAAAGGATACGAGTG
CGAGATATCAACGAAGCTTTCAAAGAACTCGGGCGAATGTGTTCGTTACA
CCTCAAAAACGAAAGTCCACAAACGAAGGTATTTGAAAATTTGTTTTCTG
AATTTTAACTGAATTTTAAAAATTTGCTTATATGTTTGTTCCCGTTAAGT
TCCCAGACTTAATTTATGAATTCTTTTTTTTTTCAGTTGACGATTTTACA
TCAAGCAGTCACAATTATTACTAGTCTCGAATCACAAGTTAGAGGTATTG
CCAAGTTCGATTATTTTTTAATTTTTACCATATGGCATATCTTTGCATTT
GCTAGCTTTGNCAAACATCTGGAAACCCTTCTCCTCCCTTCGACAGCATG
CAGCAACTAGTGAGTATTTTTTTAATACAATAATTTTATTTTGCATTTTT
CATAATTTTGACTTAATATGTATGCTATATTTACCACCTTTGAAATCTAC
TATTCTAGTTTTCAAAACGGATTTTCTAAACAGAGCTGAACTATATTACC
AGGAACACTTAACAAATGACCATCACATTTATTACAATTTGTTTTAAATA
TTTTTTGTTCTTTCGTTTTATAGAATCGAATGCAAGAAAGTTTAGACGAC
GCCATCTGGGTATTGAAAAGTCACGCAGAAAGCACTTCACAACGCAATCA
AAACATGCCACCCAACGCCCAATACCCGTCCACCCCACAATTTCCACCCG
GTTTAACAGATCAGTTACAAAACTTACAAAACTCTGTCCTGGATACACCA
GGAGGTTTGGAAGCTTCCACGGCTGCTCTCTTAAACTCAATGAATACAAT
TCGAGAAGGCGGTATGCTAGGTAGGCTTTCTCACCATACTCTATTCATAT
TAATGGTCACATGACCATCCATTGTGAGCCTTTGTTTGACGAACAGGAAG
TCCAGAATGTTCGAACTACAGAGAGATTCGAATCATAGAGACAAGTAGCT
CGAATTAACGAGAGTCCACCGTAACTGCCTTTTTGAACAATGCCTTTCTA
TAAATTTAATGTTAAATAGTAGTTTTAAGCATGCAAAACGAGGCGTGTTC
TCATCGATCTCAAAAAGAATGCATTATTTTAATTTCTCAACAAAATGTCA
AAATATGTACAAATAAATCTAACCGCAATATCTTTGCTTCAAACTTCAGG
TTCCGAGAAAAAATCAAAAGTCAAAGTAGAAGGGAAAGGCAAGAAACGTT
CAAAAGATTCTATTGATGACGATCTCAATGACGAGCCTGGAAACGAAGAA
ACTGGGGGCACAAAAGTCGTCCGCGAGTCCGAACGACGACACGCGAACAA
CGCTCGTGAAAGGATACGAGTGCGAGATATCAACGAAGCTTTCAAAGAAC
TCGGGCGAATGTGTTCGTTACACCTCAAAAACGAAAGTCCACAAACGAAG
GTATTTGAAAATTTGTTTTCTGAATTTTAACTGAATTTTAAAAATTAGCT
TATATGTTTGTTCCCGTTAAGTTCCCAGACTTAATTTATGAATTCTTTTT
TTTTTTTCAGTTGACGATTTTACATCAAGCAGTCACAATTATCACTAGTC
TCGAATCACAAGTTCGAGGTATGGCCAAGTTCGATTATTTTTTAATTTTT
ACGATATGGCATATCTTTGCATTTGCTAGCTTTAGTTTAGGTGTCATTGT
CATTTGGAAAGTCTTGTTAATCGTGGAAGCTCTTATGAGATTTATGAGAA
TCATTTTATCAATTGAACTTGTTCAATAACAATGTTTGGACATAGTGATT
TAAATTGACAGAACTTTGGAACAATACAAAACATTATGTGCCAACACGTA
TGTATGTGCGCATGAGCTGTTGCACTAGTAATGCGAAAGTCGTGAGTTCG
AATCTCACTTCAGTCCTCAGTTTAGTAGTTCTCTATCAAACTGAGTTCAA
TGTGCACATACATACGTGTTGGCACTTAATGGTAAGTCGTTGATAATGAT
ATCGTTGAATAACAAAATGTTATGATTCATTCTTCATTTCTATATTTTAC
AGAACGAAATTTGAATCCTAAAGCAGCGTGTTTGAAGCGGCGTGGAGATG
AGGAGAAGATGAATGATGACGTGTCAGAAAAAAGGATGAACATGAATGGC
TCTTTTGATGGCTCAAAGAGACCTGGAAACAAGAAACCTCAACAAGTTCG
AAGGACGGGTACGTTTAAGTGTTGTGTTCTTGGCTAGCTACATTTGAGAT
TGGAAGGTTTTCACAGAGTTTTTCTTCTCTCTTTGCTTATATGTTGTTCA
ATGAAGGAGCGAAGCCTCATTTTTTAAGGATTGATCAAGAAGATCATTAT
AAATTTTCTACCACTACTTGATAATCTTAGCCAAATTTTCTACAATAGCG
CTCCAGCCTCGCACCAGTTTTAAACGCTGAATTTTGCTGGTTCTCAAGGA
CTGTTAGTTTAGCGAATAACAATCCAAGACTGATCATATTTTTGCATTTT
TAGGTTTTCCAACCGATCAACTAGACGGCTCAGTTCAACCCATGGTACCG
GATGCCGGCATTTTCTCTCATTAGCTTCTACACTTTCCGAATAGGCTGTG
ACAAATGACTAGAAGATGTAGATCACTAGATCCAGTCTCCTCCCGAGTCT
TATGCAGCTCTTTGAGCCATTGGAGTTGACAGACCTTTTTTTGAAAAAAA
GACATTCATAAAAAACCACCCATTCATTTTTCTATCCGGCTGTGCTTTTG
TATCCGAGCTTCTGTTATTATGGAGAGATTGTTTTTTGTATATATGTCCC
CCTGATCCAGTATATGTGCCGCCGTCAAAAGTTCATTGGTTAGAGATATC
TGGTTGAAACATTCAAATCAATGACAATGAAAAACATTTAAAAGGAACTT
TCTTTTATTCCAAAGCGGCAAAACTGTAATCAAAGATACACCTAATTATT
ATTATTGTACAAAGTAGAATATTTGACCCAAGTTTTTTGAGAGAGATTTT
TTTATTCGTATTGCGGACGATGTATGACGGAAAGTTTATTTTTTTCGGAC
AACATTTGGTTTTGATGTAGATTTTGACGATTTCGCAAAATTTCTTGATT
TCATAATATTGAGGATTTTTGCAGTAAAAACAAAACAACCCTTAGAAATA
TTTATTATTATCTTGATTAGAAGCAAAGTTATTGTTTTATTTTTAGACTG
ATTATTTTGGTTGTATATGTTTTTTAAGGCAAATTTTATTTTGCTTTTTA
TGTTTCCATGAGCGCTCAAGTAACCTTATTTTGGTTTAGCAGATCTTCTG
AAATTTATTTTCAATTTCAAAGTTTCAAACTCATTACAGACCACCATTAG
CCTCTGGTACAGTGTCTCTTGTGTGTATTGTTTAGGCTTTAGTTTTAATT
ATTGTATATTATGACCCTATTATGGTTGTTATTTTAGCGAAGTAGTACAG
TGTTTATTTTTGAACCGTCCATATGTTTTGTAGGAGAGCTGGTTAGGCGC
CTAACCGTACTTTTGGTGTATGTTGATTCGTTGTAGACACAATGACGTCA
CATCAGCTCTCCACGACAATCTATCCCCAAATATCAAGAGAAGCAAATTC
AATTTTAATAAAAAGATACAAAAATGCAAAAATGAAGCTTTTTGTTGTCA
TTATTTGTCGAATATATTCTGACTTTTATCATGGAGGTATAAAGAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008234XLOC_008234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014715-exon-sc0000197-1575043694:69463..69790TCONS_00014715-exon-sc0000197-1575043694:69463..69790Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1575043694:67973..68030TCONS_00014715-exon-sc0000197-1575043694:67973..68030Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1575043694:67383..67538TCONS_00014715-exon-sc0000197-1575043694:67383..67538Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1575043694:65892..67087TCONS_00014715-exon-sc0000197-1575043694:65892..67087Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1510915933:69463..69790TCONS_00014715-exon-sc0000197-1510915933:69463..69790Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1510915933:67973..68030TCONS_00014715-exon-sc0000197-1510915933:67973..68030Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1510915933:67383..67538TCONS_00014715-exon-sc0000197-1510915933:67383..67538Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1510915933:65892..67087TCONS_00014715-exon-sc0000197-1510915933:65892..67087Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1491911889:69463..69790TCONS_00014715-exon-sc0000197-1491911889:69463..69790Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1491911889:67973..68030TCONS_00014715-exon-sc0000197-1491911889:67973..68030Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1491911889:67383..67538TCONS_00014715-exon-sc0000197-1491911889:67383..67538Clytia hemisphaericaexon
TCONS_00014715-exon-sc0000197-1491911889:65892..67087TCONS_00014715-exon-sc0000197-1491911889:65892..67087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:65892..69790 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00014715 vs. Swiss-Prot (Human)
Match: HTF4 (Transcription factor 12 OS=Homo sapiens GN=TCF12 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.169e-37
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 2 
Query:  143 DDDLNDEPGNEETGGTKVVRESERRHANNARERIRVRDINEAFKELGRMCSLHLKNESPQTKLTILHQAVTIITSLESQVRERNLNPKAACLKRRGDEEKMNDDVSEKRMNMNGSFDG 496
            D+DLN E         K+ RE ERR ANNARER+RVRDINEAFKELGRMC LHLK+E PQTKL ILHQAV +I SLE QVRERNLNPKAACLKRR +EEK++   +E    + G+  G
Sbjct:  563 DEDLNPE--------QKIEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRR-EEEKVSAVSAEPPTTLPGTHPG 671
The following BLAST results are available for this feature:
BLAST of TCONS_00014715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HTF41.169e-3765.25Transcription factor 12 OS=Homo sapiens GN=TCF12 P... [more]
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