TCONS_00014758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014758
Unique NameTCONS_00014758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014758 ID=TCONS_00014758|Name=TCONS_00014758|organism=Clytia hemisphaerica|type=transcript|length=392bp
AGCATAACGACGTCACCAGACTTAAAAGTAGATAGAGAGGAAAGGATTAT
TTCCAAGGGGATTGTCACGAGTagcgatgacgtcattattggaTGGGCGG
AAAAGAGGAAAGGAGGCGTTTTTGCGAAATCGCGCTTGAAGAAGTCTCCG
AAAAACAACATTGGCGCCCAGTCTTccttcaaaatttctgaaaatgggaG
ATGGTTTGAGTTGTTTTGGTGAGCAGCTGGCTTGTAATTTTGTGGGATTC
TGTTAGACTTCTTTGCCATATAGATGAATTTCAAACATCGAATCAAGAGT
AAATGACCTTTATCCATGACTctcttttgacaaaattaacTTCCTTTTCC
CCCAAATATCAGAATTTCATAGCATATAAGAAGTATCTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00014758-protein

>TCONS_00014758-protein ID=TCONS_00014758-protein|Name=TCONS_00014758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MDKGHLLLIRCLKFIYMAKKSNRIPQNYKPAAHQNNSNHLPFSEILKEDW
APMLFFGDFFKRDFAKTPPFLFSAHPIMTSSLLVTIPLEIILSSLSTFKS
GDVVM
Run BLAST on NCBI

transcript from alignment at sc0000197:430975..431366

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014758 ID=TCONS_00014758|Name=TCONS_00014758|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at sc0000197:430975..431366 (Clytia hemisphaerica)
AAAAAGATACTTCTTATATGCTATGAAATTCTGATATTTGGGGGAAAAGG
AAgttaattttgtcaaaagagAGTCATGGATAAAGGTCATTTACTCTTGA
TTCGATGTTTGAAATTCATCTATATGGCAAAGAAGTCTAACAGAATCCCA
CAAAATTACAAGCCAGCTGCTCACCAAAACAACTCAAACCATCtcccatt
ttcagaaattttgaaggAAGACTGGGCGCCAATGTTGTTTTTCGGAGACT
TCTTCAAGCGCGATTTCGCAAAAACGCCTCCTTTCCTCTTTTCCGCCCAt
ccaataatgacgtcatcgctACTCGTGACAATCCCCTTGGAAATAATCCT
TTCCTCTCTATCTACTTTTAAGTCTGGTGACGTCGTTATGCT

Coding sequence (CDS) from alignment at sc0000197:430975..431366

>TCONS_00014758 ID=TCONS_00014758|Name=TCONS_00014758|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000197:430975..431366 (Clytia hemisphaerica)
ATGGATAAAGGTCATTTACTCTTGATTCGATGTTTGAAATTCATCTATAT
GGCAAAGAAGTCTAACAGAATCCCACAAAATTACAAGCCAGCTGCTCACC
AAAACAACTCAAACCATCtcccattttcagaaattttgaaggAAGACTGG
GCGCCAATGTTGTTTTTCGGAGACTTCTTCAAGCGCGATTTCGCAAAAAC
GCCTCCTTTCCTCTTTTCCGCCCAtccaataatgacgtcatcgctACTCG
TGACAATCCCCTTGGAAATAATCCTTTCCTCTCTATCTACTTTTAAGTCT
GGTGACGTCGTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008262XLOC_008262Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014758-proteinTCONS_00014758-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014758-exon-sc0000197-1491911889:430975..431366TCONS_00014758-exon-sc0000197-1491911889:430975..431366Clytia hemisphaericaexon
TCONS_00014758-exon-sc0000197-1510915933:430975..431366TCONS_00014758-exon-sc0000197-1510915933:430975..431366Clytia hemisphaericaexon
TCONS_00014758-exon-sc0000197-1575043694:430975..431366TCONS_00014758-exon-sc0000197-1575043694:430975..431366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:430975..431366 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.189051	0	0	0	0	0	0	0	0	0.589241	0	0.128935	0	0	0.118137	0	0	0	0.215654	0.187442	0	0	0	0.208147	1.1146	0.265831	0	0.645533	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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