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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014779 ID=TCONS_00014779|Name=TCONS_00014779|organism=Clytia hemisphaerica|type=transcript|length=1824bp
CGCAAAACAATCTTGAAGGTTTCTTCATCTTTTGGTTTTGCTTTTGTTTG
TCTTTAATGCGAAAGTGTATTGTTTACAACAAGGAAAATGCGAGCATCGC
TACTTCTTATATTCCTGGCTTCGATAGttttggtcAAAGCTTCGAATTTC
CGTTATGCGCATGCACCAAGAGAATACAAAGTTCCCGGTCAACCGGAGTT
CCACAACAAACGAgatgaaattcaatggaaactAAACTACGCTCAAAAGA
CACTTGCTAAAGCcagagaaattgaaaaattagctAAAAAAGCAGCCGTT
CATTTTGGATATTATGATGGGAATAAATCCGGACATAGCACAGTGAAAAG
CATTATCGGACAGGCTCAAGATGTTTTAATGGACGCTTCAGATAAAATAG
GATACTCTtacgaaaaattttaaatcaattcggacattgattattttgaa
actgTGCCATGCTGTTTATTATGTGTTGTAACTTTAAAGCAAATACGAAG
GAAGATGCCGATATTGTCAAAGAATAGCTGACTTGCTGCCAATAAACTGC
AATTCGGTCATTTGAAGTATTTTATACTTTTGGACTCTATTGACATCTTT
ATTATTATAAAGAATACGGTTTCAAGCCCGCGTATATCCTCTCTAAACCA
ATCTAGCAATAGATCTTTTTAATTTcagacgacggtaaaaacaccaaaat
accgccctctgtttaggtgagcaaagacgatatagagccgtacatcaact
attgactttgttttgtatcatttcacttaccgtcgccctcgatatcctcc
gatacgtAAACTCGGTAATCACTGCCCGACGATAGTACTTCATTTCTCAC
ATCGGCTATCTTTCGTAACTCTCTCACTCTATCCCTCTCCATTTTAATCA
AATCATCTGTTATACTGATCATGTCGTATTTCTGATGTTTTTTCAATTCC
GTCAGTCTCGTGAATCTGTATTTCCATCATTGAAAATGTTCCATGCTTCC
TCTGTTCTTCTACTTACTCTTCTACTTTTTCGCTCCGAATCAATActtta
tattttgaatatttatttctCTGTGTGTTCTCGTGACCTCAGCAAAACTT
TTTATTGATTGGCCACTCcttgtttggtcatttttggcATTTACTGCATT
TCAATTTTTGTGGTCAATTTCTTTTCCAAGATTACATTTTTTCCAGTGCC
TAGGGGTTTTTAAGGTTAGTGACAATTGGGTCTTTTCCCGAAGGGATCAC
TCAGGCAAAATAGGATACGGGGACGCACCGCTGGTTAGGTTCCCTTTctc
aagttttgaaaatatcttaCATGATCACTGAATATTGGAAGTTTTATCTG
GCAAGGTTGACTTTTGTTTGGACGTTGCCACCAATTATCAGGGTTGGCTT
TAGAAAGTGTTgcatctgacagggtccataTTTGGTTGAACCTTTTTCGA
TGGGAAAATCACTCGGGTCAGTCACTCTCTCACTTCTAGGTTCTTCCTTT
TCAATTTCTGATTTGACTTTAATTTCTATGATTAgtcattaattttttgg
atTCACCAAAAAACATGATATAaagaaacaatttcaaaattttgatatat
aCTGTAAGCTTAGCTAAGGATTTACGAATTAGTCATATttctatgtaaaa
aaatgacgctcaaaatttaaaaggatTTAACAAAAGACATTCCTCTACGT
AACTTCTATATACTCAAGGCGCAAAGGGGGTccagtttaatttttccatt
tCCCAATAGGAAATTTTTAAATGAACTTTAGTTAAggaactaaaataaaa
actattTCAACAATtatatcacag Run BLAST on NCBI transcript from alignment at sc0000198:336013..338282+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014779 ID=TCONS_00014779|Name=TCONS_00014779|organism=Clytia hemisphaerica|type=transcript|length=2270bp|location=Sequence derived from alignment at sc0000198:336013..338282+ (Clytia hemisphaerica)
CGCAAAACAATCTTGAAGGTTTCTTCATCTTTTGGTTTTGCTTTTGTTTG
TCTTTAATGCGAAAGTGTATTGTTTACAACAAGGAAAATGCGAGCATCGC
TACTTCTTATATTCCTGGCTTCGATAGGTATGTATTATGTCATACTTTAG
CAAACCAAAAACTTCGCGATTTGCGCGTGTTTTGGTCTTTTTCAACCTTT
TGGAGCGATTTTATACTGTCATGAACATTCCTCGGATAGATACAGGCTAC
TTTCAATTAAACTTNTAGGTTTCTTCACCTTTTGGTTTTGCTTTTTATCT
GTCTTTAATGTGAATGTGTATTGTTTAGAACAGGGAAAATGCGAGCATCG
CTGCTTCTTGTCTTCCTGGCTTCGATAGGTATGTATTGTGTCATACTTTT
GCAAAccaaaactttcgcgatttgCGCGTGTTTTGGTCTTTTTCAACCTT
TTGGAGCGATTTTATACTTTAATGAACATTCCTCGGGTAGATACAGGCTA
CTTTCAATTAAACATTTAATGTTTATAACCTACATAAATGGTTTAATCGA
CtttctgtgtttgttttttttagttttggtcAAAGCTTCGAATTTCCGTT
ATGCGCATGCACCAAGAGAATACAAAGTTCCCGGTCAACCGGAGTTCCAC
AACAAACGAgatgaaattcaatggaaactAAACTACGCTCAAAAGACACT
TGCTAAAGCcagagaaattgaaaaattagctAAAAAAGCAGCCGTTCATT
TTGGATATTATGATGGGAATAAATCCGGACATAGCACAGTGAAAAGCATT
ATCGGACAGGCTCAAGATGTTTTAATGGACGCTTCAGATAAAATAGGATA
CTCTtacgaaaaattttaaatcaattcggacattgattattttgaaactg
TGCCATGCTGTTTATTATGTGTTGTAACTTTAAAGCAAATACGAAGGAAG
ATGCCGATATTGTCAAAGAATAGCTGACTTGCTGCCAATAAACTGCAATT
CGGTCATTTGAAGTATTTTATACTTTTGGACTCTATTGACATCTTTATTA
TTATAAAGAATACGGTTTCAAGCCCGCGTATATCCTCTCTAAACCAATCT
AGCAATAGATCTTTTTAATTTcagacgacggtaaaaacaccaaaataccg
ccctctgtttaggtgagcaaagacgatatagagccgtacatcaactattg
actttgttttgtatcatttcacttaccgtcgccctcgatatcctccgata
cgtAAACTCGGTAATCACTGCCCGACGATAGTACTTCATTTCTCACATCG
GCTATCTTTCGTAACTCTCTCACTCTATCCCTCTCCATTTTAATCAAATC
ATCTGTTATACTGATCATGTCGTATTTCTGATGTTTTTTCAATTCCGTCA
GTCTCGTGAATCTGTATTTCCATCATTGAAAATGTTCCATGCTTCCTCTG
TTCTTCTACTTACTCTTCTACTTTTTCGCTCCGAATCAATActttatatt
ttgaatatttatttctCTGTGTGTTCTCGTGACCTCAGCAAAACTTTTTA
TTGATTGGCCACTCcttgtttggtcatttttggcATTTACTGCATTTCAA
TTTTTGTGGTCAATTTCTTTTCCAAGATTACATTTTTTCCAGTGCCTAGG
GGTTTTTAAGGTTAGTGACAATTGGGTCTTTTCCCGAAGGGATCACTCAG
GCAAAATAGGATACGGGGACGCACCGCTGGTTAGGTTCCCTTTctcaagt
tttgaaaatatcttaCATGATCACTGAATATTGGAAGTTTTATCTGGCAA
GGTTGACTTTTGTTTGGACGTTGCCACCAATTATCAGGGTTGGCTTTAGA
AAGTGTTgcatctgacagggtccataTTTGGTTGAACCTTTTTCGATGGG
AAAATCACTCGGGTCAGTCACTCTCTCACTTCTAGGTTCTTCCTTTTCAA
TTTCTGATTTGACTTTAATTTCTATGATTAgtcattaattttttggatTC
ACCAAAAAACATGATATAaagaaacaatttcaaaattttgatatataCTG
TAAGCTTAGCTAAGGATTTACGAATTAGTCATATttctatgtaaaaaaat
gacgctcaaaatttaaaaggatTTAACAAAAGACATTCCTCTACGTAACT
TCTATATACTCAAGGCGCAAAGGGGGTccagtttaatttttccatttCCC
AATAGGAAATTTTTAAATGAACTTTAGTTAAggaactaaaataaaaacta
ttTCAACAATtatatcacag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014779-exon-sc0000198-1491911889:336013..336139 | TCONS_00014779-exon-sc0000198-1491911889:336013..336139 | Clytia hemisphaerica | exon |
| TCONS_00014779-exon-sc0000198-1510915933:336013..336139 | TCONS_00014779-exon-sc0000198-1510915933:336013..336139 | Clytia hemisphaerica | exon |
| TCONS_00014779-exon-sc0000198-1575043694:336013..336139 | TCONS_00014779-exon-sc0000198-1575043694:336013..336139 | Clytia hemisphaerica | exon |
| TCONS_00014779-exon-sc0000198-1491911889:336586..338282 | TCONS_00014779-exon-sc0000198-1491911889:336586..338282 | Clytia hemisphaerica | exon |
| TCONS_00014779-exon-sc0000198-1510915933:336586..338282 | TCONS_00014779-exon-sc0000198-1510915933:336586..338282 | Clytia hemisphaerica | exon |
| TCONS_00014779-exon-sc0000198-1575043694:336586..338282 | TCONS_00014779-exon-sc0000198-1575043694:336586..338282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:336013..338282 + |
Blast
The following BLAST results are available for this feature:
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